Wall clock time and date at job start Mon Mar 30 2020 01:43:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.47181 * 2 1 4 4 N 1.46509 * 109.46723 * 119.99684 * 2 1 3 5 5 C 1.34775 * 119.99846 * 274.99954 * 4 2 1 6 6 O 1.21282 * 120.00180 * 359.97438 * 5 4 2 7 7 C 1.50700 * 120.00269 * 180.02562 * 5 4 2 8 8 H 1.09003 * 109.46674 * 321.82565 * 7 5 4 9 9 C 1.50701 * 109.46909 * 81.81936 * 7 5 4 10 10 H 1.08002 * 119.99764 * 54.38856 * 9 7 5 11 11 C 1.37878 * 120.00257 * 234.38790 * 9 7 5 12 12 N 1.31513 * 119.99841 * 172.38415 * 11 9 7 13 13 Si 1.86797 * 119.99954 * 352.37453 * 11 9 7 14 14 H 1.48501 * 109.47206 * 83.60167 * 13 11 9 15 15 H 1.48501 * 109.47403 * 203.60107 * 13 11 9 16 16 H 1.48502 * 109.47168 * 323.60624 * 13 11 9 17 17 C 1.50690 * 109.47538 * 201.82363 * 7 5 4 18 18 C 1.38232 * 119.99975 * 292.61855 * 17 7 5 19 19 C 1.38241 * 119.99676 * 179.78860 * 18 17 7 20 20 C 1.38225 * 120.00295 * 0.43803 * 19 18 17 21 21 C 1.38237 * 120.00126 * 359.81145 * 20 19 18 22 22 C 1.38237 * 120.00016 * 112.88594 * 17 7 5 23 23 C 1.50699 * 109.47196 * 239.99527 * 2 1 3 24 24 O 1.20831 * 119.99771 * 240.00501 * 23 2 1 25 25 O 1.34229 * 120.00043 * 60.00121 * 23 2 1 26 26 H 1.09001 * 109.47181 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46958 * 60.00125 * 1 2 3 28 28 H 1.09001 * 109.47442 * 300.00354 * 1 2 3 29 29 H 0.96991 * 119.99600 * 94.99857 * 4 2 1 30 30 H 0.97003 * 119.99807 * 180.02562 * 12 11 9 31 31 H 1.07992 * 120.00225 * 359.97438 * 18 17 7 32 32 H 1.08007 * 119.99799 * 180.27513 * 19 18 17 33 33 H 1.08002 * 120.00228 * 179.83396 * 20 19 18 34 34 H 1.08001 * 120.00090 * 179.97438 * 21 20 19 35 35 H 1.08007 * 119.99900 * 359.97438 * 22 17 7 36 36 H 0.96696 * 116.99793 * 179.97438 * 25 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6906 1.1963 5 6 2.1470 -0.0182 2.3572 6 8 1.8590 1.1587 2.4115 7 6 2.6497 -0.7283 3.5877 8 1 2.2410 -1.7384 3.6166 9 6 4.1547 -0.7964 3.5486 10 1 4.7331 0.1074 3.4253 11 6 4.7932 -2.0123 3.6702 12 7 6.0930 -2.0936 3.4871 13 14 3.8122 -3.5440 4.0954 14 1 3.2152 -4.1087 2.8585 15 1 4.7104 -4.5508 4.7158 16 1 2.7310 -3.1902 5.0499 17 6 2.2127 0.0259 4.8168 18 6 2.7316 1.2800 5.0792 19 6 2.3274 1.9737 6.2045 20 6 1.4111 1.4096 7.0722 21 6 0.8960 0.1533 6.8126 22 6 1.2970 -0.5386 5.6850 23 6 2.0324 -0.7105 -1.2304 24 8 2.7270 -1.6930 -1.1194 25 8 1.7081 -0.2520 -2.4496 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 0.5139 0.8899 29 1 2.2489 -1.6317 1.1528 30 1 6.5422 -2.9492 3.5723 31 1 3.4506 1.7191 4.4034 32 1 2.7295 2.9555 6.4071 33 1 1.0973 1.9505 7.9528 34 1 0.1804 -0.2876 7.4908 35 1 0.8945 -1.5201 5.4821 36 1 2.0542 -0.7408 -3.2087 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001573559494.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:51 Heat of formation + Delta-G solvation = -131.077185 kcal Electronic energy + Delta-G solvation = -21521.573607 eV Core-core repulsion = 18162.438238 eV Total energy + Delta-G solvation = -3359.135369 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.74144 -40.79035 -39.42922 -37.29351 -36.11596 -35.52388 -33.44200 -31.79399 -31.59797 -29.34614 -26.34141 -25.43195 -23.36634 -23.11961 -21.77077 -21.15543 -19.20871 -19.10054 -18.60757 -17.74605 -17.23039 -16.92427 -16.56860 -16.28620 -15.82093 -15.38197 -15.35727 -14.83489 -14.48641 -14.48029 -14.10460 -13.81721 -13.73609 -13.39917 -13.23126 -12.91925 -12.76859 -12.71171 -12.62635 -12.06672 -11.91901 -11.71458 -11.63364 -11.43754 -10.94349 -10.63825 -10.22229 -9.61360 -9.36916 -8.38855 -6.46683 0.65287 0.72458 1.02205 1.32128 1.36476 1.45529 1.57919 1.89751 2.28014 2.41819 2.97473 3.16515 3.91307 3.92678 4.08494 4.12878 4.24439 4.28631 4.40370 4.44076 4.47979 4.70427 4.77817 4.85486 4.91613 5.16487 5.20666 5.34346 5.36914 5.40804 5.48514 5.72448 5.77445 5.95355 6.17187 6.31846 6.50209 6.57284 6.86414 7.17150 7.30917 8.76542 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.014388 B = 0.007157 C = 0.005464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1945.651188 B = 3911.073014 C = 5123.459507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.145 3.855 3 H 0.116 0.884 4 N -0.719 5.719 5 C 0.537 3.463 6 O -0.573 6.573 7 C 0.037 3.963 8 H 0.072 0.928 9 C -0.507 4.507 10 H 0.032 0.968 11 C 0.029 3.971 12 N -0.931 5.931 13 Si 0.927 3.073 14 H -0.251 1.251 15 H -0.285 1.285 16 H -0.237 1.237 17 C -0.063 4.063 18 C -0.099 4.099 19 C -0.135 4.135 20 C -0.133 4.133 21 C -0.124 4.124 22 C -0.144 4.144 23 C 0.488 3.512 24 O -0.541 6.541 25 O -0.496 6.496 26 H 0.072 0.928 27 H 0.103 0.897 28 H 0.066 0.934 29 H 0.408 0.592 30 H 0.271 0.729 31 H 0.087 0.913 32 H 0.133 0.867 33 H 0.150 0.850 34 H 0.150 0.850 35 H 0.126 0.874 36 H 0.433 0.567 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.279 1.410 -3.838 14.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.039 3.961 3 H 0.133 0.867 4 N -0.373 5.373 5 C 0.327 3.673 6 O -0.452 6.452 7 C 0.016 3.984 8 H 0.090 0.910 9 C -0.544 4.544 10 H 0.051 0.949 11 C -0.172 4.172 12 N -0.568 5.568 13 Si 0.749 3.251 14 H -0.175 1.175 15 H -0.210 1.210 16 H -0.160 1.160 17 C -0.064 4.064 18 C -0.118 4.118 19 C -0.153 4.153 20 C -0.150 4.150 21 C -0.141 4.141 22 C -0.162 4.162 23 C 0.330 3.670 24 O -0.431 6.431 25 O -0.309 6.309 26 H 0.091 0.909 27 H 0.122 0.878 28 H 0.085 0.915 29 H 0.244 0.756 30 H 0.080 0.920 31 H 0.106 0.894 32 H 0.151 0.849 33 H 0.168 0.832 34 H 0.168 0.832 35 H 0.143 0.857 36 H 0.295 0.705 Dipole moment (debyes) X Y Z Total from point charges -14.280 2.084 -3.490 14.847 hybrid contribution 1.178 -1.384 -0.667 1.936 sum -13.102 0.700 -4.158 13.764 Atomic orbital electron populations 1.22068 0.89619 1.03921 1.04731 1.20457 0.97810 0.97325 0.80501 0.86678 1.45865 1.68300 1.14794 1.08387 1.21319 0.73713 0.87046 0.85259 1.90554 1.51682 1.17005 1.86001 1.18231 0.96088 0.95886 0.88231 0.91005 1.20482 0.88175 0.94096 1.51680 0.94929 1.25921 0.95853 1.02059 0.93326 1.70015 1.10837 1.27233 1.48710 0.86019 0.79824 0.78538 0.80744 1.17504 1.21049 1.16006 1.19979 0.95082 0.94710 0.96659 1.20850 0.98821 0.94972 0.97145 1.21346 0.98874 1.00439 0.94631 1.21367 0.97558 0.96084 1.00031 1.21363 1.00560 0.95232 0.96983 1.21266 0.98220 1.00601 0.96144 1.23322 0.76100 0.81747 0.85808 1.90770 1.36874 1.27817 1.87591 1.84440 1.71582 1.58779 1.16079 0.90946 0.87815 0.91477 0.75605 0.91959 0.89450 0.84938 0.83186 0.83196 0.85654 0.70470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.29 9.42 71.98 0.68 -2.61 16 2 C 0.15 4.34 3.09 44.24 0.14 4.47 16 3 H 0.12 3.64 7.58 -2.39 -0.02 3.62 16 4 N -0.72 -27.15 4.95 -446.07 -2.21 -29.36 16 5 C 0.54 23.77 6.90 87.66 0.60 24.38 16 6 O -0.57 -27.02 14.86 -3.04 -0.05 -27.07 16 7 C 0.04 1.74 2.20 -13.04 -0.03 1.71 16 8 H 0.07 3.10 4.73 -2.39 -0.01 3.09 16 9 C -0.51 -28.34 8.24 25.60 0.21 -28.13 16 10 H 0.03 2.09 7.72 -2.91 -0.02 2.07 16 11 C 0.03 1.60 5.47 84.66 0.46 2.06 16 12 N -0.93 -56.45 13.96 21.45 0.30 -56.15 16 13 Si 0.93 40.94 26.84 68.60 1.84 42.78 16 14 H -0.25 -10.29 7.11 99.48 0.71 -9.58 16 15 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 16 H -0.24 -9.53 6.96 99.48 0.69 -8.84 16 17 C -0.06 -2.80 4.52 -19.87 -0.09 -2.89 16 18 C -0.10 -4.41 8.04 22.27 0.18 -4.23 16 19 C -0.13 -4.80 10.05 22.27 0.22 -4.58 16 20 C -0.13 -3.97 10.05 22.27 0.22 -3.75 16 21 C -0.12 -3.76 10.05 22.27 0.22 -3.54 16 22 C -0.14 -5.33 9.67 22.27 0.22 -5.11 16 23 C 0.49 13.48 7.69 71.24 0.55 14.03 16 24 O -0.54 -19.09 16.60 21.95 0.36 -18.73 16 25 O -0.50 -9.08 13.33 -51.41 -0.69 -9.77 16 26 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 27 H 0.10 1.77 8.11 -2.38 -0.02 1.75 16 28 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 29 H 0.41 15.54 7.79 -92.71 -0.72 14.82 16 30 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 31 H 0.09 4.32 7.46 -2.91 -0.02 4.30 16 32 H 0.13 3.99 8.06 -2.91 -0.02 3.97 16 33 H 0.15 3.27 8.06 -2.91 -0.02 3.25 16 34 H 0.15 3.36 8.06 -2.91 -0.02 3.34 16 35 H 0.13 4.13 7.96 -2.91 -0.02 4.11 16 36 H 0.43 4.03 9.10 -74.06 -0.67 3.35 16 Total: -1.00 -74.26 316.31 2.87 -71.39 By element: Atomic # 1 Polarization: 35.38 SS G_CDS: -0.29 Total: 35.09 kcal Atomic # 6 Polarization: -11.78 SS G_CDS: 3.59 Total: -8.19 kcal Atomic # 7 Polarization: -83.60 SS G_CDS: -1.91 Total: -85.51 kcal Atomic # 8 Polarization: -55.20 SS G_CDS: -0.37 Total: -55.56 kcal Atomic # 14 Polarization: 40.94 SS G_CDS: 1.84 Total: 42.78 kcal Total: -74.26 2.87 -71.39 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001573559494.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.685 kcal (2) G-P(sol) polarization free energy of solvation -74.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds