Wall clock time and date at job start Mon Mar 30 2020 01:59:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.35600 * 118.80154 * 2 1 4 4 C 1.34866 * 121.81078 * 180.02562 * 3 2 1 5 5 C 1.41670 * 119.34590 * 359.73181 * 4 3 2 6 6 O 1.22081 * 121.07168 * 180.25624 * 5 4 3 7 7 C 1.47141 * 117.85649 * 0.52920 * 5 4 3 8 8 C 1.47139 * 120.88607 * 179.72885 * 7 5 4 9 9 O 1.21541 * 120.00087 * 4.37921 * 8 7 5 10 10 O 1.34783 * 119.99642 * 184.37418 * 8 7 5 11 11 C 1.45201 * 116.99810 * 183.38306 * 10 8 7 12 12 C 1.50690 * 112.85464 * 295.74138 * 11 10 8 13 13 H 1.08000 * 120.00678 * 117.65542 * 12 11 10 14 14 C 1.37884 * 119.99992 * 297.66221 * 12 11 10 15 15 N 1.31511 * 120.00244 * 173.42291 * 14 12 11 16 16 Si 1.86799 * 119.99625 * 353.41760 * 14 12 11 17 17 H 1.48503 * 109.47443 * 270.04852 * 16 14 12 18 18 H 1.48502 * 109.47371 * 30.04902 * 16 14 12 19 19 H 1.48498 * 109.47161 * 150.04890 * 16 14 12 20 20 C 1.53785 * 113.61254 * 66.93610 * 11 10 8 21 21 C 1.53958 * 87.01897 * 89.22639 * 20 11 10 22 22 C 1.53777 * 87.11039 * 25.36323 * 21 20 11 23 23 C 1.34315 * 118.80088 * 180.02562 * 2 1 3 24 24 H 1.09006 * 109.47184 * 269.97784 * 1 2 3 25 25 H 1.09003 * 109.47050 * 29.97583 * 1 2 3 26 26 H 1.08996 * 109.47204 * 149.97905 * 1 2 3 27 27 H 1.07993 * 119.09025 * 0.04888 * 3 2 1 28 28 H 1.07996 * 120.31884 * 180.02562 * 4 3 2 29 29 H 0.97000 * 120.00193 * 180.02562 * 15 14 12 30 30 H 1.08996 * 113.61664 * 203.74853 * 20 11 10 31 31 H 1.09002 * 113.61340 * 334.65275 * 20 11 10 32 32 H 1.08999 * 113.54023 * 270.81028 * 21 20 11 33 33 H 1.09005 * 113.73706 * 139.94576 * 21 20 11 34 34 H 1.09004 * 113.61157 * 220.08773 * 22 21 20 35 35 H 1.09000 * 113.69213 * 89.19824 * 22 21 20 36 36 H 1.07997 * 119.82125 * 359.97438 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1182 1.1883 0.0000 4 6 3.4650 1.2591 -0.0005 5 6 4.2232 0.0623 0.0047 6 8 5.4437 0.0897 0.0091 7 6 3.4922 -1.2147 -0.0015 8 6 4.2129 -2.4975 -0.0026 9 8 5.4253 -2.5135 0.0820 10 8 3.5286 -3.6548 -0.0973 11 6 4.2975 -4.8838 -0.0162 12 6 5.2647 -5.0457 -1.1604 13 1 6.3265 -5.0891 -0.9681 14 6 4.7940 -5.1382 -2.4532 15 7 5.6384 -5.1492 -3.4613 16 14 2.9568 -5.2482 -2.7725 17 1 2.5404 -6.6737 -2.7817 18 1 2.2241 -4.5255 -1.7019 19 1 2.6452 -4.6331 -4.0876 20 6 4.9309 -5.1242 1.3643 21 6 3.6294 -5.8530 1.7454 22 6 3.4381 -6.1320 0.2453 23 6 2.1120 -1.1770 -0.0005 24 1 -0.3634 -0.0004 1.0277 25 1 -0.3633 0.8902 -0.5135 26 1 -0.3633 -0.8898 -0.5141 27 1 1.5442 2.1030 0.0008 28 1 3.9605 2.2186 -0.0001 29 1 5.3073 -5.2139 -4.3707 30 1 5.8042 -5.7758 1.3366 31 1 5.1021 -4.2092 1.9315 32 1 2.8697 -5.1952 2.1675 33 1 3.7882 -6.7526 2.3401 34 1 2.4059 -6.0294 -0.0898 35 1 3.9019 -7.0595 -0.0904 36 1 1.5497 -2.0990 -0.0005 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001525500158.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:19 Heat of formation + Delta-G solvation = -41.349551 kcal Electronic energy + Delta-G solvation = -22099.905745 eV Core-core repulsion = 18744.661258 eV Total energy + Delta-G solvation = -3355.244487 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.87394 -39.33765 -37.77436 -36.71669 -34.08755 -32.52608 -32.28999 -31.79352 -27.20883 -26.80441 -24.89906 -24.81880 -22.88279 -22.17481 -20.75516 -18.43837 -17.75137 -17.30796 -16.82325 -16.32312 -15.84824 -15.26260 -15.17637 -14.89620 -14.33069 -14.26443 -13.98254 -13.38450 -13.28645 -13.19870 -12.78459 -12.49960 -12.32084 -12.04324 -11.70855 -11.49893 -11.31569 -10.98299 -10.31960 -10.22083 -9.97125 -9.83290 -9.60643 -9.47469 -9.03783 -8.80878 -8.58063 -8.31300 -7.84775 -6.07202 -4.10439 1.03442 1.41110 2.36912 3.29795 3.33341 3.46937 3.50317 3.74889 4.23086 4.27603 4.36335 4.46502 4.74247 4.74945 4.94090 5.02022 5.21209 5.23346 5.48526 5.52367 5.65451 5.70710 5.82093 5.96282 6.19209 6.28427 6.52780 6.59383 6.60711 6.67512 6.79089 6.83569 7.02225 7.34339 7.58422 7.91738 8.38530 8.53843 9.01827 9.19734 9.55203 11.04444 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.017551 B = 0.006902 C = 0.006764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1594.932327 B = 4055.805614 C = 4138.341301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 N -0.481 5.481 3 C 0.123 3.877 4 C -0.267 4.267 5 C 0.403 3.597 6 O -0.475 6.475 7 C -0.273 4.273 8 C 0.510 3.490 9 O -0.460 6.460 10 O -0.366 6.366 11 C 0.198 3.802 12 C -0.509 4.509 13 H 0.083 0.917 14 C 0.081 3.919 15 N -0.883 5.883 16 Si 0.865 3.135 17 H -0.278 1.278 18 H -0.238 1.238 19 H -0.294 1.294 20 C -0.140 4.140 21 C -0.144 4.144 22 C -0.127 4.127 23 C 0.179 3.821 24 H 0.079 0.921 25 H 0.089 0.911 26 H 0.091 0.909 27 H 0.162 0.838 28 H 0.152 0.848 29 H 0.264 0.736 30 H 0.086 0.914 31 H 0.057 0.943 32 H 0.069 0.931 33 H 0.058 0.942 34 H 0.056 0.944 35 H 0.096 0.904 36 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.577 10.147 8.206 21.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 N -0.169 5.169 3 C -0.001 4.001 4 C -0.292 4.292 5 C 0.288 3.712 6 O -0.355 6.355 7 C -0.282 4.282 8 C 0.350 3.650 9 O -0.344 6.344 10 O -0.285 6.285 11 C 0.163 3.837 12 C -0.546 4.546 13 H 0.101 0.899 14 C -0.124 4.124 15 N -0.520 5.520 16 Si 0.692 3.308 17 H -0.205 1.205 18 H -0.162 1.162 19 H -0.221 1.221 20 C -0.178 4.178 21 C -0.181 4.181 22 C -0.164 4.164 23 C 0.050 3.950 24 H 0.097 0.903 25 H 0.108 0.892 26 H 0.110 0.890 27 H 0.179 0.821 28 H 0.170 0.830 29 H 0.074 0.926 30 H 0.105 0.895 31 H 0.076 0.924 32 H 0.088 0.912 33 H 0.077 0.923 34 H 0.075 0.925 35 H 0.114 0.886 36 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -16.697 10.121 8.044 21.117 hybrid contribution -1.002 -0.037 -0.513 1.126 sum -17.700 10.084 7.532 21.718 Atomic orbital electron populations 1.22439 0.76453 1.05460 1.04114 1.42689 1.08478 1.04601 1.61085 1.21645 0.94282 0.88314 0.95819 1.22437 0.93122 1.01201 1.12400 1.18223 0.89383 0.86909 0.76635 1.90836 1.14255 1.88891 1.41558 1.22156 0.92184 0.95530 1.18324 1.19830 0.86302 0.83233 0.75598 1.90867 1.13942 1.87451 1.42139 1.86485 1.43875 1.14960 1.83160 1.20984 0.89293 0.78692 0.94715 1.21073 0.94375 1.49814 0.89320 0.89934 1.25029 0.97870 0.93445 0.96007 1.69961 1.34778 1.48243 0.98995 0.87066 0.87072 0.78677 0.77963 1.20454 1.16189 1.22051 1.23300 0.96796 0.99866 0.97814 1.22927 0.98730 0.99810 0.96659 1.23217 0.99449 0.98741 0.95000 1.22467 0.93587 0.88912 0.90015 0.90252 0.89189 0.89002 0.82086 0.83015 0.92618 0.89519 0.92444 0.91193 0.92336 0.92501 0.88608 0.80678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.22 10.53 59.84 0.63 0.85 16 2 N -0.48 -4.36 2.97 -124.38 -0.37 -4.73 16 3 C 0.12 1.08 10.17 -17.08 -0.17 0.91 16 4 C -0.27 -3.54 10.01 -39.47 -0.40 -3.94 16 5 C 0.40 8.04 6.96 -34.66 -0.24 7.80 16 6 O -0.48 -11.96 16.42 -15.12 -0.25 -12.21 16 7 C -0.27 -5.36 6.05 -102.73 -0.62 -5.98 16 8 C 0.51 12.61 7.27 34.34 0.25 12.86 16 9 O -0.46 -13.49 13.78 -26.07 -0.36 -13.85 16 10 O -0.37 -8.68 7.11 -40.72 -0.29 -8.97 16 11 C 0.20 4.88 0.10 -90.96 -0.01 4.87 16 12 C -0.51 -15.14 7.89 -34.44 -0.27 -15.41 16 13 H 0.08 2.75 8.06 -52.49 -0.42 2.33 16 14 C 0.08 2.42 5.47 -17.82 -0.10 2.32 16 15 N -0.88 -28.13 13.96 55.43 0.77 -27.35 16 16 Si 0.87 21.53 25.15 -169.99 -4.28 17.25 16 17 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 18 H -0.24 -5.45 5.42 56.52 0.31 -5.14 16 19 H -0.29 -7.38 7.11 56.52 0.40 -6.97 16 20 C -0.14 -3.08 6.93 -25.82 -0.18 -3.26 16 21 C -0.14 -2.60 8.03 -25.83 -0.21 -2.81 16 22 C -0.13 -2.64 5.65 -25.92 -0.15 -2.78 16 23 C 0.18 2.41 9.87 -16.53 -0.16 2.25 16 24 H 0.08 0.19 8.14 -51.93 -0.42 -0.23 16 25 H 0.09 0.14 7.96 -51.93 -0.41 -0.28 16 26 H 0.09 0.31 7.96 -51.93 -0.41 -0.11 16 27 H 0.16 0.61 7.97 -52.49 -0.42 0.19 16 28 H 0.15 1.70 8.06 -52.49 -0.42 1.28 16 29 H 0.26 7.84 8.31 -40.82 -0.34 7.50 16 30 H 0.09 1.90 8.09 -51.93 -0.42 1.48 16 31 H 0.06 1.29 7.40 -51.93 -0.38 0.91 16 32 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.06 1.12 6.79 -51.93 -0.35 0.76 16 35 H 0.10 1.99 8.09 -51.93 -0.42 1.57 16 36 H 0.18 2.05 7.55 -52.49 -0.40 1.66 16 LS Contribution 304.63 15.07 4.59 4.59 Total: -1.00 -41.30 304.63 -6.37 -47.67 By element: Atomic # 1 Polarization: 4.48 SS G_CDS: -4.56 Total: -0.08 kcal Atomic # 6 Polarization: -0.71 SS G_CDS: -1.63 Total: -2.33 kcal Atomic # 7 Polarization: -32.48 SS G_CDS: 0.40 Total: -32.08 kcal Atomic # 8 Polarization: -34.13 SS G_CDS: -0.90 Total: -35.02 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -4.28 Total: 17.25 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -41.30 -6.37 -47.67 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001525500158.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.322 kcal (2) G-P(sol) polarization free energy of solvation -41.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds