Wall clock time and date at job start Mon Mar 30 2020 01:43:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.47200 * 2 1 4 4 N 1.46503 * 109.47410 * 239.99595 * 2 1 3 5 5 C 1.34777 * 119.99636 * 84.99773 * 4 2 1 6 6 O 1.21274 * 120.00295 * 0.02562 * 5 4 2 7 7 C 1.50702 * 119.99803 * 179.97438 * 5 4 2 8 8 H 1.09000 * 109.47491 * 300.00784 * 7 5 4 9 9 C 1.50699 * 109.47211 * 60.00540 * 7 5 4 10 10 H 1.08003 * 119.99772 * 33.92535 * 9 7 5 11 11 C 1.37873 * 120.00323 * 213.92802 * 9 7 5 12 12 N 1.31514 * 120.00187 * 6.38918 * 11 9 7 13 13 Si 1.86807 * 120.00179 * 186.38754 * 11 9 7 14 14 H 1.48494 * 109.47096 * 90.00016 * 13 11 9 15 15 H 1.48498 * 109.47138 * 210.00199 * 13 11 9 16 16 H 1.48499 * 109.46873 * 330.00035 * 13 11 9 17 17 C 1.50695 * 109.47267 * 180.02562 * 7 5 4 18 18 C 1.38237 * 119.99795 * 293.85328 * 17 7 5 19 19 C 1.38239 * 119.99802 * 179.78917 * 18 17 7 20 20 C 1.38231 * 119.99813 * 0.43592 * 19 18 17 21 21 C 1.38235 * 120.00257 * 359.81312 * 20 19 18 22 22 C 1.38230 * 120.00060 * 114.12143 * 17 7 5 23 23 C 1.50705 * 109.46785 * 120.00054 * 2 1 3 24 24 O 1.20826 * 120.00219 * 120.00149 * 23 2 1 25 25 O 1.34228 * 119.99760 * 299.99845 * 23 2 1 26 26 H 1.09005 * 109.46775 * 60.00453 * 1 2 3 27 27 H 1.08999 * 109.47200 * 179.97438 * 1 2 3 28 28 H 1.08992 * 109.47241 * 300.00406 * 1 2 3 29 29 H 0.96999 * 119.99993 * 265.00395 * 4 2 1 30 30 H 0.96998 * 120.00169 * 179.97438 * 12 11 9 31 31 H 1.07998 * 120.00091 * 359.97438 * 18 17 7 32 32 H 1.08002 * 119.99897 * 180.27059 * 19 18 17 33 33 H 1.08004 * 120.00022 * 179.83568 * 20 19 18 34 34 H 1.08008 * 120.00036 * 180.02562 * 21 20 19 35 35 H 1.07997 * 119.99980 * 359.97438 * 22 17 7 36 36 H 0.96700 * 117.00284 * 180.02562 * 25 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6907 -1.1961 5 6 2.1471 -0.0184 -2.3571 6 8 1.8591 1.1584 -2.4115 7 6 2.6501 -0.7287 -3.5874 8 1 3.6494 -1.1205 -3.3978 9 6 1.7208 -1.8656 -3.9262 10 1 0.6615 -1.7717 -3.7377 11 6 2.2227 -3.0256 -4.4769 12 7 3.5225 -3.1908 -4.5906 13 14 1.0567 -4.3628 -5.0616 14 1 0.7112 -4.1299 -6.4869 15 1 1.7127 -5.6877 -4.9214 16 1 -0.1808 -4.3339 -4.2412 17 6 2.7012 0.2397 -4.7409 18 6 1.5309 0.7713 -5.2494 19 6 1.5781 1.6630 -6.3047 20 6 2.7950 2.0160 -6.8573 21 6 3.9649 1.4804 -6.3522 22 6 3.9180 0.5920 -5.2941 23 6 2.0323 -0.7105 1.2305 24 8 2.7269 -1.6928 1.1197 25 8 1.7080 -0.2518 2.4496 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 2.2491 -1.6318 -1.1525 30 1 3.8757 -4.0071 -4.9777 31 1 0.5799 0.4924 -4.8203 32 1 0.6640 2.0817 -6.6992 33 1 2.8317 2.7106 -7.6836 34 1 4.9158 1.7565 -6.7837 35 1 4.8321 0.1736 -4.8994 36 1 2.0539 -0.7405 3.2089 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001573559496.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:55 Heat of formation + Delta-G solvation = -131.399024 kcal Electronic energy + Delta-G solvation = -21451.560566 eV Core-core repulsion = 18092.411241 eV Total energy + Delta-G solvation = -3359.149325 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.69117 -40.68374 -39.34371 -37.26275 -36.03394 -35.52723 -32.95664 -31.71088 -31.52751 -28.96616 -26.28555 -25.66531 -23.25183 -23.03049 -21.74274 -21.07960 -19.16004 -18.77459 -18.35288 -17.64864 -17.15362 -16.88441 -16.51297 -16.15831 -15.78830 -15.58204 -15.20361 -14.69097 -14.46145 -14.07450 -14.01060 -13.75496 -13.40194 -13.31637 -13.19391 -12.88305 -12.76591 -12.69516 -12.60275 -12.19179 -11.95153 -11.66417 -11.60888 -11.27981 -10.72743 -10.49037 -10.12558 -9.55060 -9.26976 -8.22406 -6.32737 0.76065 0.79993 1.04284 1.42069 1.43887 1.52377 1.68355 1.88903 2.42003 2.53639 3.07545 3.26936 3.96082 3.96520 4.14814 4.23698 4.31389 4.39140 4.48916 4.54955 4.71775 4.79917 4.88863 4.97610 5.12456 5.18449 5.36512 5.44276 5.47095 5.52861 5.64185 5.79578 5.83389 5.93889 6.23027 6.40165 6.59712 6.74267 6.89476 7.33466 7.42584 8.86164 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.013426 B = 0.006843 C = 0.005209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2084.965535 B = 4090.674421 C = 5374.221661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.146 3.854 3 H 0.122 0.878 4 N -0.714 5.714 5 C 0.537 3.463 6 O -0.580 6.580 7 C 0.050 3.950 8 H 0.066 0.934 9 C -0.516 4.516 10 H 0.058 0.942 11 C 0.032 3.968 12 N -0.907 5.907 13 Si 0.954 3.046 14 H -0.279 1.279 15 H -0.282 1.282 16 H -0.264 1.264 17 C -0.041 4.041 18 C -0.108 4.108 19 C -0.133 4.133 20 C -0.142 4.142 21 C -0.129 4.129 22 C -0.145 4.145 23 C 0.491 3.509 24 O -0.540 6.540 25 O -0.496 6.496 26 H 0.061 0.939 27 H 0.063 0.937 28 H 0.104 0.896 29 H 0.411 0.589 30 H 0.267 0.733 31 H 0.100 0.900 32 H 0.138 0.862 33 H 0.147 0.853 34 H 0.139 0.861 35 H 0.104 0.896 36 H 0.433 0.567 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.830 6.111 7.058 10.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.040 3.960 3 H 0.139 0.861 4 N -0.368 5.368 5 C 0.327 3.673 6 O -0.461 6.461 7 C 0.029 3.971 8 H 0.084 0.916 9 C -0.554 4.554 10 H 0.076 0.924 11 C -0.170 4.170 12 N -0.544 5.544 13 Si 0.779 3.221 14 H -0.205 1.205 15 H -0.208 1.208 16 H -0.188 1.188 17 C -0.042 4.042 18 C -0.126 4.126 19 C -0.151 4.151 20 C -0.160 4.160 21 C -0.147 4.147 22 C -0.163 4.163 23 C 0.333 3.667 24 O -0.430 6.430 25 O -0.309 6.309 26 H 0.080 0.920 27 H 0.082 0.918 28 H 0.123 0.877 29 H 0.248 0.752 30 H 0.076 0.924 31 H 0.118 0.882 32 H 0.156 0.844 33 H 0.165 0.835 34 H 0.157 0.843 35 H 0.123 0.877 36 H 0.296 0.704 Dipole moment (debyes) X Y Z Total from point charges -3.853 6.750 6.653 10.231 hybrid contribution 0.150 -1.874 0.221 1.892 sum -3.703 4.877 6.874 9.205 Atomic orbital electron populations 1.22062 0.90617 1.03459 1.04440 1.20415 0.97348 0.97477 0.80776 0.86094 1.45806 1.67999 1.14956 1.08025 1.21347 0.75137 0.85989 0.84875 1.90553 1.52552 1.17202 1.85767 1.18013 0.99468 0.92439 0.87151 0.91587 1.20761 0.93192 0.97989 1.43418 0.92406 1.25618 0.96385 1.00019 0.94944 1.69985 1.12597 1.27853 1.43960 0.85612 0.79371 0.78320 0.78768 1.20534 1.20772 1.18827 1.20104 0.93293 0.93762 0.97072 1.20874 0.97419 0.97353 0.96954 1.21344 0.98999 0.98212 0.96573 1.21288 0.92005 1.01490 1.01191 1.21294 0.99430 0.97430 0.96548 1.21143 0.97007 0.99381 0.98754 1.23246 0.76083 0.81678 0.85693 1.90755 1.37091 1.27522 1.87583 1.84445 1.71644 1.58735 1.16081 0.91962 0.91750 0.87713 0.75185 0.92393 0.88209 0.84443 0.83494 0.84319 0.87736 0.70438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.77 9.42 71.98 0.68 -3.09 16 2 C 0.15 4.39 3.09 44.25 0.14 4.53 16 3 H 0.12 3.64 7.58 -2.39 -0.02 3.62 16 4 N -0.71 -27.68 4.85 -446.08 -2.16 -29.84 16 5 C 0.54 24.26 7.01 87.66 0.61 24.88 16 6 O -0.58 -27.47 15.08 -3.01 -0.05 -27.51 16 7 C 0.05 2.50 2.44 -13.03 -0.03 2.47 16 8 H 0.07 3.59 7.00 -2.39 -0.02 3.57 16 9 C -0.52 -26.54 7.46 25.60 0.19 -26.35 16 10 H 0.06 2.97 7.82 -2.91 -0.02 2.94 16 11 C 0.03 1.68 5.45 84.65 0.46 2.14 16 12 N -0.91 -49.76 12.78 21.45 0.27 -49.48 16 13 Si 0.95 41.79 29.54 68.60 2.03 43.82 16 14 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 15 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 16 H -0.26 -11.13 7.11 99.48 0.71 -10.42 16 17 C -0.04 -1.97 4.30 -19.87 -0.09 -2.06 16 18 C -0.11 -4.79 8.31 22.27 0.19 -4.61 16 19 C -0.13 -4.91 10.05 22.27 0.22 -4.69 16 20 C -0.14 -4.77 10.05 22.27 0.22 -4.54 16 21 C -0.13 -4.71 10.05 22.27 0.22 -4.49 16 22 C -0.14 -6.38 9.67 22.27 0.22 -6.17 16 23 C 0.49 13.15 7.69 71.24 0.55 13.70 16 24 O -0.54 -18.29 16.60 21.97 0.36 -17.92 16 25 O -0.50 -8.69 13.33 -51.40 -0.68 -9.38 16 26 H 0.06 1.83 8.14 -2.38 -0.02 1.81 16 27 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 28 H 0.10 1.99 8.11 -2.39 -0.02 1.97 16 29 H 0.41 16.79 7.68 -92.71 -0.71 16.07 16 30 H 0.27 13.99 8.31 -92.71 -0.77 13.22 16 31 H 0.10 4.53 7.89 -2.91 -0.02 4.51 16 32 H 0.14 4.11 8.06 -2.91 -0.02 4.09 16 33 H 0.15 3.71 8.06 -2.91 -0.02 3.69 16 34 H 0.14 4.08 8.06 -2.91 -0.02 4.05 16 35 H 0.10 4.61 7.95 -2.91 -0.02 4.59 16 36 H 0.43 3.58 9.10 -74.06 -0.67 2.91 16 Total: -1.00 -66.47 320.39 3.09 -63.38 By element: Atomic # 1 Polarization: 35.48 SS G_CDS: -0.27 Total: 35.22 kcal Atomic # 6 Polarization: -11.86 SS G_CDS: 3.58 Total: -8.28 kcal Atomic # 7 Polarization: -77.44 SS G_CDS: -1.89 Total: -79.33 kcal Atomic # 8 Polarization: -54.44 SS G_CDS: -0.37 Total: -54.81 kcal Atomic # 14 Polarization: 41.79 SS G_CDS: 2.03 Total: 43.82 kcal Total: -66.47 3.09 -63.38 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001573559496.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.019 kcal (2) G-P(sol) polarization free energy of solvation -66.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds