Wall clock time and date at job start Mon Mar 30 2020 01:43:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.47181 * 2 1 4 4 N 1.46509 * 109.46723 * 119.99684 * 2 1 3 5 5 C 1.34775 * 119.99846 * 274.99954 * 4 2 1 6 6 O 1.21282 * 120.00180 * 359.97438 * 5 4 2 7 7 C 1.50700 * 120.00269 * 180.02562 * 5 4 2 8 8 H 1.09003 * 109.46674 * 321.82565 * 7 5 4 9 9 C 1.50701 * 109.46909 * 81.81936 * 7 5 4 10 10 H 1.08002 * 119.99764 * 54.38856 * 9 7 5 11 11 C 1.37878 * 120.00257 * 234.38790 * 9 7 5 12 12 N 1.31513 * 119.99841 * 172.38415 * 11 9 7 13 13 Si 1.86797 * 119.99954 * 352.37453 * 11 9 7 14 14 H 1.48501 * 109.47206 * 83.60167 * 13 11 9 15 15 H 1.48501 * 109.47403 * 203.60107 * 13 11 9 16 16 H 1.48502 * 109.47168 * 323.60624 * 13 11 9 17 17 C 1.50690 * 109.47538 * 201.82363 * 7 5 4 18 18 C 1.38232 * 119.99975 * 292.61855 * 17 7 5 19 19 C 1.38241 * 119.99676 * 179.78860 * 18 17 7 20 20 C 1.38225 * 120.00295 * 0.43803 * 19 18 17 21 21 C 1.38237 * 120.00126 * 359.81145 * 20 19 18 22 22 C 1.38237 * 120.00016 * 112.88594 * 17 7 5 23 23 C 1.50699 * 109.47196 * 239.99527 * 2 1 3 24 24 O 1.20831 * 119.99771 * 240.00501 * 23 2 1 25 25 O 1.34229 * 120.00043 * 60.00121 * 23 2 1 26 26 H 1.09001 * 109.47181 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46958 * 60.00125 * 1 2 3 28 28 H 1.09001 * 109.47442 * 300.00354 * 1 2 3 29 29 H 0.96991 * 119.99600 * 94.99857 * 4 2 1 30 30 H 0.97003 * 119.99807 * 180.02562 * 12 11 9 31 31 H 1.07992 * 120.00225 * 359.97438 * 18 17 7 32 32 H 1.08007 * 119.99799 * 180.27513 * 19 18 17 33 33 H 1.08002 * 120.00228 * 179.83396 * 20 19 18 34 34 H 1.08001 * 120.00090 * 179.97438 * 21 20 19 35 35 H 1.08007 * 119.99900 * 359.97438 * 22 17 7 36 36 H 0.96696 * 116.99793 * 179.97438 * 25 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6906 1.1963 5 6 2.1470 -0.0182 2.3572 6 8 1.8590 1.1587 2.4115 7 6 2.6497 -0.7283 3.5877 8 1 2.2410 -1.7384 3.6166 9 6 4.1547 -0.7964 3.5486 10 1 4.7331 0.1074 3.4253 11 6 4.7932 -2.0123 3.6702 12 7 6.0930 -2.0936 3.4871 13 14 3.8122 -3.5440 4.0954 14 1 3.2152 -4.1087 2.8585 15 1 4.7104 -4.5508 4.7158 16 1 2.7310 -3.1902 5.0499 17 6 2.2127 0.0259 4.8168 18 6 2.7316 1.2800 5.0792 19 6 2.3274 1.9737 6.2045 20 6 1.4111 1.4096 7.0722 21 6 0.8960 0.1533 6.8126 22 6 1.2970 -0.5386 5.6850 23 6 2.0324 -0.7105 -1.2304 24 8 2.7270 -1.6930 -1.1194 25 8 1.7081 -0.2520 -2.4496 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 0.5139 0.8899 29 1 2.2489 -1.6317 1.1528 30 1 6.5422 -2.9492 3.5723 31 1 3.4506 1.7191 4.4034 32 1 2.7295 2.9555 6.4071 33 1 1.0973 1.9505 7.9528 34 1 0.1804 -0.2876 7.4908 35 1 0.8945 -1.5201 5.4821 36 1 2.0542 -0.7408 -3.2087 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001573559494.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:52 Heat of formation + Delta-G solvation = -107.997305 kcal Electronic energy + Delta-G solvation = -21520.572788 eV Core-core repulsion = 18162.438238 eV Total energy + Delta-G solvation = -3358.134551 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.48652 -39.26656 -37.95399 -36.19877 -34.69953 -33.64040 -31.60044 -30.46181 -30.14333 -27.68084 -25.11973 -23.63965 -21.89939 -21.74970 -20.42883 -19.58787 -17.96568 -17.30765 -17.08404 -16.22537 -15.89971 -15.56880 -15.14444 -14.64734 -14.34347 -13.89437 -13.77675 -13.35391 -13.08155 -12.82121 -12.63208 -12.48461 -12.27376 -12.05124 -11.78915 -11.66311 -11.48970 -11.16440 -11.03743 -10.50158 -10.43816 -10.17031 -10.02106 -9.55790 -9.12395 -8.71361 -8.70440 -8.15018 -7.84902 -6.31314 -4.33932 2.11906 2.17956 2.19390 2.79110 3.13887 3.24001 3.24738 3.53413 3.80709 4.20911 4.60444 5.00260 5.05164 5.08841 5.25650 5.52649 5.56399 5.62535 5.70826 5.77667 5.95343 6.07980 6.15074 6.16045 6.33073 6.39346 6.42742 6.71570 6.82946 6.87516 7.15346 7.24222 7.27028 7.57861 7.77558 7.83359 8.06390 8.26404 8.71436 8.98120 9.26112 10.79982 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.014388 B = 0.007157 C = 0.005464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1945.651188 B = 3911.073014 C = 5123.459507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.155 3.845 3 H 0.123 0.877 4 N -0.722 5.722 5 C 0.538 3.462 6 O -0.555 6.555 7 C 0.037 3.963 8 H 0.061 0.939 9 C -0.509 4.509 10 H 0.084 0.916 11 C 0.084 3.916 12 N -0.877 5.877 13 Si 0.865 3.135 14 H -0.269 1.269 15 H -0.283 1.283 16 H -0.259 1.259 17 C -0.033 4.033 18 C -0.069 4.069 19 C -0.131 4.131 20 C -0.141 4.141 21 C -0.131 4.131 22 C -0.133 4.133 23 C 0.474 3.526 24 O -0.501 6.501 25 O -0.514 6.514 26 H 0.060 0.940 27 H 0.075 0.925 28 H 0.079 0.921 29 H 0.409 0.591 30 H 0.270 0.730 31 H 0.121 0.879 32 H 0.111 0.889 33 H 0.109 0.891 34 H 0.109 0.891 35 H 0.110 0.890 36 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.082 2.074 -4.583 12.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.048 3.952 3 H 0.141 0.859 4 N -0.378 5.378 5 C 0.328 3.672 6 O -0.433 6.433 7 C 0.015 3.985 8 H 0.079 0.921 9 C -0.546 4.546 10 H 0.102 0.898 11 C -0.121 4.121 12 N -0.512 5.512 13 Si 0.691 3.309 14 H -0.195 1.195 15 H -0.208 1.208 16 H -0.184 1.184 17 C -0.034 4.034 18 C -0.087 4.087 19 C -0.149 4.149 20 C -0.160 4.160 21 C -0.149 4.149 22 C -0.151 4.151 23 C 0.315 3.685 24 O -0.388 6.388 25 O -0.326 6.326 26 H 0.079 0.921 27 H 0.094 0.906 28 H 0.098 0.902 29 H 0.245 0.755 30 H 0.080 0.920 31 H 0.139 0.861 32 H 0.129 0.871 33 H 0.127 0.873 34 H 0.128 0.872 35 H 0.128 0.872 36 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges -11.048 2.727 -4.180 12.123 hybrid contribution 0.197 -1.768 -0.374 1.818 sum -10.851 0.959 -4.554 11.807 Atomic orbital electron populations 1.22128 0.92419 1.02921 1.03976 1.20209 0.95691 0.98142 0.81190 0.85899 1.45939 1.69092 1.14884 1.07893 1.21629 0.73509 0.87363 0.84667 1.90578 1.50655 1.16443 1.85582 1.18297 0.98781 0.94779 0.86648 0.92126 1.20508 0.86026 0.95921 1.52136 0.89773 1.25048 0.94959 0.98550 0.93586 1.69862 1.08694 1.26266 1.46382 0.87006 0.80857 0.83148 0.79853 1.19463 1.20847 1.18365 1.19969 0.92945 0.94118 0.96318 1.20927 0.97990 0.94030 0.95748 1.21055 0.98676 0.99655 0.95542 1.20883 0.99325 0.96102 0.99642 1.20882 1.00902 0.95446 0.97671 1.21007 0.98607 0.99687 0.95783 1.23665 0.77105 0.82739 0.84998 1.90772 1.35049 1.26040 1.86924 1.84507 1.72293 1.59127 1.16629 0.92096 0.90646 0.90225 0.75459 0.91993 0.86105 0.87080 0.87332 0.87248 0.87205 0.73161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.91 9.42 37.16 0.35 -1.56 16 2 C 0.15 2.35 3.09 -69.08 -0.21 2.14 16 3 H 0.12 1.92 7.58 -51.93 -0.39 1.53 16 4 N -0.72 -13.48 4.95 -54.92 -0.27 -13.75 16 5 C 0.54 11.56 6.90 -10.99 -0.08 11.49 16 6 O -0.56 -12.62 14.86 5.56 0.08 -12.53 16 7 C 0.04 0.84 2.20 -94.08 -0.21 0.63 16 8 H 0.06 1.32 4.73 -51.93 -0.25 1.08 16 9 C -0.51 -13.47 8.24 -34.44 -0.28 -13.75 16 10 H 0.08 2.47 7.72 -52.49 -0.40 2.07 16 11 C 0.08 2.27 5.47 -17.82 -0.10 2.17 16 12 N -0.88 -25.36 13.96 55.43 0.77 -24.59 16 13 Si 0.87 19.87 26.84 -169.99 -4.56 15.31 16 14 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 15 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 16 H -0.26 -5.67 6.96 56.52 0.39 -5.28 16 17 C -0.03 -0.71 4.52 -104.63 -0.47 -1.19 16 18 C -0.07 -1.47 8.04 -39.58 -0.32 -1.79 16 19 C -0.13 -2.40 10.05 -39.58 -0.40 -2.80 16 20 C -0.14 -2.38 10.05 -39.59 -0.40 -2.78 16 21 C -0.13 -2.26 10.05 -39.58 -0.40 -2.65 16 22 C -0.13 -2.60 9.67 -39.58 -0.38 -2.98 16 23 C 0.47 6.82 7.69 36.01 0.28 7.09 16 24 O -0.50 -8.95 16.60 -18.75 -0.31 -9.26 16 25 O -0.51 -5.35 13.33 -39.25 -0.52 -5.87 16 26 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 27 H 0.07 0.76 8.11 -51.93 -0.42 0.34 16 28 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 29 H 0.41 7.74 7.79 -40.82 -0.32 7.42 16 30 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 31 H 0.12 2.72 7.46 -52.49 -0.39 2.33 16 32 H 0.11 1.74 8.06 -52.48 -0.42 1.32 16 33 H 0.11 1.49 8.06 -52.49 -0.42 1.06 16 34 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 35 H 0.11 1.98 7.96 -52.48 -0.42 1.56 16 36 H 0.41 2.48 9.10 45.56 0.41 2.90 16 LS Contribution 316.31 15.07 4.77 4.77 Total: -1.00 -32.13 316.31 -6.10 -38.23 By element: Atomic # 1 Polarization: 17.12 SS G_CDS: -3.44 Total: 13.69 kcal Atomic # 6 Polarization: -3.36 SS G_CDS: -2.62 Total: -5.98 kcal Atomic # 7 Polarization: -38.84 SS G_CDS: 0.50 Total: -38.34 kcal Atomic # 8 Polarization: -26.92 SS G_CDS: -0.75 Total: -27.67 kcal Atomic # 14 Polarization: 19.87 SS G_CDS: -4.56 Total: 15.31 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -32.13 -6.10 -38.23 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001573559494.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.768 kcal (2) G-P(sol) polarization free energy of solvation -32.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds