Wall clock time and date at job start Mon Mar 30 2020 01:43:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08993 * 109.46927 * 2 1 4 4 N 1.46504 * 109.46391 * 240.00879 * 2 1 3 5 5 C 1.34775 * 120.00058 * 85.00382 * 4 2 1 6 6 O 1.21285 * 120.00133 * 359.97438 * 5 4 2 7 7 C 1.50705 * 119.99899 * 179.97438 * 5 4 2 8 8 H 1.08994 * 109.47078 * 59.99747 * 7 5 4 9 9 C 1.50698 * 109.47081 * 299.99240 * 7 5 4 10 10 H 1.08001 * 119.99688 * 324.88722 * 9 7 5 11 11 C 1.37876 * 120.00162 * 144.88180 * 9 7 5 12 12 N 1.31516 * 119.99496 * 5.19222 * 11 9 7 13 13 Si 1.86796 * 120.00089 * 185.19496 * 11 9 7 14 14 H 1.48500 * 109.46908 * 90.00229 * 13 11 9 15 15 H 1.48502 * 109.46858 * 209.99856 * 13 11 9 16 16 H 1.48499 * 109.47447 * 329.99964 * 13 11 9 17 17 C 1.50707 * 109.46831 * 179.97438 * 7 5 4 18 18 C 1.38234 * 120.00021 * 66.00962 * 17 7 5 19 19 C 1.38236 * 120.00003 * 179.80601 * 18 17 7 20 20 C 1.38232 * 119.99669 * 0.39839 * 19 18 17 21 21 C 1.38237 * 120.00520 * 359.85993 * 20 19 18 22 22 C 1.38232 * 119.99829 * 246.27947 * 17 7 5 23 23 C 1.50698 * 109.47291 * 120.01307 * 2 1 3 24 24 O 1.20819 * 120.00156 * 120.00193 * 23 2 1 25 25 O 1.34232 * 119.99436 * 299.99224 * 23 2 1 26 26 H 1.08998 * 109.47954 * 59.99146 * 1 2 3 27 27 H 1.09001 * 109.47228 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46960 * 299.98819 * 1 2 3 29 29 H 0.97000 * 120.00087 * 264.99637 * 4 2 1 30 30 H 0.97000 * 119.99757 * 179.97438 * 12 11 9 31 31 H 1.08006 * 119.99814 * 0.02562 * 18 17 7 32 32 H 1.08001 * 119.99684 * 180.22938 * 19 18 17 33 33 H 1.07999 * 119.99757 * 179.82798 * 20 19 18 34 34 H 1.07997 * 120.00077 * 179.97438 * 21 20 19 35 35 H 1.08002 * 120.00082 * 359.97438 * 22 17 7 36 36 H 0.96705 * 116.99487 * 180.02562 * 25 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0182 -0.6905 -1.1964 5 6 2.1469 -0.0180 -2.3572 6 8 1.8581 1.1588 -2.4116 7 6 2.6496 -0.7281 -3.5877 8 1 1.9773 -1.5503 -3.8328 9 6 4.0312 -1.2698 -3.3258 10 1 4.7178 -0.7185 -2.7005 11 6 4.4188 -2.4693 -3.8844 12 7 3.6221 -3.0902 -4.7267 13 14 6.0753 -3.2124 -3.4449 14 1 5.9226 -4.0971 -2.2620 15 1 6.5827 -4.0050 -4.5936 16 1 7.0373 -2.1260 -3.1296 17 6 2.6996 0.2403 -4.7414 18 6 3.5831 1.3031 -4.7139 19 6 3.6318 2.1891 -5.7738 20 6 2.7911 2.0169 -6.8576 21 6 1.9038 0.9572 -6.8827 22 6 1.8580 0.0690 -5.8245 23 6 2.0324 -0.7107 1.2303 24 8 2.7270 -1.6929 1.1192 25 8 1.7082 -0.2522 2.4495 26 1 -0.3635 0.5139 -0.8898 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5137 0.8901 29 1 2.2489 -1.6316 -1.1530 30 1 3.8949 -3.9339 -5.1200 31 1 4.2379 1.4392 -3.8657 32 1 4.3247 3.0172 -5.7540 33 1 2.8272 2.7107 -7.6845 34 1 1.2468 0.8230 -7.7293 35 1 1.1650 -0.7591 -5.8442 36 1 2.0543 -0.7411 3.2087 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001573559493.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:50 Heat of formation + Delta-G solvation = -111.339750 kcal Electronic energy + Delta-G solvation = -21463.162742 eV Core-core repulsion = 18104.883252 eV Total energy + Delta-G solvation = -3358.279490 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.45508 -39.10154 -37.77107 -36.18109 -34.61036 -33.66011 -31.16138 -30.32885 -29.92616 -27.24585 -25.06037 -23.86927 -21.73567 -21.53881 -20.34207 -19.49424 -17.95389 -17.24729 -16.69000 -15.96706 -15.80994 -15.45919 -15.10918 -14.44289 -14.27929 -13.90215 -13.68257 -13.37264 -12.91098 -12.60171 -12.41674 -12.31885 -12.13185 -11.69261 -11.60371 -11.58427 -11.42008 -11.01400 -10.99586 -10.42490 -10.37870 -10.26326 -10.01512 -9.42633 -8.82912 -8.67013 -8.59184 -7.93529 -7.60657 -6.26203 -4.32502 2.19204 2.38239 2.40524 2.83164 3.23612 3.30219 3.33094 3.62244 3.92828 4.30884 4.83158 5.05604 5.10644 5.13777 5.28448 5.67330 5.73247 5.79637 5.83145 5.91190 6.19312 6.20690 6.28775 6.43611 6.50131 6.60338 6.85135 6.97513 6.98567 7.17260 7.38077 7.45184 7.64054 7.76310 7.84831 7.95316 8.06648 8.26041 8.70658 9.10644 9.33844 10.82078 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.013283 B = 0.007143 C = 0.005162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2107.490801 B = 3918.811334 C = 5422.843172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.154 3.846 3 H 0.121 0.879 4 N -0.718 5.718 5 C 0.534 3.466 6 O -0.563 6.563 7 C 0.053 3.947 8 H 0.091 0.909 9 C -0.515 4.515 10 H 0.063 0.937 11 C 0.075 3.925 12 N -0.877 5.877 13 Si 0.899 3.101 14 H -0.276 1.276 15 H -0.285 1.285 16 H -0.272 1.272 17 C -0.009 4.009 18 C -0.085 4.085 19 C -0.134 4.134 20 C -0.148 4.148 21 C -0.132 4.132 22 C -0.117 4.117 23 C 0.474 3.526 24 O -0.501 6.501 25 O -0.515 6.515 26 H 0.079 0.921 27 H 0.061 0.939 28 H 0.073 0.927 29 H 0.415 0.585 30 H 0.267 0.733 31 H 0.110 0.890 32 H 0.106 0.894 33 H 0.104 0.896 34 H 0.106 0.894 35 H 0.112 0.888 36 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.001 4.294 7.003 9.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.047 3.953 3 H 0.138 0.862 4 N -0.374 5.374 5 C 0.324 3.676 6 O -0.442 6.442 7 C 0.032 3.968 8 H 0.109 0.891 9 C -0.553 4.553 10 H 0.081 0.919 11 C -0.130 4.130 12 N -0.512 5.512 13 Si 0.726 3.274 14 H -0.202 1.202 15 H -0.211 1.211 16 H -0.197 1.197 17 C -0.010 4.010 18 C -0.104 4.104 19 C -0.152 4.152 20 C -0.167 4.167 21 C -0.150 4.150 22 C -0.135 4.135 23 C 0.315 3.685 24 O -0.388 6.388 25 O -0.326 6.326 26 H 0.097 0.903 27 H 0.080 0.920 28 H 0.092 0.908 29 H 0.253 0.747 30 H 0.077 0.923 31 H 0.128 0.872 32 H 0.124 0.876 33 H 0.123 0.877 34 H 0.124 0.876 35 H 0.130 0.870 36 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges -5.175 4.891 6.473 9.623 hybrid contribution 1.397 -1.330 0.697 2.051 sum -3.778 3.561 7.170 8.852 Atomic orbital electron populations 1.22126 0.92507 1.02986 1.03850 1.20193 0.95756 0.97959 0.81424 0.86187 1.45905 1.68728 1.15302 1.07476 1.21792 0.74074 0.86792 0.84913 1.90589 1.51147 1.16765 1.85690 1.18100 0.99493 0.93510 0.85648 0.89134 1.20668 0.97060 1.05522 1.32035 0.91897 1.24957 0.97562 0.96563 0.93950 1.69913 1.36849 1.16747 1.27733 0.86466 0.83456 0.79362 0.78123 1.20203 1.21082 1.19664 1.19994 0.92251 0.93060 0.95743 1.20822 0.98002 0.94127 0.97401 1.20945 0.99818 0.99623 0.94858 1.20794 0.98445 0.98964 0.98463 1.20898 0.99668 0.96041 0.98384 1.20977 0.99471 0.98717 0.94341 1.23701 0.77109 0.82743 0.84965 1.90765 1.35133 1.25946 1.86910 1.84518 1.72350 1.59107 1.16661 0.90252 0.92009 0.90820 0.74709 0.92335 0.87153 0.87618 0.87740 0.87567 0.86994 0.73238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.98 9.42 37.16 0.35 -1.63 16 2 C 0.15 2.33 3.09 -69.08 -0.21 2.12 16 3 H 0.12 1.86 7.58 -51.93 -0.39 1.47 16 4 N -0.72 -13.43 4.85 -54.93 -0.27 -13.70 16 5 C 0.53 11.60 7.01 -10.98 -0.08 11.52 16 6 O -0.56 -12.99 15.08 5.55 0.08 -12.91 16 7 C 0.05 1.27 2.38 -94.07 -0.22 1.04 16 8 H 0.09 2.26 7.12 -51.93 -0.37 1.89 16 9 C -0.52 -13.07 7.47 -34.44 -0.26 -13.33 16 10 H 0.06 1.63 7.82 -52.49 -0.41 1.22 16 11 C 0.07 1.93 5.45 -17.82 -0.10 1.83 16 12 N -0.88 -23.35 12.84 55.43 0.71 -22.64 16 13 Si 0.90 20.53 29.54 -169.99 -5.02 15.51 16 14 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 15 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 16 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 17 C -0.01 -0.22 4.30 -104.62 -0.45 -0.67 16 18 C -0.09 -1.92 8.31 -39.58 -0.33 -2.24 16 19 C -0.13 -2.65 10.05 -39.58 -0.40 -3.04 16 20 C -0.15 -2.75 10.05 -39.58 -0.40 -3.15 16 21 C -0.13 -2.53 10.05 -39.58 -0.40 -2.93 16 22 C -0.12 -2.54 9.67 -39.58 -0.38 -2.92 16 23 C 0.47 6.70 7.69 36.00 0.28 6.97 16 24 O -0.50 -8.74 16.60 -18.74 -0.31 -9.05 16 25 O -0.51 -5.27 13.33 -39.26 -0.52 -5.79 16 26 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 27 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.07 0.76 8.11 -51.93 -0.42 0.34 16 29 H 0.42 8.04 7.68 -40.82 -0.31 7.73 16 30 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 31 H 0.11 2.51 7.90 -52.48 -0.41 2.09 16 32 H 0.11 1.78 8.06 -52.49 -0.42 1.36 16 33 H 0.10 1.61 8.06 -52.49 -0.42 1.18 16 34 H 0.11 1.72 8.06 -52.49 -0.42 1.30 16 35 H 0.11 2.34 7.96 -52.49 -0.42 1.92 16 36 H 0.41 2.39 9.10 45.56 0.41 2.81 16 LS Contribution 320.50 15.07 4.83 4.83 Total: -1.00 -30.53 320.50 -6.67 -37.20 By element: Atomic # 1 Polarization: 16.55 SS G_CDS: -3.57 Total: 12.97 kcal Atomic # 6 Polarization: -3.83 SS G_CDS: -2.60 Total: -6.43 kcal Atomic # 7 Polarization: -36.78 SS G_CDS: 0.45 Total: -36.34 kcal Atomic # 8 Polarization: -27.00 SS G_CDS: -0.75 Total: -27.75 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -30.53 -6.67 -37.20 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001573559493.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.138 kcal (2) G-P(sol) polarization free energy of solvation -30.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds