Wall clock time and date at job start Mon Mar 30 2020 01:43:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08993 * 109.46927 * 2 1 4 4 N 1.46504 * 109.46391 * 240.00879 * 2 1 3 5 5 C 1.34775 * 120.00058 * 85.00382 * 4 2 1 6 6 O 1.21285 * 120.00133 * 359.97438 * 5 4 2 7 7 C 1.50705 * 119.99899 * 179.97438 * 5 4 2 8 8 H 1.08994 * 109.47078 * 59.99747 * 7 5 4 9 9 C 1.50698 * 109.47081 * 299.99240 * 7 5 4 10 10 H 1.08001 * 119.99688 * 324.88722 * 9 7 5 11 11 C 1.37876 * 120.00162 * 144.88180 * 9 7 5 12 12 N 1.31516 * 119.99496 * 5.19222 * 11 9 7 13 13 Si 1.86796 * 120.00089 * 185.19496 * 11 9 7 14 14 H 1.48500 * 109.46908 * 90.00229 * 13 11 9 15 15 H 1.48502 * 109.46858 * 209.99856 * 13 11 9 16 16 H 1.48499 * 109.47447 * 329.99964 * 13 11 9 17 17 C 1.50707 * 109.46831 * 179.97438 * 7 5 4 18 18 C 1.38234 * 120.00021 * 66.00962 * 17 7 5 19 19 C 1.38236 * 120.00003 * 179.80601 * 18 17 7 20 20 C 1.38232 * 119.99669 * 0.39839 * 19 18 17 21 21 C 1.38237 * 120.00520 * 359.85993 * 20 19 18 22 22 C 1.38232 * 119.99829 * 246.27947 * 17 7 5 23 23 C 1.50698 * 109.47291 * 120.01307 * 2 1 3 24 24 O 1.20819 * 120.00156 * 120.00193 * 23 2 1 25 25 O 1.34232 * 119.99436 * 299.99224 * 23 2 1 26 26 H 1.08998 * 109.47954 * 59.99146 * 1 2 3 27 27 H 1.09001 * 109.47228 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46960 * 299.98819 * 1 2 3 29 29 H 0.97000 * 120.00087 * 264.99637 * 4 2 1 30 30 H 0.97000 * 119.99757 * 179.97438 * 12 11 9 31 31 H 1.08006 * 119.99814 * 0.02562 * 18 17 7 32 32 H 1.08001 * 119.99684 * 180.22938 * 19 18 17 33 33 H 1.07999 * 119.99757 * 179.82798 * 20 19 18 34 34 H 1.07997 * 120.00077 * 179.97438 * 21 20 19 35 35 H 1.08002 * 120.00082 * 359.97438 * 22 17 7 36 36 H 0.96705 * 116.99487 * 180.02562 * 25 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0182 -0.6905 -1.1964 5 6 2.1469 -0.0180 -2.3572 6 8 1.8581 1.1588 -2.4116 7 6 2.6496 -0.7281 -3.5877 8 1 1.9773 -1.5503 -3.8328 9 6 4.0312 -1.2698 -3.3258 10 1 4.7178 -0.7185 -2.7005 11 6 4.4188 -2.4693 -3.8844 12 7 3.6221 -3.0902 -4.7267 13 14 6.0753 -3.2124 -3.4449 14 1 5.9226 -4.0971 -2.2620 15 1 6.5827 -4.0050 -4.5936 16 1 7.0373 -2.1260 -3.1296 17 6 2.6996 0.2403 -4.7414 18 6 3.5831 1.3031 -4.7139 19 6 3.6318 2.1891 -5.7738 20 6 2.7911 2.0169 -6.8576 21 6 1.9038 0.9572 -6.8827 22 6 1.8580 0.0690 -5.8245 23 6 2.0324 -0.7107 1.2303 24 8 2.7270 -1.6929 1.1192 25 8 1.7082 -0.2522 2.4495 26 1 -0.3635 0.5139 -0.8898 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5137 0.8901 29 1 2.2489 -1.6316 -1.1530 30 1 3.8949 -3.9339 -5.1200 31 1 4.2379 1.4392 -3.8657 32 1 4.3247 3.0172 -5.7540 33 1 2.8272 2.7107 -7.6845 34 1 1.2468 0.8230 -7.7293 35 1 1.1650 -0.7591 -5.8442 36 1 2.0543 -0.7411 3.2087 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001573559493.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:50 Heat of formation + Delta-G solvation = -131.399525 kcal Electronic energy + Delta-G solvation = -21464.032600 eV Core-core repulsion = 18104.883252 eV Total energy + Delta-G solvation = -3359.149347 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.68789 -40.68043 -39.33467 -37.25756 -36.03908 -35.53553 -32.95635 -31.70961 -31.51519 -28.96108 -26.32738 -25.63158 -23.24172 -23.02633 -21.73820 -21.08150 -19.15601 -18.76615 -18.41162 -17.56056 -17.17856 -16.89779 -16.54316 -16.12381 -15.88217 -15.49912 -15.22743 -14.66680 -14.43251 -14.12479 -13.98514 -13.74451 -13.40680 -13.35716 -13.19925 -12.85798 -12.78294 -12.69034 -12.59798 -12.21456 -11.94592 -11.67162 -11.60449 -11.28302 -10.70335 -10.52105 -10.13268 -9.53666 -9.25093 -8.23306 -6.34132 0.77814 0.81293 1.05291 1.40169 1.42441 1.50066 1.65230 1.94283 2.40239 2.52036 3.06572 3.27577 3.95474 3.96414 4.16470 4.24249 4.32238 4.39554 4.48957 4.55966 4.72014 4.79988 4.88969 4.98812 5.10440 5.17283 5.37779 5.44536 5.47174 5.52790 5.63506 5.80697 5.84146 5.93683 6.23858 6.41167 6.59460 6.72116 6.89826 7.32411 7.42081 8.84636 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.013283 B = 0.007143 C = 0.005162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2107.490801 B = 3918.811334 C = 5422.843172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.145 3.855 3 H 0.118 0.882 4 N -0.714 5.714 5 C 0.536 3.464 6 O -0.580 6.580 7 C 0.054 3.946 8 H 0.069 0.931 9 C -0.517 4.517 10 H 0.050 0.950 11 C 0.035 3.965 12 N -0.902 5.902 13 Si 0.951 3.049 14 H -0.272 1.272 15 H -0.282 1.282 16 H -0.273 1.273 17 C -0.037 4.037 18 C -0.111 4.111 19 C -0.134 4.134 20 C -0.142 4.142 21 C -0.129 4.129 22 C -0.140 4.140 23 C 0.489 3.511 24 O -0.538 6.538 25 O -0.496 6.496 26 H 0.063 0.937 27 H 0.067 0.933 28 H 0.104 0.896 29 H 0.411 0.589 30 H 0.267 0.733 31 H 0.094 0.906 32 H 0.135 0.865 33 H 0.147 0.853 34 H 0.140 0.860 35 H 0.107 0.893 36 H 0.432 0.568 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.183 5.370 7.133 10.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.039 3.961 3 H 0.136 0.864 4 N -0.368 5.368 5 C 0.326 3.674 6 O -0.460 6.460 7 C 0.033 3.967 8 H 0.087 0.913 9 C -0.555 4.555 10 H 0.068 0.932 11 C -0.167 4.167 12 N -0.539 5.539 13 Si 0.777 3.223 14 H -0.198 1.198 15 H -0.207 1.207 16 H -0.198 1.198 17 C -0.038 4.038 18 C -0.130 4.130 19 C -0.152 4.152 20 C -0.160 4.160 21 C -0.147 4.147 22 C -0.158 4.158 23 C 0.331 3.669 24 O -0.428 6.428 25 O -0.310 6.310 26 H 0.082 0.918 27 H 0.086 0.914 28 H 0.122 0.878 29 H 0.248 0.752 30 H 0.077 0.923 31 H 0.112 0.888 32 H 0.153 0.847 33 H 0.165 0.835 34 H 0.158 0.842 35 H 0.126 0.874 36 H 0.295 0.705 Dipole moment (debyes) X Y Z Total from point charges -5.372 5.974 6.661 10.436 hybrid contribution 1.397 -1.576 0.713 2.224 sum -3.975 4.397 7.375 9.462 Atomic orbital electron populations 1.22070 0.90250 1.03638 1.04580 1.20424 0.97473 0.97425 0.80747 0.86412 1.45807 1.67891 1.15020 1.08062 1.21384 0.74216 0.86469 0.85370 1.90558 1.52164 1.17202 1.86093 1.17989 0.98193 0.93355 0.87201 0.91343 1.20731 0.97686 1.05549 1.31529 0.93164 1.25556 1.00227 0.96961 0.93998 1.70002 1.38135 1.17063 1.28672 0.85650 0.80186 0.78523 0.77932 1.19780 1.20735 1.19822 1.20062 0.93735 0.93856 0.96180 1.20849 0.98459 0.95294 0.98356 1.21313 1.00255 0.99519 0.94149 1.21273 0.96866 0.98949 0.98934 1.21303 0.99872 0.95203 0.98286 1.21126 0.99807 0.99725 0.95134 1.23278 0.76146 0.81742 0.85712 1.90765 1.36903 1.27597 1.87550 1.84447 1.71654 1.58773 1.16099 0.91765 0.91401 0.87762 0.75195 0.92337 0.88757 0.84684 0.83539 0.84216 0.87445 0.70493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.54 9.42 71.98 0.68 -2.87 16 2 C 0.15 4.35 3.09 44.24 0.14 4.48 16 3 H 0.12 3.61 7.58 -2.39 -0.02 3.59 16 4 N -0.71 -27.42 4.85 -446.09 -2.16 -29.58 16 5 C 0.54 24.13 7.01 87.66 0.61 24.75 16 6 O -0.58 -27.46 15.08 -3.04 -0.05 -27.50 16 7 C 0.05 2.66 2.38 -13.03 -0.03 2.63 16 8 H 0.07 3.62 7.12 -2.39 -0.02 3.60 16 9 C -0.52 -27.18 7.47 25.60 0.19 -26.99 16 10 H 0.05 2.70 7.82 -2.91 -0.02 2.68 16 11 C 0.03 1.84 5.45 84.65 0.46 2.30 16 12 N -0.90 -49.25 12.84 21.45 0.28 -48.98 16 13 Si 0.95 42.73 29.54 68.60 2.03 44.76 16 14 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 15 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 16 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 17 C -0.04 -1.79 4.30 -19.86 -0.09 -1.88 16 18 C -0.11 -5.06 8.31 22.27 0.18 -4.88 16 19 C -0.13 -5.07 10.05 22.27 0.22 -4.84 16 20 C -0.14 -4.84 10.05 22.27 0.22 -4.62 16 21 C -0.13 -4.69 10.05 22.27 0.22 -4.47 16 22 C -0.14 -6.13 9.67 22.27 0.22 -5.91 16 23 C 0.49 13.23 7.69 71.24 0.55 13.78 16 24 O -0.54 -18.55 16.60 21.98 0.36 -18.19 16 25 O -0.50 -8.83 13.33 -51.44 -0.69 -9.51 16 26 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 27 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 28 H 0.10 1.88 8.11 -2.39 -0.02 1.86 16 29 H 0.41 16.50 7.68 -92.71 -0.71 15.79 16 30 H 0.27 13.93 8.31 -92.71 -0.77 13.16 16 31 H 0.09 4.46 7.90 -2.91 -0.02 4.43 16 32 H 0.14 4.19 8.06 -2.91 -0.02 4.16 16 33 H 0.15 3.76 8.06 -2.91 -0.02 3.73 16 34 H 0.14 4.08 8.06 -2.91 -0.02 4.05 16 35 H 0.11 4.65 7.96 -2.91 -0.02 4.63 16 36 H 0.43 3.74 9.10 -74.05 -0.67 3.07 16 Total: -1.00 -67.10 320.50 3.09 -64.01 By element: Atomic # 1 Polarization: 33.79 SS G_CDS: -0.27 Total: 33.52 kcal Atomic # 6 Polarization: -12.11 SS G_CDS: 3.58 Total: -8.52 kcal Atomic # 7 Polarization: -76.67 SS G_CDS: -1.89 Total: -78.56 kcal Atomic # 8 Polarization: -54.84 SS G_CDS: -0.37 Total: -55.20 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 2.03 Total: 44.76 kcal Total: -67.10 3.09 -64.01 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001573559493.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.388 kcal (2) G-P(sol) polarization free energy of solvation -67.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds