Wall clock time and date at job start Mon Mar 30 2020 02:00:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46492 * 120.00125 * 2 1 4 4 C 1.50697 * 109.47391 * 269.99962 * 3 2 1 5 5 H 1.08008 * 119.99826 * 0.02562 * 4 3 2 6 6 C 1.37871 * 120.00561 * 179.97438 * 4 3 2 7 7 N 1.31519 * 120.00002 * 0.02562 * 6 4 3 8 8 Si 1.86804 * 120.00332 * 180.02562 * 6 4 3 9 9 H 1.48500 * 109.47207 * 60.00129 * 8 6 4 10 10 H 1.48502 * 109.47176 * 180.02562 * 8 6 4 11 11 H 1.48498 * 109.46780 * 300.00166 * 8 6 4 12 12 C 1.34773 * 119.99682 * 180.02562 * 2 1 3 13 13 O 1.21284 * 120.00163 * 180.02562 * 12 2 1 14 14 C 1.50702 * 120.00431 * 359.97438 * 12 2 1 15 15 C 1.54416 * 129.01632 * 180.02562 * 14 12 2 16 16 C 1.54414 * 78.89093 * 180.64541 * 15 14 12 17 17 C 1.53006 * 129.00834 * 180.64555 * 16 15 14 18 18 F 1.39897 * 109.47129 * 60.00029 * 17 16 15 19 19 F 1.39900 * 109.46764 * 180.02562 * 17 16 15 20 20 F 1.39895 * 109.46931 * 299.99750 * 17 16 15 21 21 C 1.54883 * 84.49859 * 43.15251 * 16 15 14 22 22 C 1.54888 * 84.49774 * 318.13313 * 16 15 14 23 23 H 1.09007 * 109.46600 * 270.00257 * 1 2 3 24 24 H 1.08996 * 109.47238 * 29.99712 * 1 2 3 25 25 H 1.08990 * 109.47353 * 150.00239 * 1 2 3 26 26 H 1.08999 * 109.47507 * 30.00065 * 3 2 1 27 27 H 1.09000 * 109.47203 * 149.99790 * 3 2 1 28 28 H 0.97001 * 120.00197 * 179.97438 * 7 6 4 29 29 H 1.08996 * 114.93043 * 68.15441 * 15 14 12 30 30 H 1.08999 * 114.98384 * 293.12917 * 15 14 12 31 31 H 1.09006 * 114.97848 * 69.38868 * 21 16 15 32 32 H 1.08990 * 114.98368 * 204.56491 * 21 16 15 33 33 H 1.08994 * 114.98153 * 155.43353 * 22 16 15 34 34 H 1.09000 * 114.97994 * 290.61440 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.4488 1.7037 -1.4208 5 1 2.0975 1.0961 -2.2417 6 6 3.1261 2.8779 -1.6728 7 7 3.5534 3.6180 -0.6732 8 14 3.4368 3.4175 -3.4340 9 1 2.1390 3.5948 -4.1337 10 1 4.1795 4.7035 -3.4340 11 1 4.2395 2.3828 -4.1343 12 6 2.1389 -1.1672 -0.0005 13 8 3.3517 -1.1673 -0.0001 14 6 1.3854 -2.4723 -0.0005 15 6 1.9384 -3.9141 -0.0005 16 6 0.4172 -4.1789 -0.0176 17 6 -0.3278 -5.5153 -0.0174 18 9 0.0069 -6.2356 1.1342 19 9 -1.7068 -5.2805 -0.0368 20 9 0.0354 -6.2517 -1.1501 21 6 0.3817 -3.0411 -1.0679 22 6 0.3558 -3.0265 1.0154 23 1 -0.3633 0.0000 1.0278 24 1 -0.3633 0.8900 -0.5138 25 1 -0.3633 -0.8899 -0.5137 26 1 1.6085 2.0283 0.5138 27 1 3.1499 1.1383 0.5139 28 1 4.0303 4.4439 -0.8504 29 1 2.4463 -4.2113 0.9169 30 1 2.4656 -4.2049 -0.9091 31 1 0.8317 -3.2881 -2.0295 32 1 -0.5715 -2.5187 -1.1485 33 1 -0.5990 -2.5031 1.0649 34 1 0.7817 -3.2598 1.9913 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001542367484.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:56 Heat of formation + Delta-G solvation = -103.725167 kcal Electronic energy + Delta-G solvation = -21948.608407 eV Core-core repulsion = 18048.802369 eV Total energy + Delta-G solvation = -3899.806037 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.103 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -51.08053 -48.62805 -48.61314 -43.26764 -39.96590 -36.64476 -34.70169 -30.31011 -29.00514 -27.58443 -26.97795 -26.86416 -25.93480 -23.68758 -21.15861 -19.45913 -19.39935 -19.37296 -18.68311 -18.36891 -17.35656 -16.71443 -16.20327 -15.95163 -15.69835 -15.61253 -15.34662 -15.22858 -15.04815 -14.77383 -14.77299 -14.53842 -14.28603 -13.77555 -13.48093 -13.20421 -12.91579 -12.81079 -12.73937 -12.66106 -12.46877 -12.28423 -12.20012 -11.73208 -11.48133 -11.43099 -10.70708 -10.63682 -9.46678 -8.22334 -6.37172 1.37806 1.42010 1.48405 1.54016 1.56412 2.21675 2.41296 2.48783 2.49905 2.73105 3.03227 3.07827 3.25748 3.37410 3.61172 3.61536 3.74725 4.27958 4.46804 4.48436 4.63060 4.70569 4.75268 4.76810 4.82082 4.84152 4.98764 5.04054 5.22123 5.54362 5.81270 6.04764 6.67564 6.74087 7.25997 7.41666 8.84734 Molecular weight = 277.10amu Principal moments of inertia in cm(-1) A = 0.035332 B = 0.004061 C = 0.004001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.294161 B = 6892.515295 C = 6997.409077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.598 5.598 3 C 0.258 3.742 4 C -0.544 4.544 5 H 0.055 0.945 6 C 0.009 3.991 7 N -0.928 5.928 8 Si 0.967 3.033 9 H -0.259 1.259 10 H -0.279 1.279 11 H -0.278 1.278 12 C 0.558 3.442 13 O -0.592 6.592 14 C -0.169 4.169 15 C -0.071 4.071 16 C -0.205 4.205 17 C 0.529 3.471 18 F -0.178 7.178 19 F -0.174 7.174 20 F -0.180 7.180 21 C -0.068 4.068 22 C -0.059 4.059 23 H 0.074 0.926 24 H 0.069 0.931 25 H 0.093 0.907 26 H 0.029 0.971 27 H -0.001 1.001 28 H 0.268 0.732 29 H 0.092 0.908 30 H 0.087 0.913 31 H 0.092 0.908 32 H 0.118 0.882 33 H 0.119 0.881 34 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.883 -16.907 1.659 21.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.328 5.328 3 C 0.137 3.863 4 C -0.583 4.583 5 H 0.073 0.927 6 C -0.190 4.190 7 N -0.568 5.568 8 Si 0.791 3.209 9 H -0.184 1.184 10 H -0.204 1.204 11 H -0.204 1.204 12 C 0.346 3.654 13 O -0.473 6.473 14 C -0.173 4.173 15 C -0.108 4.108 16 C -0.207 4.207 17 C 0.475 3.525 18 F -0.159 7.159 19 F -0.155 7.155 20 F -0.161 7.161 21 C -0.105 4.105 22 C -0.097 4.097 23 H 0.092 0.908 24 H 0.087 0.913 25 H 0.112 0.888 26 H 0.047 0.953 27 H 0.017 0.983 28 H 0.076 0.924 29 H 0.110 0.890 30 H 0.106 0.894 31 H 0.110 0.890 32 H 0.136 0.864 33 H 0.137 0.863 34 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -12.217 -16.732 1.715 20.788 hybrid contribution 0.608 0.393 -0.699 1.007 sum -11.609 -16.339 1.015 20.069 Atomic orbital electron populations 1.22128 0.77757 1.04194 1.02877 1.48044 1.08530 1.05929 1.70293 1.18821 0.91191 0.80060 0.96216 1.21664 1.37050 1.06605 0.92968 0.92716 1.25841 0.94852 0.96396 1.01918 1.70041 1.38810 1.14815 1.33100 0.85480 0.78873 0.77326 0.79209 1.18366 1.20415 1.20394 1.19055 0.86302 0.83985 0.76045 1.90658 1.16232 1.87773 1.52619 1.23935 0.98483 0.92242 1.02592 1.23766 0.91878 0.91033 1.04156 1.24686 0.99559 0.92386 1.04041 1.18309 0.76835 0.84058 0.73304 1.93199 1.92275 1.79953 1.50507 1.93205 1.31600 1.94529 1.96151 1.93198 1.91588 1.79210 1.52108 1.24626 0.99133 0.91038 0.95731 1.24100 0.98866 0.90627 0.96059 0.90779 0.91253 0.88831 0.95343 0.98277 0.92362 0.88956 0.89423 0.88982 0.86370 0.86319 0.88593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.01 9.70 127.77 1.24 3.25 16 2 N -0.60 -24.62 2.86 -851.15 -2.43 -27.05 16 3 C 0.26 13.70 5.16 85.63 0.44 14.15 16 4 C -0.54 -30.90 9.39 25.60 0.24 -30.66 16 5 H 0.05 3.06 7.81 -2.91 -0.02 3.03 16 6 C 0.01 0.52 5.46 84.65 0.46 0.98 16 7 N -0.93 -55.58 13.29 21.45 0.28 -55.30 16 8 Si 0.97 44.28 29.54 68.60 2.03 46.31 16 9 H -0.26 -11.08 7.11 99.48 0.71 -10.37 16 10 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 11 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 12 C 0.56 22.88 7.78 87.66 0.68 23.57 16 13 O -0.59 -30.88 16.68 -3.04 -0.05 -30.93 16 14 C -0.17 -4.58 2.53 -62.86 -0.16 -4.74 16 15 C -0.07 -1.64 7.78 30.61 0.24 -1.40 16 16 C -0.21 -3.78 2.89 -62.94 -0.18 -3.96 16 17 C 0.53 9.55 3.63 71.98 0.26 9.81 16 18 F -0.18 -3.39 17.32 44.97 0.78 -2.62 16 19 F -0.17 -3.06 17.32 44.97 0.78 -2.29 16 20 F -0.18 -3.53 17.32 44.97 0.78 -2.75 16 21 C -0.07 -1.34 7.23 31.90 0.23 -1.11 16 22 C -0.06 -1.09 7.35 31.08 0.23 -0.86 16 23 H 0.07 1.67 8.14 -2.38 -0.02 1.65 16 24 H 0.07 2.04 8.07 -2.39 -0.02 2.02 16 25 H 0.09 1.96 4.19 -2.39 -0.01 1.95 16 26 H 0.03 1.52 8.07 -2.39 -0.02 1.50 16 27 H 0.00 -0.06 7.42 -2.39 -0.02 -0.07 16 28 H 0.27 15.05 8.31 -92.71 -0.77 14.28 16 29 H 0.09 2.06 7.94 -2.39 -0.02 2.04 16 30 H 0.09 2.05 7.91 -2.39 -0.02 2.04 16 31 H 0.09 1.84 7.91 -2.38 -0.02 1.82 16 32 H 0.12 1.77 6.35 -2.39 -0.02 1.76 16 33 H 0.12 1.61 7.37 -2.39 -0.02 1.59 16 34 H 0.10 1.67 7.93 -2.39 -0.02 1.65 16 Total: -1.00 -71.45 301.96 6.98 -64.47 By element: Atomic # 1 Polarization: 0.00 SS G_CDS: 1.13 Total: 1.13 kcal Atomic # 6 Polarization: 5.34 SS G_CDS: 3.68 Total: 9.02 kcal Atomic # 7 Polarization: -80.21 SS G_CDS: -2.15 Total: -82.35 kcal Atomic # 8 Polarization: -30.88 SS G_CDS: -0.05 Total: -30.93 kcal Atomic # 9 Polarization: -9.99 SS G_CDS: 2.34 Total: -7.65 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.31 kcal Total: -71.45 6.98 -64.47 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001542367484.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.258 kcal (2) G-P(sol) polarization free energy of solvation -71.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds