Wall clock time and date at job start Mon Mar 30 2020 01:48:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46497 * 109.47163 * 2 1 4 4 C 1.36905 * 119.99856 * 263.86260 * 3 2 1 5 5 H 1.08000 * 119.99607 * 193.66048 * 4 3 2 6 6 C 1.39022 * 120.00196 * 13.65254 * 4 3 2 7 7 N 1.31378 * 120.00003 * 13.47983 * 6 4 3 8 8 Si 1.86800 * 120.00008 * 193.47498 * 6 4 3 9 9 H 1.48501 * 109.47184 * 0.02562 * 8 6 4 10 10 H 1.48494 * 109.47116 * 120.00259 * 8 6 4 11 11 H 1.48501 * 109.47073 * 240.00379 * 8 6 4 12 12 C 1.34770 * 120.00171 * 83.86022 * 3 2 1 13 13 O 1.21634 * 119.99859 * 4.87176 * 12 3 2 14 14 C 1.47430 * 120.00454 * 184.86814 * 12 3 2 15 15 C 1.39706 * 120.11128 * 43.48494 * 14 12 3 16 16 C 1.38115 * 120.29713 * 179.97438 * 15 14 12 17 17 C 1.50698 * 119.73303 * 179.97438 * 16 15 14 18 18 C 1.37986 * 120.53541 * 0.02562 * 16 15 14 19 19 C 1.39946 * 120.22325 * 0.02562 * 18 16 15 20 20 C 1.46782 * 120.15587 * 180.02562 * 19 18 16 21 21 O 1.21293 * 120.00560 * 179.97438 * 20 19 18 22 22 C 1.40142 * 120.11776 * 223.46392 * 14 12 3 23 23 O 1.35343 * 120.26374 * 359.97438 * 22 14 12 24 24 H 1.09006 * 109.46962 * 60.00073 * 1 2 3 25 25 H 1.08996 * 109.47117 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46908 * 300.00355 * 1 2 3 27 27 H 1.09007 * 109.47003 * 240.00071 * 2 1 3 28 28 H 1.08993 * 109.46955 * 119.99757 * 2 1 3 29 29 H 0.96996 * 120.00257 * 179.97438 * 7 6 4 30 30 H 1.07995 * 119.85341 * 359.69899 * 15 14 12 31 31 H 1.08998 * 109.46968 * 89.99598 * 17 16 15 32 32 H 1.08994 * 109.47193 * 209.99843 * 17 16 15 33 33 H 1.08998 * 109.46981 * 329.99823 * 17 16 15 34 34 H 1.07996 * 119.89074 * 179.97438 * 18 16 15 35 35 H 1.08008 * 119.99836 * 359.97235 * 20 19 18 36 36 H 0.96704 * 113.99377 * 90.00116 * 23 22 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3660 1.9843 -1.1789 5 1 2.9268 2.9072 -1.1683 6 6 1.9974 1.4086 -2.3894 7 7 1.1027 0.4469 -2.4140 8 14 2.7741 2.0026 -3.9810 9 1 3.7452 3.0861 -3.6838 10 1 3.4791 0.8735 -4.6393 11 1 1.7159 2.5200 -4.8853 12 6 2.1253 2.0581 1.1604 13 8 1.9015 1.4957 2.2154 14 6 2.5136 3.4804 1.1512 15 6 1.9505 4.3546 0.2183 16 6 2.3111 5.6878 0.2065 17 6 1.6962 6.6195 -0.8058 18 6 3.2307 6.1733 1.1135 19 6 3.8093 5.3169 2.0570 20 6 4.7869 5.8351 3.0215 21 8 5.2864 5.0905 3.8384 22 6 3.4485 3.9601 2.0785 23 8 3.9995 3.1221 2.9873 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8934 -0.5139 -0.8901 28 1 1.8933 -0.5138 0.8900 29 1 0.8452 0.0454 -3.2586 30 1 1.2333 3.9854 -0.4998 31 1 0.7867 7.0557 -0.3927 32 1 2.4035 7.4133 -1.0457 33 1 1.4535 6.0632 -1.7112 34 1 3.5054 7.2176 1.0947 35 1 5.0616 6.8795 3.0038 36 1 4.8138 2.6960 2.6863 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001442122844.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:23 Heat of formation + Delta-G solvation = -90.575455 kcal Electronic energy + Delta-G solvation = -21990.687409 eV Core-core repulsion = 18633.308326 eV Total energy + Delta-G solvation = -3357.379083 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.54861 -40.18867 -38.91340 -37.97127 -36.91774 -33.52973 -33.05793 -32.80418 -31.11375 -27.26109 -26.85307 -25.69942 -25.21037 -23.10354 -21.38489 -21.03006 -19.53380 -18.79195 -18.02680 -17.55369 -16.76241 -16.41994 -16.30177 -15.91370 -15.70109 -15.22283 -15.12275 -14.71834 -14.62310 -14.44115 -14.26529 -13.75256 -13.43766 -13.24628 -12.90902 -12.79256 -12.71552 -12.58243 -12.40880 -12.17830 -12.05583 -11.82242 -11.73387 -10.91012 -10.70149 -10.33560 -9.84877 -9.78227 -9.38560 -8.25439 -5.89637 -0.32335 0.07639 1.39161 1.48900 1.51469 1.60618 2.07605 2.26791 2.69950 2.88025 3.13786 3.26430 3.42925 3.90053 4.00197 4.24451 4.33127 4.42858 4.59043 4.73187 4.74624 4.79600 4.88270 4.97156 5.00347 5.05684 5.14343 5.29588 5.34908 5.38756 5.43941 5.58291 5.75571 5.79082 5.86651 6.47596 6.60309 6.74521 7.08921 7.53129 7.95575 8.70031 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.016904 B = 0.007225 C = 0.005849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1656.009773 B = 3874.713448 C = 4785.890831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.133 3.867 3 N -0.437 5.437 4 C -0.347 4.347 5 H 0.108 0.892 6 C -0.003 4.003 7 N -0.880 5.880 8 Si 0.988 3.012 9 H -0.258 1.258 10 H -0.282 1.282 11 H -0.274 1.274 12 C 0.472 3.528 13 O -0.636 6.636 14 C -0.162 4.162 15 C -0.036 4.036 16 C -0.122 4.122 17 C -0.107 4.107 18 C -0.024 4.024 19 C -0.239 4.239 20 C 0.391 3.609 21 O -0.497 6.497 22 C 0.165 3.835 23 O -0.488 6.488 24 H 0.076 0.924 25 H 0.056 0.944 26 H 0.007 0.993 27 H 0.098 0.902 28 H 0.021 0.979 29 H 0.273 0.727 30 H 0.127 0.873 31 H 0.082 0.918 32 H 0.099 0.901 33 H 0.061 0.939 34 H 0.193 0.807 35 H 0.171 0.829 36 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.146 14.669 -2.792 15.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.010 3.990 3 N -0.153 5.153 4 C -0.475 4.475 5 H 0.126 0.874 6 C -0.205 4.205 7 N -0.519 5.519 8 Si 0.811 3.189 9 H -0.182 1.182 10 H -0.208 1.208 11 H -0.199 1.199 12 C 0.263 3.737 13 O -0.526 6.526 14 C -0.165 4.165 15 C -0.055 4.055 16 C -0.122 4.122 17 C -0.163 4.163 18 C -0.042 4.042 19 C -0.241 4.241 20 C 0.252 3.748 21 O -0.372 6.372 22 C 0.118 3.882 23 O -0.299 6.299 24 H 0.094 0.906 25 H 0.075 0.925 26 H 0.027 0.973 27 H 0.116 0.884 28 H 0.039 0.961 29 H 0.083 0.917 30 H 0.145 0.855 31 H 0.101 0.899 32 H 0.118 0.882 33 H 0.080 0.920 34 H 0.210 0.790 35 H 0.186 0.814 36 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges 3.732 13.973 -1.688 14.561 hybrid contribution 0.241 -1.087 -0.910 1.438 sum 3.973 12.885 -2.598 13.732 Atomic orbital electron populations 1.21824 0.95778 1.00585 0.99901 1.21256 0.95216 0.83095 0.99408 1.43966 1.54005 1.11510 1.05809 1.20135 1.34405 1.10197 0.82714 0.87430 1.26098 0.95607 0.96735 1.02099 1.70172 1.28131 1.25813 1.27749 0.84934 0.78353 0.78412 0.77161 1.18193 1.20809 1.19917 1.18397 0.84382 0.87221 0.83739 1.90614 1.58875 1.70783 1.32310 1.20420 1.02695 0.94507 0.98922 1.21591 0.96538 0.93153 0.94248 1.20207 0.99097 0.93268 0.99601 1.20830 1.01641 0.97898 0.95949 1.21734 0.91801 1.00901 0.89718 1.21638 1.05656 0.93010 1.03808 1.24639 0.76333 0.95674 0.78161 1.90558 1.48135 1.63566 1.34973 1.19145 0.92479 0.89961 0.86631 1.84655 1.44279 1.61286 1.39684 0.90557 0.92464 0.97350 0.88425 0.96081 0.91701 0.85467 0.89907 0.88245 0.91993 0.78981 0.81357 0.74747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.93 9.64 71.98 0.69 -5.24 16 2 C 0.13 6.86 5.28 86.38 0.46 7.32 16 3 N -0.44 -22.90 2.63 -639.25 -1.68 -24.58 16 4 C -0.35 -16.98 7.72 84.09 0.65 -16.33 16 5 H 0.11 5.01 5.59 -2.91 -0.02 4.99 16 6 C 0.00 -0.14 5.13 84.95 0.44 0.29 16 7 N -0.88 -42.71 8.08 21.68 0.18 -42.54 16 8 Si 0.99 36.73 29.57 68.60 2.03 38.75 16 9 H -0.26 -9.13 7.11 99.48 0.71 -8.42 16 10 H -0.28 -10.62 7.11 99.48 0.71 -9.92 16 11 H -0.27 -9.89 7.11 99.48 0.71 -9.19 16 12 C 0.47 25.23 6.97 86.67 0.60 25.84 16 13 O -0.64 -38.43 15.94 9.18 0.15 -38.29 16 14 C -0.16 -7.19 5.07 -20.04 -0.10 -7.29 16 15 C -0.04 -1.34 7.21 22.60 0.16 -1.17 16 16 C -0.12 -3.14 5.87 -19.95 -0.12 -3.26 16 17 C -0.11 -1.88 10.00 71.24 0.71 -1.17 16 18 C -0.02 -0.49 9.42 22.62 0.21 -0.28 16 19 C -0.24 -6.82 5.88 -20.10 -0.12 -6.94 16 20 C 0.39 9.14 11.44 70.06 0.80 9.94 16 21 O -0.50 -16.71 15.98 17.89 0.29 -16.42 16 22 C 0.16 6.61 6.71 23.26 0.16 6.76 16 23 O -0.49 -21.25 10.45 -59.14 -0.62 -21.87 16 24 H 0.08 3.84 6.26 -2.38 -0.01 3.82 16 25 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 26 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 27 H 0.10 5.09 5.83 -2.38 -0.01 5.08 16 28 H 0.02 1.11 7.55 -2.39 -0.02 1.09 16 29 H 0.27 12.42 8.31 -92.71 -0.77 11.65 16 30 H 0.13 5.10 6.83 -2.91 -0.02 5.08 16 31 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.10 1.10 8.08 -2.39 -0.02 1.09 16 33 H 0.06 1.23 8.08 -2.39 -0.02 1.21 16 34 H 0.19 1.69 8.06 -2.91 -0.02 1.66 16 35 H 0.17 1.66 8.06 -2.91 -0.02 1.63 16 36 H 0.39 14.57 9.06 -74.05 -0.67 13.90 16 Total: -1.00 -74.11 306.41 5.33 -68.77 By element: Atomic # 1 Polarization: 27.26 SS G_CDS: 0.45 Total: 27.71 kcal Atomic # 6 Polarization: 3.92 SS G_CDS: 4.55 Total: 8.47 kcal Atomic # 7 Polarization: -65.61 SS G_CDS: -1.51 Total: -67.12 kcal Atomic # 8 Polarization: -76.40 SS G_CDS: -0.19 Total: -76.58 kcal Atomic # 14 Polarization: 36.73 SS G_CDS: 2.03 Total: 38.75 kcal Total: -74.11 5.33 -68.77 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001442122844.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.802 kcal (2) G-P(sol) polarization free energy of solvation -74.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds