Wall clock time and date at job start Mon Mar 30 2020 01:41:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42901 * 114.00076 * 2 1 4 4 C 1.53005 * 109.47122 * 179.97438 * 3 2 1 5 5 H 1.09000 * 109.46949 * 184.99600 * 4 3 2 6 6 C 1.52999 * 109.47123 * 305.00310 * 4 3 2 7 7 N 1.46500 * 109.46808 * 64.99863 * 4 3 2 8 8 S 1.65605 * 119.99796 * 144.99675 * 7 4 3 9 9 O 1.42097 * 104.27510 * 181.07494 * 8 7 4 10 10 O 1.42098 * 104.27706 * 308.92936 * 8 7 4 11 11 C 1.81398 * 104.44659 * 65.00390 * 8 7 4 12 12 C 1.52996 * 109.47013 * 172.68922 * 11 8 7 13 13 C 1.50703 * 115.55141 * 65.16016 * 12 11 8 14 14 H 1.07995 * 119.99822 * 264.90566 * 13 12 11 15 15 C 1.37875 * 120.00272 * 84.89917 * 13 12 11 16 16 N 1.31517 * 119.99651 * 352.83962 * 15 13 12 17 17 Si 1.86800 * 120.00201 * 172.83352 * 15 13 12 18 18 H 1.48495 * 109.47210 * 0.02562 * 17 15 13 19 19 H 1.48504 * 109.46682 * 120.00441 * 17 15 13 20 20 H 1.48500 * 109.47082 * 240.00367 * 17 15 13 21 21 C 1.53002 * 117.50126 * 279.48643 * 12 11 8 22 22 C 1.53003 * 117.50188 * 210.82782 * 12 11 8 23 23 H 1.09005 * 109.47148 * 300.00263 * 1 2 3 24 24 H 1.09000 * 109.47021 * 59.99846 * 1 2 3 25 25 H 1.08998 * 109.47761 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.46825 * 60.00022 * 3 2 1 27 27 H 1.08998 * 109.47354 * 299.99994 * 3 2 1 28 28 H 1.08997 * 109.46970 * 299.99344 * 6 4 3 29 29 H 1.09007 * 109.46647 * 179.97438 * 6 4 3 30 30 H 1.08994 * 109.46950 * 59.99916 * 6 4 3 31 31 H 0.97001 * 120.00701 * 325.00452 * 7 4 3 32 32 H 1.08994 * 109.47004 * 292.68802 * 11 8 7 33 33 H 1.09000 * 109.46982 * 52.69190 * 11 8 7 34 34 H 0.97010 * 119.99778 * 185.02704 * 16 15 13 35 35 H 1.08995 * 117.49893 * 0.02562 * 21 12 11 36 36 H 1.09001 * 117.49893 * 145.02000 * 21 12 11 37 37 H 1.09000 * 117.50132 * 214.98064 * 22 12 11 38 38 H 1.09000 * 117.49452 * 359.97438 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 1 3.9784 2.1765 0.0901 6 6 3.9780 0.3197 1.1826 7 7 3.9766 0.5639 -1.2509 8 16 5.4020 1.0338 -1.9507 9 8 5.4856 0.2522 -3.1345 10 8 5.3114 2.4506 -2.0132 11 6 6.6772 0.5292 -0.7633 12 6 8.0612 0.7460 -1.3784 13 6 8.4309 2.1800 -1.6577 14 1 8.2691 2.5978 -2.6403 15 6 8.9757 2.9587 -0.6587 16 7 9.0430 2.4979 0.5712 17 14 9.6184 4.6679 -1.0523 18 1 9.4275 4.9478 -2.4981 19 1 8.8743 5.6730 -0.2514 20 1 11.0639 4.7419 -0.7200 21 6 8.5780 -0.3185 -2.3482 22 6 9.1824 -0.2013 -0.9468 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 1.6885 1.8463 0.8900 27 1 1.6886 1.8464 -0.8900 28 1 3.6498 0.7815 2.1137 29 1 5.0647 0.2333 1.1827 30 1 3.5350 -0.6721 1.0929 31 1 3.4338 -0.1223 -1.6697 32 1 6.5852 1.1260 0.1440 33 1 6.5493 -0.5254 -0.5192 34 1 9.3584 3.0712 1.2874 35 1 7.9318 -1.1731 -2.5484 36 1 9.1857 0.0183 -3.1881 37 1 10.1875 0.2125 -0.8653 38 1 8.9341 -0.9788 -0.2243 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001475114140.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:18 Heat of formation + Delta-G solvation = -101.156394 kcal Electronic energy + Delta-G solvation = -20809.594065 eV Core-core repulsion = 17587.200110 eV Total energy + Delta-G solvation = -3222.393955 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.43247 -36.72916 -36.24147 -35.48698 -35.00683 -32.02704 -29.98291 -28.28533 -27.29310 -25.72483 -25.39034 -21.24257 -21.15839 -19.71009 -18.69871 -17.13869 -16.71922 -16.27736 -16.10932 -15.51830 -15.07247 -14.79509 -14.60159 -14.19316 -13.81846 -13.30375 -13.09236 -12.89317 -12.48682 -11.92550 -11.89528 -11.77638 -11.43946 -11.26145 -11.22800 -11.02544 -11.00830 -10.94211 -10.71911 -10.54230 -10.42390 -10.07641 -9.80217 -9.70064 -9.17911 -8.93400 -8.55369 -8.06395 -6.12888 -4.23223 1.13837 3.29111 3.36927 3.44563 3.45812 3.70394 4.38347 4.59163 4.79193 4.94197 5.10294 5.13499 5.16912 5.20877 5.23336 5.31312 5.42986 5.49684 5.52266 5.66884 5.83967 5.95717 6.03763 6.27983 6.31763 6.39314 6.46464 6.65028 6.75521 7.00979 7.01658 7.26781 7.40913 7.42224 7.81715 8.22536 8.82666 9.47883 10.94814 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.022796 B = 0.005842 C = 0.005455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.975662 B = 4791.593527 C = 5131.682825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.386 6.386 3 C 0.057 3.943 4 C 0.149 3.851 5 H 0.106 0.894 6 C -0.175 4.175 7 N -1.125 6.125 8 S 2.606 3.394 9 O -0.975 6.975 10 O -0.954 6.954 11 C -0.554 4.554 12 C 0.042 3.958 13 C -0.514 4.514 14 H 0.068 0.932 15 C 0.082 3.918 16 N -0.875 5.875 17 Si 0.892 3.108 18 H -0.268 1.268 19 H -0.281 1.281 20 H -0.283 1.283 21 C -0.208 4.208 22 C -0.141 4.141 23 H 0.039 0.961 24 H 0.040 0.960 25 H 0.084 0.916 26 H 0.060 0.940 27 H 0.058 0.942 28 H 0.064 0.936 29 H 0.067 0.933 30 H 0.069 0.931 31 H 0.413 0.587 32 H 0.134 0.866 33 H 0.100 0.900 34 H 0.262 0.738 35 H 0.075 0.925 36 H 0.086 0.914 37 H 0.085 0.915 38 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.312 -4.625 2.808 14.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.304 6.304 3 C -0.021 4.021 4 C 0.042 3.958 5 H 0.123 0.877 6 C -0.234 4.234 7 N -0.881 5.881 8 S 2.703 3.297 9 O -0.965 6.965 10 O -0.944 6.944 11 C -0.687 4.687 12 C 0.040 3.960 13 C -0.552 4.552 14 H 0.087 0.913 15 C -0.123 4.123 16 N -0.510 5.510 17 Si 0.719 3.281 18 H -0.192 1.192 19 H -0.207 1.207 20 H -0.209 1.209 21 C -0.245 4.245 22 C -0.180 4.180 23 H 0.058 0.942 24 H 0.059 0.941 25 H 0.102 0.898 26 H 0.079 0.921 27 H 0.076 0.924 28 H 0.083 0.917 29 H 0.086 0.914 30 H 0.088 0.912 31 H 0.246 0.754 32 H 0.152 0.848 33 H 0.119 0.881 34 H 0.072 0.928 35 H 0.093 0.907 36 H 0.104 0.896 37 H 0.104 0.896 38 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -12.938 -4.157 2.225 13.770 hybrid contribution 0.022 0.520 0.546 0.754 sum -12.916 -3.638 2.770 13.701 Atomic orbital electron populations 1.22725 0.81330 1.02596 0.99881 1.87874 1.19337 1.27834 1.95394 1.22834 0.93381 0.84881 1.00970 1.20840 0.92931 0.97716 0.84348 0.87659 1.22353 1.02541 1.01282 0.97204 1.55975 1.41035 1.55045 1.36057 1.05136 0.74140 0.74733 0.75663 1.93500 1.86183 1.72160 1.44674 1.93526 1.85063 1.29598 1.86191 1.30060 1.13747 1.08650 1.16231 1.18299 0.87834 0.92217 0.97692 1.20573 1.42849 0.93578 0.98154 0.91343 1.24952 0.94261 0.98228 0.94887 1.69994 1.45459 1.35985 0.99589 0.86520 0.78415 0.83929 0.79241 1.19236 1.20652 1.20867 1.23189 1.05488 1.01691 0.94141 1.22542 0.99324 1.01357 0.94766 0.94210 0.94146 0.89760 0.92139 0.92361 0.91725 0.91394 0.91177 0.75393 0.84782 0.88142 0.92814 0.90681 0.89577 0.89624 0.91548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 11.01 101.05 1.11 1.37 16 2 O -0.39 -4.43 9.53 -35.23 -0.34 -4.77 16 3 C 0.06 0.65 5.73 37.16 0.21 0.87 16 4 C 0.15 2.05 3.21 -67.93 -0.22 1.83 16 5 H 0.11 1.52 7.48 -51.93 -0.39 1.13 16 6 C -0.17 -2.21 9.28 37.16 0.34 -1.87 16 7 N -1.12 -17.47 5.35 -4.89 -0.03 -17.50 16 8 S 2.61 53.19 5.16 -107.50 -0.55 52.64 16 9 O -0.97 -21.86 18.08 -57.54 -1.04 -22.90 16 10 O -0.95 -22.65 17.12 -57.54 -0.98 -23.64 16 11 C -0.55 -11.59 4.82 37.16 0.18 -11.41 16 12 C 0.04 1.02 1.33 -155.66 -0.21 0.82 16 13 C -0.51 -14.07 8.23 -34.44 -0.28 -14.35 16 14 H 0.07 1.92 7.82 -52.49 -0.41 1.51 16 15 C 0.08 2.22 5.38 -17.82 -0.10 2.12 16 16 N -0.87 -23.88 12.96 55.43 0.72 -23.16 16 17 Si 0.89 21.36 29.55 -169.99 -5.02 16.33 16 18 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 19 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 20 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 21 C -0.21 -4.61 9.96 -26.69 -0.27 -4.88 16 22 C -0.14 -3.22 9.47 -26.69 -0.25 -3.47 16 23 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 24 H 0.04 0.31 8.14 -51.93 -0.42 -0.12 16 25 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 26 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 27 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.07 0.93 6.02 -51.92 -0.31 0.62 16 30 H 0.07 0.86 7.56 -51.93 -0.39 0.47 16 31 H 0.41 5.79 8.54 -34.47 -0.29 5.49 16 32 H 0.13 2.87 7.26 -51.93 -0.38 2.49 16 33 H 0.10 1.79 8.09 -51.92 -0.42 1.37 16 34 H 0.26 6.80 8.32 -40.82 -0.34 6.46 16 35 H 0.07 1.53 8.14 -51.93 -0.42 1.10 16 36 H 0.09 1.89 8.14 -51.93 -0.42 1.46 16 37 H 0.09 2.06 8.14 -51.93 -0.42 1.64 16 38 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 LS Contribution 330.01 15.07 4.97 4.97 Total: -1.00 -32.52 330.01 -7.70 -40.22 By element: Atomic # 1 Polarization: 12.74 SS G_CDS: -5.96 Total: 6.78 kcal Atomic # 6 Polarization: -29.50 SS G_CDS: 0.53 Total: -28.97 kcal Atomic # 7 Polarization: -41.35 SS G_CDS: 0.69 Total: -40.66 kcal Atomic # 8 Polarization: -48.95 SS G_CDS: -2.36 Total: -51.31 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.33 kcal Atomic # 16 Polarization: 53.19 SS G_CDS: -0.55 Total: 52.64 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -32.52 -7.70 -40.22 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001475114140.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.936 kcal (2) G-P(sol) polarization free energy of solvation -32.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds