Wall clock time and date at job start Mon Mar 30 2020 01:59:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.35600 * 118.80154 * 2 1 4 4 C 1.34866 * 121.81078 * 180.02562 * 3 2 1 5 5 C 1.41670 * 119.34590 * 359.73181 * 4 3 2 6 6 O 1.22081 * 121.07168 * 180.25624 * 5 4 3 7 7 C 1.47141 * 117.85649 * 0.52920 * 5 4 3 8 8 C 1.47139 * 120.88607 * 179.72885 * 7 5 4 9 9 O 1.21541 * 120.00087 * 4.37921 * 8 7 5 10 10 O 1.34783 * 119.99642 * 184.37418 * 8 7 5 11 11 C 1.45201 * 116.99810 * 183.38306 * 10 8 7 12 12 C 1.50690 * 112.85464 * 295.74138 * 11 10 8 13 13 H 1.08000 * 120.00678 * 117.65542 * 12 11 10 14 14 C 1.37884 * 119.99992 * 297.66221 * 12 11 10 15 15 N 1.31511 * 120.00244 * 173.42291 * 14 12 11 16 16 Si 1.86799 * 119.99625 * 353.41760 * 14 12 11 17 17 H 1.48503 * 109.47443 * 270.04852 * 16 14 12 18 18 H 1.48502 * 109.47371 * 30.04902 * 16 14 12 19 19 H 1.48498 * 109.47161 * 150.04890 * 16 14 12 20 20 C 1.53785 * 113.61254 * 66.93610 * 11 10 8 21 21 C 1.53958 * 87.01897 * 89.22639 * 20 11 10 22 22 C 1.53777 * 87.11039 * 25.36323 * 21 20 11 23 23 C 1.34315 * 118.80088 * 180.02562 * 2 1 3 24 24 H 1.09006 * 109.47184 * 269.97784 * 1 2 3 25 25 H 1.09003 * 109.47050 * 29.97583 * 1 2 3 26 26 H 1.08996 * 109.47204 * 149.97905 * 1 2 3 27 27 H 1.07993 * 119.09025 * 0.04888 * 3 2 1 28 28 H 1.07996 * 120.31884 * 180.02562 * 4 3 2 29 29 H 0.97000 * 120.00193 * 180.02562 * 15 14 12 30 30 H 1.08996 * 113.61664 * 203.74853 * 20 11 10 31 31 H 1.09002 * 113.61340 * 334.65275 * 20 11 10 32 32 H 1.08999 * 113.54023 * 270.81028 * 21 20 11 33 33 H 1.09005 * 113.73706 * 139.94576 * 21 20 11 34 34 H 1.09004 * 113.61157 * 220.08773 * 22 21 20 35 35 H 1.09000 * 113.69213 * 89.19824 * 22 21 20 36 36 H 1.07997 * 119.82125 * 359.97438 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1182 1.1883 0.0000 4 6 3.4650 1.2591 -0.0005 5 6 4.2232 0.0623 0.0047 6 8 5.4437 0.0897 0.0091 7 6 3.4922 -1.2147 -0.0015 8 6 4.2129 -2.4975 -0.0026 9 8 5.4253 -2.5135 0.0820 10 8 3.5286 -3.6548 -0.0973 11 6 4.2975 -4.8838 -0.0162 12 6 5.2647 -5.0457 -1.1604 13 1 6.3265 -5.0891 -0.9681 14 6 4.7940 -5.1382 -2.4532 15 7 5.6384 -5.1492 -3.4613 16 14 2.9568 -5.2482 -2.7725 17 1 2.5404 -6.6737 -2.7817 18 1 2.2241 -4.5255 -1.7019 19 1 2.6452 -4.6331 -4.0876 20 6 4.9309 -5.1242 1.3643 21 6 3.6294 -5.8530 1.7454 22 6 3.4381 -6.1320 0.2453 23 6 2.1120 -1.1770 -0.0005 24 1 -0.3634 -0.0004 1.0277 25 1 -0.3633 0.8902 -0.5135 26 1 -0.3633 -0.8898 -0.5141 27 1 1.5442 2.1030 0.0008 28 1 3.9605 2.2186 -0.0001 29 1 5.3073 -5.2139 -4.3707 30 1 5.8042 -5.7758 1.3366 31 1 5.1021 -4.2092 1.9315 32 1 2.8697 -5.1952 2.1675 33 1 3.7882 -6.7526 2.3401 34 1 2.4059 -6.0294 -0.0898 35 1 3.9019 -7.0595 -0.0904 36 1 1.5497 -2.0990 -0.0005 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001525500158.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:18 Heat of formation + Delta-G solvation = -73.104132 kcal Electronic energy + Delta-G solvation = -22101.282727 eV Core-core repulsion = 18744.661258 eV Total energy + Delta-G solvation = -3356.621469 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.00914 -41.08985 -39.20236 -38.46480 -35.97905 -34.56090 -33.53615 -32.96933 -29.02772 -27.73564 -26.63777 -26.14104 -24.35188 -23.68882 -22.26569 -20.14663 -19.50814 -18.51445 -18.26677 -17.70290 -17.23919 -16.78456 -16.65396 -16.56206 -16.03452 -15.55960 -15.38413 -14.92595 -14.79761 -14.63154 -14.16026 -13.67254 -13.52501 -13.26989 -13.19408 -13.17504 -12.89902 -12.64521 -12.12657 -11.99263 -11.88245 -11.63145 -11.31524 -10.99324 -10.70639 -10.68990 -10.36163 -10.33487 -9.09422 -8.36282 -6.47674 -0.19057 0.38287 1.29494 1.36488 1.54196 1.54948 1.89073 2.05259 2.37366 2.79351 3.01715 3.41466 3.66717 3.78179 3.83530 3.92354 4.00131 4.12479 4.24979 4.46985 4.60371 4.63002 4.68099 4.80603 4.82422 4.92923 4.93491 5.06501 5.08519 5.25617 5.33543 5.55092 5.65714 5.72475 5.82080 5.88929 6.34810 6.58794 7.07815 7.20672 7.35040 8.80978 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.017551 B = 0.006902 C = 0.006764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1594.932327 B = 4055.805614 C = 4138.341301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 N -0.459 5.459 3 C 0.171 3.829 4 C -0.296 4.296 5 C 0.377 3.623 6 O -0.572 6.572 7 C -0.349 4.349 8 C 0.503 3.497 9 O -0.534 6.534 10 O -0.350 6.350 11 C 0.177 3.823 12 C -0.523 4.523 13 H 0.009 0.991 14 C 0.009 3.991 15 N -0.947 5.947 16 Si 0.941 3.059 17 H -0.252 1.252 18 H -0.199 1.199 19 H -0.297 1.297 20 C -0.152 4.152 21 C -0.109 4.109 22 C -0.118 4.118 23 C 0.238 3.762 24 H 0.107 0.893 25 H 0.128 0.872 26 H 0.105 0.895 27 H 0.237 0.763 28 H 0.165 0.835 29 H 0.266 0.734 30 H 0.069 0.931 31 H 0.040 0.960 32 H 0.098 0.902 33 H 0.093 0.907 34 H 0.085 0.915 35 H 0.091 0.909 36 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.798 11.424 9.446 29.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 N -0.142 5.142 3 C 0.046 3.954 4 C -0.319 4.319 5 C 0.270 3.730 6 O -0.461 6.461 7 C -0.357 4.357 8 C 0.348 3.652 9 O -0.423 6.423 10 O -0.268 6.268 11 C 0.142 3.858 12 C -0.560 4.560 13 H 0.027 0.973 14 C -0.189 4.189 15 N -0.586 5.586 16 Si 0.761 3.239 17 H -0.176 1.176 18 H -0.121 1.121 19 H -0.224 1.224 20 C -0.190 4.190 21 C -0.146 4.146 22 C -0.156 4.156 23 C 0.103 3.897 24 H 0.125 0.875 25 H 0.147 0.853 26 H 0.124 0.876 27 H 0.253 0.747 28 H 0.183 0.817 29 H 0.075 0.925 30 H 0.087 0.913 31 H 0.058 0.942 32 H 0.116 0.884 33 H 0.111 0.889 34 H 0.104 0.896 35 H 0.109 0.891 36 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -25.026 11.425 9.321 29.047 hybrid contribution 1.429 -0.282 -0.867 1.695 sum -23.597 11.142 8.453 27.431 Atomic orbital electron populations 1.23073 0.71539 1.08251 1.06852 1.43459 1.11310 1.03405 1.55983 1.22581 0.92907 0.90275 0.89652 1.22333 0.94991 0.98962 1.15641 1.19172 0.89011 0.89399 0.75408 1.90781 1.17673 1.90064 1.47534 1.21800 0.94917 0.92713 1.26279 1.20854 0.86092 0.84803 0.73461 1.90834 1.17209 1.88285 1.45990 1.86416 1.42617 1.14575 1.83177 1.21159 0.90636 0.80551 0.93470 1.21229 0.92395 1.50192 0.92181 0.97256 1.26264 1.04995 0.92496 0.95108 1.70167 1.38112 1.50630 0.99687 0.85930 0.78855 0.80575 0.78510 1.17592 1.12054 1.22357 1.23325 0.98996 0.99721 0.96982 1.22819 0.95626 1.00734 0.95416 1.23170 0.99750 0.95706 0.96924 1.22688 0.91141 0.91736 0.84185 0.87471 0.85349 0.87620 0.74719 0.81727 0.92508 0.91252 0.94160 0.88384 0.88867 0.89635 0.89053 0.77657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 -0.08 10.53 127.77 1.34 1.26 16 2 N -0.46 -5.01 2.97 -547.42 -1.63 -6.64 16 3 C 0.17 1.88 10.17 83.34 0.85 2.73 16 4 C -0.30 -7.38 10.01 22.34 0.22 -7.15 16 5 C 0.38 15.97 6.96 25.46 0.18 16.15 16 6 O -0.57 -32.40 16.42 13.51 0.22 -32.18 16 7 C -0.35 -13.87 6.05 -18.64 -0.11 -13.99 16 8 C 0.50 26.31 7.27 70.16 0.51 26.82 16 9 O -0.53 -34.95 13.78 26.17 0.36 -34.59 16 10 O -0.35 -16.50 7.11 -56.94 -0.40 -16.90 16 11 C 0.18 8.94 0.10 -11.02 0.00 8.94 16 12 C -0.52 -33.65 7.89 25.60 0.20 -33.45 16 13 H 0.01 0.69 8.06 -2.91 -0.02 0.67 16 14 C 0.01 0.58 5.47 84.66 0.46 1.04 16 15 N -0.95 -64.78 13.96 21.45 0.30 -64.48 16 16 Si 0.94 44.11 25.15 68.60 1.73 45.83 16 17 H -0.25 -10.71 7.11 99.48 0.71 -10.00 16 18 H -0.20 -7.93 5.42 99.48 0.54 -7.39 16 19 H -0.30 -13.97 7.11 99.48 0.71 -13.26 16 20 C -0.15 -7.00 6.93 31.18 0.22 -6.78 16 21 C -0.11 -3.58 8.03 31.18 0.25 -3.33 16 22 C -0.12 -4.60 5.65 31.12 0.18 -4.42 16 23 C 0.24 5.31 9.87 84.27 0.83 6.14 16 24 H 0.11 -0.55 8.14 -2.38 -0.02 -0.57 16 25 H 0.13 -1.00 7.96 -2.39 -0.02 -1.02 16 26 H 0.11 -0.30 7.96 -2.39 -0.02 -0.32 16 27 H 0.24 -0.63 7.97 -2.91 -0.02 -0.66 16 28 H 0.17 3.54 8.06 -2.91 -0.02 3.52 16 29 H 0.27 16.82 8.31 -92.71 -0.77 16.05 16 30 H 0.07 3.32 8.09 -2.39 -0.02 3.30 16 31 H 0.04 1.94 7.40 -2.39 -0.02 1.92 16 32 H 0.10 2.73 8.14 -2.39 -0.02 2.71 16 33 H 0.09 2.49 8.14 -2.38 -0.02 2.47 16 34 H 0.09 2.86 6.79 -2.39 -0.02 2.85 16 35 H 0.09 3.63 8.09 -2.39 -0.02 3.61 16 36 H 0.21 3.41 7.55 -2.91 -0.02 3.39 16 Total: -1.00 -114.37 304.63 6.63 -107.74 By element: Atomic # 1 Polarization: 6.33 SS G_CDS: 0.92 Total: 7.26 kcal Atomic # 6 Polarization: -11.17 SS G_CDS: 5.13 Total: -6.04 kcal Atomic # 7 Polarization: -69.79 SS G_CDS: -1.33 Total: -71.12 kcal Atomic # 8 Polarization: -83.85 SS G_CDS: 0.18 Total: -83.67 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 1.73 Total: 45.83 kcal Total: -114.37 6.63 -107.74 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001525500158.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.636 kcal (2) G-P(sol) polarization free energy of solvation -114.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -107.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds