Wall clock time and date at job start Mon Mar 30 2020 01:43:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.47200 * 2 1 4 4 N 1.46503 * 109.47410 * 239.99595 * 2 1 3 5 5 C 1.34777 * 119.99636 * 84.99773 * 4 2 1 6 6 O 1.21274 * 120.00295 * 0.02562 * 5 4 2 7 7 C 1.50702 * 119.99803 * 179.97438 * 5 4 2 8 8 H 1.09000 * 109.47491 * 300.00784 * 7 5 4 9 9 C 1.50699 * 109.47211 * 60.00540 * 7 5 4 10 10 H 1.08003 * 119.99772 * 33.92535 * 9 7 5 11 11 C 1.37873 * 120.00323 * 213.92802 * 9 7 5 12 12 N 1.31514 * 120.00187 * 6.38918 * 11 9 7 13 13 Si 1.86807 * 120.00179 * 186.38754 * 11 9 7 14 14 H 1.48494 * 109.47096 * 90.00016 * 13 11 9 15 15 H 1.48498 * 109.47138 * 210.00199 * 13 11 9 16 16 H 1.48499 * 109.46873 * 330.00035 * 13 11 9 17 17 C 1.50695 * 109.47267 * 180.02562 * 7 5 4 18 18 C 1.38237 * 119.99795 * 293.85328 * 17 7 5 19 19 C 1.38239 * 119.99802 * 179.78917 * 18 17 7 20 20 C 1.38231 * 119.99813 * 0.43592 * 19 18 17 21 21 C 1.38235 * 120.00257 * 359.81312 * 20 19 18 22 22 C 1.38230 * 120.00060 * 114.12143 * 17 7 5 23 23 C 1.50705 * 109.46785 * 120.00054 * 2 1 3 24 24 O 1.20826 * 120.00219 * 120.00149 * 23 2 1 25 25 O 1.34228 * 119.99760 * 299.99845 * 23 2 1 26 26 H 1.09005 * 109.46775 * 60.00453 * 1 2 3 27 27 H 1.08999 * 109.47200 * 179.97438 * 1 2 3 28 28 H 1.08992 * 109.47241 * 300.00406 * 1 2 3 29 29 H 0.96999 * 119.99993 * 265.00395 * 4 2 1 30 30 H 0.96998 * 120.00169 * 179.97438 * 12 11 9 31 31 H 1.07998 * 120.00091 * 359.97438 * 18 17 7 32 32 H 1.08002 * 119.99897 * 180.27059 * 19 18 17 33 33 H 1.08004 * 120.00022 * 179.83568 * 20 19 18 34 34 H 1.08008 * 120.00036 * 180.02562 * 21 20 19 35 35 H 1.07997 * 119.99980 * 359.97438 * 22 17 7 36 36 H 0.96700 * 117.00284 * 180.02562 * 25 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6907 -1.1961 5 6 2.1471 -0.0184 -2.3571 6 8 1.8591 1.1584 -2.4115 7 6 2.6501 -0.7287 -3.5874 8 1 3.6494 -1.1205 -3.3978 9 6 1.7208 -1.8656 -3.9262 10 1 0.6615 -1.7717 -3.7377 11 6 2.2227 -3.0256 -4.4769 12 7 3.5225 -3.1908 -4.5906 13 14 1.0567 -4.3628 -5.0616 14 1 0.7112 -4.1299 -6.4869 15 1 1.7127 -5.6877 -4.9214 16 1 -0.1808 -4.3339 -4.2412 17 6 2.7012 0.2397 -4.7409 18 6 1.5309 0.7713 -5.2494 19 6 1.5781 1.6630 -6.3047 20 6 2.7950 2.0160 -6.8573 21 6 3.9649 1.4804 -6.3522 22 6 3.9180 0.5920 -5.2941 23 6 2.0323 -0.7105 1.2305 24 8 2.7269 -1.6928 1.1197 25 8 1.7080 -0.2518 2.4496 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 2.2491 -1.6318 -1.1525 30 1 3.8757 -4.0071 -4.9777 31 1 0.5799 0.4924 -4.8203 32 1 0.6640 2.0817 -6.6992 33 1 2.8317 2.7106 -7.6836 34 1 4.9158 1.7565 -6.7837 35 1 4.8321 0.1736 -4.8994 36 1 2.0539 -0.7405 3.2089 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001573559496.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:55 Heat of formation + Delta-G solvation = -111.688360 kcal Electronic energy + Delta-G solvation = -21450.705848 eV Core-core repulsion = 18092.411241 eV Total energy + Delta-G solvation = -3358.294607 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.46458 -39.10616 -37.78677 -36.19641 -34.59479 -33.66958 -31.17349 -30.31504 -29.95250 -27.25936 -25.01824 -23.89812 -21.75565 -21.55174 -20.35160 -19.48836 -17.97226 -17.26497 -16.62372 -16.10425 -15.75152 -15.47404 -15.09918 -14.48043 -14.15155 -14.02001 -13.68408 -13.32649 -13.00250 -12.56193 -12.36829 -12.33214 -12.14550 -11.70278 -11.60655 -11.57958 -11.37571 -11.05984 -11.02438 -10.43926 -10.38833 -10.28691 -10.01817 -9.46360 -8.84348 -8.64980 -8.57331 -7.96314 -7.64107 -6.27921 -4.33544 2.17375 2.35299 2.37900 2.83279 3.21421 3.28391 3.29508 3.60355 3.97113 4.28577 4.80420 5.07031 5.09681 5.17047 5.27971 5.70901 5.71314 5.78344 5.86653 5.90205 6.18194 6.26855 6.28836 6.42277 6.48076 6.57917 6.85502 6.95344 7.00049 7.18197 7.35580 7.42614 7.61972 7.74703 7.83269 7.93459 8.04954 8.27461 8.69796 9.11887 9.32284 10.80815 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.013426 B = 0.006843 C = 0.005209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2084.965535 B = 4090.674421 C = 5374.221661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.154 3.846 3 H 0.120 0.880 4 N -0.718 5.718 5 C 0.535 3.465 6 O -0.565 6.565 7 C 0.051 3.949 8 H 0.094 0.906 9 C -0.517 4.517 10 H 0.063 0.937 11 C 0.076 3.924 12 N -0.877 5.877 13 Si 0.898 3.102 14 H -0.277 1.277 15 H -0.285 1.285 16 H -0.272 1.272 17 C -0.013 4.013 18 C -0.084 4.084 19 C -0.134 4.134 20 C -0.148 4.148 21 C -0.132 4.132 22 C -0.119 4.119 23 C 0.475 3.525 24 O -0.504 6.504 25 O -0.514 6.514 26 H 0.079 0.921 27 H 0.062 0.938 28 H 0.072 0.928 29 H 0.416 0.584 30 H 0.268 0.732 31 H 0.112 0.888 32 H 0.106 0.894 33 H 0.105 0.895 34 H 0.107 0.893 35 H 0.112 0.888 36 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.833 5.065 7.124 9.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.047 3.953 3 H 0.138 0.862 4 N -0.374 5.374 5 C 0.326 3.674 6 O -0.443 6.443 7 C 0.030 3.970 8 H 0.112 0.888 9 C -0.554 4.554 10 H 0.082 0.918 11 C -0.130 4.130 12 N -0.513 5.513 13 Si 0.725 3.275 14 H -0.203 1.203 15 H -0.210 1.210 16 H -0.196 1.196 17 C -0.014 4.014 18 C -0.102 4.102 19 C -0.152 4.152 20 C -0.166 4.166 21 C -0.150 4.150 22 C -0.138 4.138 23 C 0.316 3.684 24 O -0.391 6.391 25 O -0.325 6.325 26 H 0.098 0.902 27 H 0.081 0.919 28 H 0.090 0.910 29 H 0.254 0.746 30 H 0.077 0.923 31 H 0.130 0.870 32 H 0.124 0.876 33 H 0.123 0.877 34 H 0.125 0.875 35 H 0.131 0.869 36 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges -2.835 5.696 6.658 9.209 hybrid contribution -0.167 -1.656 0.124 1.669 sum -3.003 4.040 6.782 8.446 Atomic orbital electron populations 1.22118 0.92415 1.03160 1.03741 1.20197 0.95978 0.97759 0.81362 0.86232 1.45897 1.68810 1.15275 1.07397 1.21730 0.75020 0.86268 0.84420 1.90585 1.51576 1.16801 1.85366 1.18123 1.01207 0.92134 0.85560 0.88785 1.20654 0.93393 0.97462 1.43933 0.91850 1.24959 0.95215 0.98129 0.94665 1.69874 1.11249 1.27347 1.42794 0.86482 0.80862 0.80607 0.79508 1.20312 1.21036 1.19625 1.20045 0.92068 0.92611 0.96659 1.20830 0.98372 0.95697 0.95346 1.20958 0.96961 0.99500 0.97825 1.20806 0.93048 1.01891 1.00881 1.20906 0.97342 0.98873 0.97845 1.21007 0.97711 0.97843 0.97208 1.23722 0.76988 0.82666 0.84988 1.90751 1.35414 1.25971 1.86969 1.84518 1.72336 1.59048 1.16646 0.90198 0.91870 0.90957 0.74608 0.92255 0.87034 0.87561 0.87697 0.87530 0.86945 0.73228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.08 9.42 37.16 0.35 -1.74 16 2 C 0.15 2.36 3.09 -69.08 -0.21 2.14 16 3 H 0.12 1.83 7.58 -51.93 -0.39 1.43 16 4 N -0.72 -13.55 4.85 -54.93 -0.27 -13.81 16 5 C 0.54 11.67 7.01 -10.98 -0.08 11.59 16 6 O -0.56 -13.04 15.08 5.56 0.08 -12.96 16 7 C 0.05 1.20 2.44 -94.08 -0.23 0.97 16 8 H 0.09 2.39 7.00 -51.93 -0.36 2.03 16 9 C -0.52 -12.88 7.46 -34.44 -0.26 -13.13 16 10 H 0.06 1.58 7.82 -52.48 -0.41 1.17 16 11 C 0.08 1.93 5.45 -17.82 -0.10 1.83 16 12 N -0.88 -23.31 12.78 55.43 0.71 -22.60 16 13 Si 0.90 20.13 29.54 -169.99 -5.02 15.11 16 14 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 15 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 16 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 17 C -0.01 -0.30 4.30 -104.63 -0.45 -0.75 16 18 C -0.08 -1.86 8.31 -39.58 -0.33 -2.19 16 19 C -0.13 -2.61 10.05 -39.58 -0.40 -3.00 16 20 C -0.15 -2.72 10.05 -39.58 -0.40 -3.12 16 21 C -0.13 -2.52 10.05 -39.58 -0.40 -2.91 16 22 C -0.12 -2.59 9.67 -39.58 -0.38 -2.98 16 23 C 0.48 6.66 7.69 36.01 0.28 6.93 16 24 O -0.50 -8.63 16.60 -18.75 -0.31 -8.94 16 25 O -0.51 -5.21 13.33 -39.25 -0.52 -5.73 16 26 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 27 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.07 0.78 8.11 -51.93 -0.42 0.36 16 29 H 0.42 8.18 7.68 -40.82 -0.31 7.86 16 30 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 31 H 0.11 2.46 7.89 -52.49 -0.41 2.05 16 32 H 0.11 1.75 8.06 -52.49 -0.42 1.33 16 33 H 0.10 1.59 8.06 -52.48 -0.42 1.17 16 34 H 0.11 1.72 8.06 -52.48 -0.42 1.30 16 35 H 0.11 2.36 7.95 -52.49 -0.42 1.95 16 36 H 0.41 2.32 9.10 45.56 0.41 2.74 16 LS Contribution 320.39 15.07 4.83 4.83 Total: -1.00 -30.14 320.39 -6.67 -36.82 By element: Atomic # 1 Polarization: 17.20 SS G_CDS: -3.57 Total: 13.63 kcal Atomic # 6 Polarization: -3.74 SS G_CDS: -2.60 Total: -6.34 kcal Atomic # 7 Polarization: -36.86 SS G_CDS: 0.44 Total: -36.41 kcal Atomic # 8 Polarization: -26.88 SS G_CDS: -0.75 Total: -27.63 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -5.02 Total: 15.11 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -30.14 -6.67 -36.82 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001573559496.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.872 kcal (2) G-P(sol) polarization free energy of solvation -30.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds