Wall clock time and date at job start Mon Mar 30 2020 02:00:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46492 * 120.00125 * 2 1 4 4 C 1.50697 * 109.47391 * 269.99962 * 3 2 1 5 5 H 1.08008 * 119.99826 * 0.02562 * 4 3 2 6 6 C 1.37871 * 120.00561 * 179.97438 * 4 3 2 7 7 N 1.31519 * 120.00002 * 0.02562 * 6 4 3 8 8 Si 1.86804 * 120.00332 * 180.02562 * 6 4 3 9 9 H 1.48500 * 109.47207 * 60.00129 * 8 6 4 10 10 H 1.48502 * 109.47176 * 180.02562 * 8 6 4 11 11 H 1.48498 * 109.46780 * 300.00166 * 8 6 4 12 12 C 1.34773 * 119.99682 * 180.02562 * 2 1 3 13 13 O 1.21284 * 120.00163 * 180.02562 * 12 2 1 14 14 C 1.50702 * 120.00431 * 359.97438 * 12 2 1 15 15 C 1.54416 * 129.01632 * 180.02562 * 14 12 2 16 16 C 1.54414 * 78.89093 * 180.64541 * 15 14 12 17 17 C 1.53006 * 129.00834 * 180.64555 * 16 15 14 18 18 F 1.39897 * 109.47129 * 60.00029 * 17 16 15 19 19 F 1.39900 * 109.46764 * 180.02562 * 17 16 15 20 20 F 1.39895 * 109.46931 * 299.99750 * 17 16 15 21 21 C 1.54883 * 84.49859 * 43.15251 * 16 15 14 22 22 C 1.54888 * 84.49774 * 318.13313 * 16 15 14 23 23 H 1.09007 * 109.46600 * 270.00257 * 1 2 3 24 24 H 1.08996 * 109.47238 * 29.99712 * 1 2 3 25 25 H 1.08990 * 109.47353 * 150.00239 * 1 2 3 26 26 H 1.08999 * 109.47507 * 30.00065 * 3 2 1 27 27 H 1.09000 * 109.47203 * 149.99790 * 3 2 1 28 28 H 0.97001 * 120.00197 * 179.97438 * 7 6 4 29 29 H 1.08996 * 114.93043 * 68.15441 * 15 14 12 30 30 H 1.08999 * 114.98384 * 293.12917 * 15 14 12 31 31 H 1.09006 * 114.97848 * 69.38868 * 21 16 15 32 32 H 1.08990 * 114.98368 * 204.56491 * 21 16 15 33 33 H 1.08994 * 114.98153 * 155.43353 * 22 16 15 34 34 H 1.09000 * 114.97994 * 290.61440 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.4488 1.7037 -1.4208 5 1 2.0975 1.0961 -2.2417 6 6 3.1261 2.8779 -1.6728 7 7 3.5534 3.6180 -0.6732 8 14 3.4368 3.4175 -3.4340 9 1 2.1390 3.5948 -4.1337 10 1 4.1795 4.7035 -3.4340 11 1 4.2395 2.3828 -4.1343 12 6 2.1389 -1.1672 -0.0005 13 8 3.3517 -1.1673 -0.0001 14 6 1.3854 -2.4723 -0.0005 15 6 1.9384 -3.9141 -0.0005 16 6 0.4172 -4.1789 -0.0176 17 6 -0.3278 -5.5153 -0.0174 18 9 0.0069 -6.2356 1.1342 19 9 -1.7068 -5.2805 -0.0368 20 9 0.0354 -6.2517 -1.1501 21 6 0.3817 -3.0411 -1.0679 22 6 0.3558 -3.0265 1.0154 23 1 -0.3633 0.0000 1.0278 24 1 -0.3633 0.8900 -0.5138 25 1 -0.3633 -0.8899 -0.5137 26 1 1.6085 2.0283 0.5138 27 1 3.1499 1.1383 0.5139 28 1 4.0303 4.4439 -0.8504 29 1 2.4463 -4.2113 0.9169 30 1 2.4656 -4.2049 -0.9091 31 1 0.8317 -3.2881 -2.0295 32 1 -0.5715 -2.5187 -1.1485 33 1 -0.5990 -2.5031 1.0649 34 1 0.7817 -3.2598 1.9913 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001542367484.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:56 Heat of formation + Delta-G solvation = -84.614252 kcal Electronic energy + Delta-G solvation = -21947.779695 eV Core-core repulsion = 18048.802369 eV Total energy + Delta-G solvation = -3898.977326 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.103 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -50.24167 -47.78602 -47.77969 -42.26333 -38.35052 -34.91708 -32.62990 -28.71284 -27.74408 -26.24846 -26.09675 -25.80403 -24.28430 -22.15995 -19.99590 -18.56775 -18.56270 -18.22202 -17.23573 -16.55499 -15.74087 -15.18575 -14.82752 -14.78655 -14.58889 -14.45949 -14.36676 -14.21452 -14.12722 -13.93945 -13.93907 -13.00869 -12.58162 -12.23164 -11.99437 -11.84180 -11.66543 -11.64952 -11.42650 -11.19962 -10.96523 -10.59764 -10.55289 -10.48848 -10.18274 -9.69940 -9.10050 -8.47087 -7.74573 -6.08285 -4.13570 2.43450 2.96381 3.29821 3.34556 3.37212 3.37434 3.39652 3.49693 3.78990 4.03306 4.27752 4.40357 4.44035 4.47339 4.51850 5.01442 5.25301 5.26747 5.32831 5.40073 5.62354 5.65997 5.69989 5.74321 5.84588 5.87401 6.16936 6.97707 7.36255 7.44542 7.87300 8.17211 8.29866 8.82338 8.98094 9.51704 10.99821 Molecular weight = 277.10amu Principal moments of inertia in cm(-1) A = 0.035332 B = 0.004061 C = 0.004001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.294161 B = 6892.515295 C = 6997.409077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.592 5.592 3 C 0.245 3.755 4 C -0.529 4.529 5 H 0.057 0.943 6 C 0.062 3.938 7 N -0.894 5.894 8 Si 0.899 3.101 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.276 1.276 12 C 0.565 3.435 13 O -0.529 6.529 14 C -0.138 4.138 15 C -0.066 4.066 16 C -0.226 4.226 17 C 0.521 3.479 18 F -0.177 7.177 19 F -0.178 7.178 20 F -0.177 7.177 21 C -0.079 4.079 22 C -0.075 4.075 23 H 0.046 0.954 24 H 0.075 0.925 25 H 0.061 0.939 26 H 0.035 0.965 27 H 0.045 0.955 28 H 0.265 0.735 29 H 0.089 0.911 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.094 0.906 33 H 0.093 0.907 34 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.603 -15.744 2.468 19.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.323 5.323 3 C 0.126 3.874 4 C -0.568 4.568 5 H 0.076 0.924 6 C -0.140 4.140 7 N -0.533 5.533 8 Si 0.726 3.274 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.201 1.201 12 C 0.350 3.650 13 O -0.406 6.406 14 C -0.142 4.142 15 C -0.104 4.104 16 C -0.228 4.228 17 C 0.467 3.533 18 F -0.159 7.159 19 F -0.159 7.159 20 F -0.158 7.158 21 C -0.116 4.116 22 C -0.113 4.113 23 H 0.064 0.936 24 H 0.094 0.906 25 H 0.079 0.921 26 H 0.053 0.947 27 H 0.063 0.937 28 H 0.074 0.926 29 H 0.107 0.893 30 H 0.109 0.891 31 H 0.109 0.891 32 H 0.112 0.888 33 H 0.111 0.889 34 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -9.873 -15.549 2.520 18.590 hybrid contribution -0.113 0.052 -1.000 1.008 sum -9.986 -15.497 1.519 18.498 Atomic orbital electron populations 1.21827 0.81337 1.02896 1.00613 1.48053 1.06331 1.07368 1.70499 1.19354 0.92596 0.77700 0.97702 1.21375 1.36858 1.06402 0.92157 0.92441 1.24929 0.95259 0.96323 0.97492 1.69920 1.38186 1.14365 1.30836 0.86547 0.78386 0.77863 0.84563 1.20223 1.21134 1.20149 1.18203 0.86632 0.82340 0.77865 1.90706 1.13261 1.86597 1.49989 1.24258 0.96670 0.94701 0.98557 1.23681 0.90378 0.92359 1.03957 1.25028 1.01099 0.92323 1.04339 1.18502 0.76835 0.84503 0.73441 1.93192 1.92247 1.79963 1.50461 1.93191 1.31942 1.94576 1.96175 1.93194 1.91540 1.79165 1.51937 1.24573 0.99295 0.91421 0.96299 1.24058 0.99130 0.91514 0.96571 0.93588 0.90592 0.92089 0.94694 0.93678 0.92584 0.89256 0.89144 0.89054 0.88761 0.88890 0.89316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.16 9.70 59.85 0.58 1.74 16 2 N -0.59 -12.08 2.86 -182.96 -0.52 -12.60 16 3 C 0.25 6.25 5.16 -5.20 -0.03 6.22 16 4 C -0.53 -14.68 9.39 -34.44 -0.32 -15.01 16 5 H 0.06 1.59 7.81 -52.48 -0.41 1.18 16 6 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 7 N -0.89 -26.16 13.29 55.43 0.74 -25.42 16 8 Si 0.90 21.51 29.54 -169.99 -5.02 16.49 16 9 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 10 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 11 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 12 C 0.57 11.40 7.78 -10.99 -0.09 11.31 16 13 O -0.53 -13.11 16.68 5.55 0.09 -13.02 16 14 C -0.14 -1.98 2.53 -171.00 -0.43 -2.41 16 15 C -0.07 -0.81 7.78 -26.70 -0.21 -1.02 16 16 C -0.23 -2.45 2.89 -171.12 -0.49 -2.94 16 17 C 0.52 5.56 3.63 37.16 0.13 5.69 16 18 F -0.18 -1.95 17.32 2.25 0.04 -1.91 16 19 F -0.18 -1.90 17.32 2.25 0.04 -1.87 16 20 F -0.18 -1.98 17.32 2.25 0.04 -1.94 16 21 C -0.08 -0.90 7.23 -24.72 -0.18 -1.08 16 22 C -0.08 -0.82 7.35 -25.98 -0.19 -1.01 16 23 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 24 H 0.08 1.18 8.07 -51.93 -0.42 0.76 16 25 H 0.06 0.75 4.19 -51.93 -0.22 0.53 16 26 H 0.04 0.90 8.07 -51.93 -0.42 0.48 16 27 H 0.05 1.30 7.42 -51.93 -0.39 0.91 16 28 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 29 H 0.09 1.04 7.94 -51.93 -0.41 0.63 16 30 H 0.09 1.09 7.91 -51.93 -0.41 0.68 16 31 H 0.09 1.03 7.91 -51.93 -0.41 0.62 16 32 H 0.09 0.94 6.35 -51.93 -0.33 0.61 16 33 H 0.09 0.87 7.37 -51.93 -0.38 0.48 16 34 H 0.09 0.91 7.93 -51.93 -0.41 0.50 16 LS Contribution 301.96 15.07 4.55 4.55 Total: -1.00 -31.51 301.96 -5.14 -36.64 By element: Atomic # 1 Polarization: -0.30 SS G_CDS: -3.77 Total: -4.06 kcal Atomic # 6 Polarization: 4.47 SS G_CDS: -1.32 Total: 3.14 kcal Atomic # 7 Polarization: -38.24 SS G_CDS: 0.21 Total: -38.03 kcal Atomic # 8 Polarization: -13.11 SS G_CDS: 0.09 Total: -13.02 kcal Atomic # 9 Polarization: -5.83 SS G_CDS: 0.12 Total: -5.72 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -31.51 -5.14 -36.64 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001542367484.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.970 kcal (2) G-P(sol) polarization free energy of solvation -31.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds