Wall clock time and date at job start Mon Mar 30 2020 01:48:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46497 * 109.47163 * 2 1 4 4 C 1.36905 * 119.99856 * 263.86260 * 3 2 1 5 5 H 1.08000 * 119.99607 * 193.66048 * 4 3 2 6 6 C 1.39022 * 120.00196 * 13.65254 * 4 3 2 7 7 N 1.31378 * 120.00003 * 13.47983 * 6 4 3 8 8 Si 1.86800 * 120.00008 * 193.47498 * 6 4 3 9 9 H 1.48501 * 109.47184 * 0.02562 * 8 6 4 10 10 H 1.48494 * 109.47116 * 120.00259 * 8 6 4 11 11 H 1.48501 * 109.47073 * 240.00379 * 8 6 4 12 12 C 1.34770 * 120.00171 * 83.86022 * 3 2 1 13 13 O 1.21634 * 119.99859 * 4.87176 * 12 3 2 14 14 C 1.47430 * 120.00454 * 184.86814 * 12 3 2 15 15 C 1.39706 * 120.11128 * 43.48494 * 14 12 3 16 16 C 1.38115 * 120.29713 * 179.97438 * 15 14 12 17 17 C 1.50698 * 119.73303 * 179.97438 * 16 15 14 18 18 C 1.37986 * 120.53541 * 0.02562 * 16 15 14 19 19 C 1.39946 * 120.22325 * 0.02562 * 18 16 15 20 20 C 1.46782 * 120.15587 * 180.02562 * 19 18 16 21 21 O 1.21293 * 120.00560 * 179.97438 * 20 19 18 22 22 C 1.40142 * 120.11776 * 223.46392 * 14 12 3 23 23 O 1.35343 * 120.26374 * 359.97438 * 22 14 12 24 24 H 1.09006 * 109.46962 * 60.00073 * 1 2 3 25 25 H 1.08996 * 109.47117 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46908 * 300.00355 * 1 2 3 27 27 H 1.09007 * 109.47003 * 240.00071 * 2 1 3 28 28 H 1.08993 * 109.46955 * 119.99757 * 2 1 3 29 29 H 0.96996 * 120.00257 * 179.97438 * 7 6 4 30 30 H 1.07995 * 119.85341 * 359.69899 * 15 14 12 31 31 H 1.08998 * 109.46968 * 89.99598 * 17 16 15 32 32 H 1.08994 * 109.47193 * 209.99843 * 17 16 15 33 33 H 1.08998 * 109.46981 * 329.99823 * 17 16 15 34 34 H 1.07996 * 119.89074 * 179.97438 * 18 16 15 35 35 H 1.08008 * 119.99836 * 359.97235 * 20 19 18 36 36 H 0.96704 * 113.99377 * 90.00116 * 23 22 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3660 1.9843 -1.1789 5 1 2.9268 2.9072 -1.1683 6 6 1.9974 1.4086 -2.3894 7 7 1.1027 0.4469 -2.4140 8 14 2.7741 2.0026 -3.9810 9 1 3.7452 3.0861 -3.6838 10 1 3.4791 0.8735 -4.6393 11 1 1.7159 2.5200 -4.8853 12 6 2.1253 2.0581 1.1604 13 8 1.9015 1.4957 2.2154 14 6 2.5136 3.4804 1.1512 15 6 1.9505 4.3546 0.2183 16 6 2.3111 5.6878 0.2065 17 6 1.6962 6.6195 -0.8058 18 6 3.2307 6.1733 1.1135 19 6 3.8093 5.3169 2.0570 20 6 4.7869 5.8351 3.0215 21 8 5.2864 5.0905 3.8384 22 6 3.4485 3.9601 2.0785 23 8 3.9995 3.1221 2.9873 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8934 -0.5139 -0.8901 28 1 1.8933 -0.5138 0.8900 29 1 0.8452 0.0454 -3.2586 30 1 1.2333 3.9854 -0.4998 31 1 0.7867 7.0557 -0.3927 32 1 2.4035 7.4133 -1.0457 33 1 1.4535 6.0632 -1.7112 34 1 3.5054 7.2176 1.0947 35 1 5.0616 6.8795 3.0038 36 1 4.8138 2.6960 2.6863 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001442122844.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:23 Heat of formation + Delta-G solvation = -70.915581 kcal Electronic energy + Delta-G solvation = -21989.834893 eV Core-core repulsion = 18633.308326 eV Total energy + Delta-G solvation = -3356.526567 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.12393 -38.61934 -37.51368 -36.56222 -34.99526 -31.74612 -31.64383 -31.43490 -29.34536 -26.13385 -25.07159 -24.45941 -23.55257 -21.42259 -20.16871 -19.22308 -17.99664 -17.28235 -16.27065 -16.25015 -15.37980 -14.95318 -14.59250 -14.35133 -14.26682 -13.97991 -13.47793 -13.35693 -13.31539 -12.87570 -12.47735 -12.39911 -11.91124 -11.67720 -11.60310 -11.34464 -11.24511 -10.99142 -10.77857 -10.54150 -10.48229 -10.29998 -9.84233 -9.43431 -9.01302 -8.63014 -8.36930 -8.12948 -7.82896 -6.44543 -4.01402 0.89695 1.42505 2.64526 3.00091 3.11643 3.14126 3.66152 3.94253 4.13632 4.34542 4.60099 4.70122 4.95143 4.99280 5.27701 5.33657 5.49186 5.75248 5.79097 5.82525 6.01494 6.17638 6.24350 6.36128 6.54343 6.69679 6.76028 6.79888 6.84136 7.01150 7.07723 7.20847 7.39395 7.62393 7.66298 7.73793 8.13545 8.35304 8.94510 9.42129 9.83874 10.49416 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.016904 B = 0.007225 C = 0.005849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1656.009773 B = 3874.713448 C = 4785.890831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.133 3.867 3 N -0.430 5.430 4 C -0.332 4.332 5 H 0.101 0.899 6 C 0.034 3.966 7 N -0.858 5.858 8 Si 0.919 3.081 9 H -0.268 1.268 10 H -0.279 1.279 11 H -0.280 1.280 12 C 0.486 3.514 13 O -0.588 6.588 14 C -0.124 4.124 15 C -0.023 4.023 16 C -0.129 4.129 17 C -0.108 4.108 18 C -0.054 4.054 19 C -0.238 4.238 20 C 0.382 3.618 21 O -0.453 6.453 22 C 0.197 3.803 23 O -0.464 6.464 24 H 0.086 0.914 25 H 0.034 0.966 26 H 0.024 0.976 27 H 0.103 0.897 28 H 0.035 0.965 29 H 0.269 0.731 30 H 0.148 0.852 31 H 0.067 0.933 32 H 0.063 0.937 33 H 0.070 0.930 34 H 0.129 0.871 35 H 0.098 0.902 36 H 0.389 0.611 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.105 10.559 -1.214 11.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.011 3.989 3 N -0.147 5.147 4 C -0.459 4.459 5 H 0.119 0.881 6 C -0.171 4.171 7 N -0.497 5.497 8 Si 0.745 3.255 9 H -0.192 1.192 10 H -0.205 1.205 11 H -0.205 1.205 12 C 0.275 3.725 13 O -0.474 6.474 14 C -0.128 4.128 15 C -0.042 4.042 16 C -0.129 4.129 17 C -0.165 4.165 18 C -0.073 4.073 19 C -0.240 4.240 20 C 0.240 3.760 21 O -0.325 6.325 22 C 0.149 3.851 23 O -0.274 6.274 24 H 0.104 0.896 25 H 0.053 0.947 26 H 0.043 0.957 27 H 0.121 0.879 28 H 0.054 0.946 29 H 0.080 0.920 30 H 0.166 0.834 31 H 0.086 0.914 32 H 0.082 0.918 33 H 0.089 0.911 34 H 0.147 0.853 35 H 0.114 0.886 36 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges 2.698 9.845 -0.086 10.209 hybrid contribution 0.589 0.141 -1.383 1.510 sum 3.288 9.986 -1.469 10.616 Atomic orbital electron populations 1.21995 0.96746 0.99597 1.01413 1.21295 0.94431 0.82656 1.00552 1.43757 1.54259 1.11557 1.05109 1.19879 1.33683 1.09531 0.82847 0.88093 1.25272 0.95607 0.96752 0.99444 1.70097 1.27618 1.25162 1.26791 0.85976 0.79163 0.78917 0.81402 1.19202 1.20451 1.20541 1.17708 0.84861 0.85463 0.84493 1.90686 1.56683 1.69165 1.30859 1.20583 0.99834 0.96405 0.95961 1.21683 0.96262 0.91318 0.94914 1.19771 0.99567 0.94679 0.98868 1.20731 1.00298 0.98012 0.97465 1.21093 0.94804 0.98662 0.92750 1.21146 1.05279 0.94773 1.02789 1.23740 0.78383 0.93521 0.80341 1.90547 1.46808 1.61840 1.33352 1.18746 0.91784 0.88109 0.86449 1.84690 1.43636 1.60389 1.38710 0.89557 0.94665 0.95708 0.87946 0.94617 0.92028 0.83450 0.91439 0.91793 0.91131 0.85280 0.88623 0.75360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.22 9.64 37.16 0.36 -2.86 16 2 C 0.13 3.25 5.28 -4.04 -0.02 3.23 16 3 N -0.43 -10.66 2.63 -116.03 -0.31 -10.96 16 4 C -0.33 -7.88 7.72 -15.00 -0.12 -7.99 16 5 H 0.10 2.30 5.59 -52.49 -0.29 2.01 16 6 C 0.03 0.78 5.13 -17.45 -0.09 0.69 16 7 N -0.86 -20.50 8.08 55.50 0.45 -20.05 16 8 Si 0.92 18.15 29.57 -169.99 -5.03 13.13 16 9 H -0.27 -5.20 7.11 56.52 0.40 -4.79 16 10 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 11 H -0.28 -5.51 7.11 56.52 0.40 -5.11 16 12 C 0.49 12.17 6.97 -12.52 -0.09 12.08 16 13 O -0.59 -16.49 15.94 -8.68 -0.14 -16.63 16 14 C -0.12 -2.65 5.07 -104.89 -0.53 -3.18 16 15 C -0.02 -0.42 7.21 -39.08 -0.28 -0.70 16 16 C -0.13 -1.88 5.87 -104.76 -0.61 -2.50 16 17 C -0.11 -1.21 10.00 36.00 0.36 -0.85 16 18 C -0.05 -0.71 9.42 -39.03 -0.37 -1.08 16 19 C -0.24 -3.73 5.88 -104.98 -0.62 -4.35 16 20 C 0.38 5.23 11.44 34.18 0.39 5.62 16 21 O -0.45 -7.94 15.98 -16.37 -0.26 -8.20 16 22 C 0.20 3.87 6.71 -38.05 -0.26 3.62 16 23 O -0.46 -9.56 10.45 -46.15 -0.48 -10.04 16 24 H 0.09 2.09 6.26 -51.93 -0.32 1.77 16 25 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 27 H 0.10 2.55 5.83 -51.92 -0.30 2.25 16 28 H 0.04 0.88 7.55 -51.93 -0.39 0.49 16 29 H 0.27 6.10 8.31 -40.82 -0.34 5.76 16 30 H 0.15 2.85 6.83 -52.49 -0.36 2.49 16 31 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.06 0.58 8.08 -51.93 -0.42 0.16 16 33 H 0.07 0.82 8.08 -51.93 -0.42 0.40 16 34 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 35 H 0.10 0.84 8.06 -52.48 -0.42 0.42 16 36 H 0.39 6.58 9.06 45.56 0.41 6.99 16 LS Contribution 306.41 15.07 4.62 4.62 Total: -1.00 -31.00 306.41 -6.37 -37.37 By element: Atomic # 1 Polarization: 12.41 SS G_CDS: -3.35 Total: 9.06 kcal Atomic # 6 Polarization: 3.59 SS G_CDS: -1.87 Total: 1.72 kcal Atomic # 7 Polarization: -31.16 SS G_CDS: 0.14 Total: -31.02 kcal Atomic # 8 Polarization: -33.99 SS G_CDS: -0.88 Total: -34.88 kcal Atomic # 14 Polarization: 18.15 SS G_CDS: -5.03 Total: 13.13 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -31.00 -6.37 -37.37 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001442122844.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.548 kcal (2) G-P(sol) polarization free energy of solvation -30.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds