Wall clock time and date at job start Mon Mar 30 2020 01:36:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.47251 * 2 1 4 4 C 1.50701 * 109.47740 * 119.99968 * 2 1 3 5 5 H 1.08001 * 119.99562 * 119.99622 * 4 2 1 6 6 C 1.37875 * 119.99964 * 300.00236 * 4 2 1 7 7 N 1.31518 * 119.99978 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 119.99741 * 179.97438 * 6 4 2 9 9 H 1.48494 * 109.47460 * 359.97438 * 8 6 4 10 10 H 1.48508 * 109.47045 * 120.00134 * 8 6 4 11 11 H 1.48503 * 109.47231 * 239.99808 * 8 6 4 12 12 C 1.50705 * 109.47068 * 240.00381 * 2 1 3 13 13 O 1.21307 * 119.99969 * 240.00071 * 12 2 1 14 14 N 1.34771 * 119.99960 * 59.99614 * 12 2 1 15 15 C 1.40602 * 120.00186 * 180.02562 * 14 12 2 16 16 C 1.35580 * 126.11249 * 0.02562 * 15 14 12 17 17 N 1.35875 * 107.78888 * 179.73867 * 16 15 14 18 18 H 0.96997 * 125.94886 * 180.26600 * 17 16 15 19 19 N 1.40057 * 108.10420 * 0.22526 * 17 16 15 20 20 C 1.31621 * 108.27866 * 0.02562 * 19 17 16 21 21 C 1.48408 * 125.97164 * 180.02562 * 20 19 17 22 22 N 1.34062 * 126.68006 * 179.66457 * 21 20 19 23 23 N 1.28981 * 107.26783 * 179.83567 * 22 21 20 24 24 N 1.28728 * 108.94774 * 0.43452 * 23 22 21 25 25 H 0.97008 * 125.33323 * 179.74677 * 24 23 22 26 26 N 1.28865 * 109.32319 * 359.72410 * 24 23 22 27 27 H 1.09003 * 109.47251 * 179.97438 * 1 2 3 28 28 H 1.09007 * 109.46685 * 299.99867 * 1 2 3 29 29 H 1.08995 * 109.47603 * 59.99751 * 1 2 3 30 30 H 0.96992 * 119.99769 * 180.02562 * 7 6 4 31 31 H 0.97005 * 120.00425 * 0.02562 * 14 12 2 32 32 H 1.08002 * 126.10980 * 0.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1312 6 6 1.6994 -0.2394 2.4827 7 7 0.9436 0.8302 2.6034 8 14 2.3217 -1.1204 4.0078 9 1 3.1458 -2.2876 3.6036 10 1 3.1470 -0.1873 4.8164 11 1 1.1665 -1.5868 4.8160 12 6 2.0323 -0.7104 -1.2306 13 8 2.7297 -1.6967 -1.1193 14 7 1.7066 -0.2499 -2.4546 15 6 2.1748 -0.9129 -3.6027 16 6 2.9567 -2.0203 -3.6229 17 7 3.1802 -2.3470 -4.9227 18 1 3.7051 -3.0990 -5.2387 19 7 2.5201 -1.4093 -5.7268 20 6 1.9171 -0.5430 -4.9406 21 6 1.1029 0.6162 -5.3831 22 7 0.4778 1.5031 -4.5956 23 7 -0.1127 2.3511 -5.3675 24 7 0.1095 2.0260 -6.5930 25 1 -0.2265 2.5010 -7.3692 26 7 0.8487 0.9709 -6.6271 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5139 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 0.7097 1.1617 3.4844 31 1 1.1492 0.5390 -2.5436 32 1 3.3309 -2.5511 -2.7599 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001574472950.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:08 Heat of formation + Delta-G solvation = 140.704545 kcal Electronic energy + Delta-G solvation = -20827.116971 eV Core-core repulsion = 17440.812100 eV Total energy + Delta-G solvation = -3386.304870 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.103 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -45.54840 -42.48139 -40.37837 -35.92981 -35.76145 -35.24513 -34.67010 -32.58198 -32.03590 -29.80743 -27.15304 -26.24649 -25.53911 -24.84268 -22.84374 -21.83774 -20.61127 -20.27429 -19.37101 -18.28236 -18.23710 -17.27573 -16.93182 -16.54283 -16.33426 -16.10849 -15.46234 -15.12917 -14.79680 -14.43857 -14.19918 -13.47743 -13.40788 -12.92658 -12.67079 -12.57077 -12.55967 -12.34351 -12.28489 -12.22017 -12.14870 -11.93349 -11.82918 -10.97493 -10.57616 -10.42991 -10.30240 -8.84692 -8.08869 -6.19386 -0.15205 0.22520 0.89703 1.22981 1.45548 1.47776 1.60195 1.61191 1.65263 2.16101 2.22646 2.49941 2.77946 2.98378 3.21444 3.77040 3.91597 4.25136 4.31877 4.46679 4.63527 4.80417 4.85449 5.01042 5.06839 5.53804 5.58699 5.67916 5.79970 5.98735 6.10846 6.23636 6.39568 6.68457 6.90276 7.04790 7.38057 7.50642 8.97579 Molecular weight = 277.10amu Principal moments of inertia in cm(-1) A = 0.024266 B = 0.004720 C = 0.004003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.591269 B = 5931.265042 C = 6992.980754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.028 3.972 3 H 0.043 0.957 4 C -0.523 4.523 5 H 0.058 0.942 6 C 0.018 3.982 7 N -0.913 5.913 8 Si 0.958 3.042 9 H -0.274 1.274 10 H -0.278 1.278 11 H -0.277 1.277 12 C 0.524 3.476 13 O -0.557 6.557 14 N -0.640 5.640 15 C 0.019 3.981 16 C 0.044 3.956 17 N -0.433 5.433 18 H 0.467 0.533 19 N -0.244 5.244 20 C 0.117 3.883 21 C 0.241 3.759 22 N -0.286 5.286 23 N -0.042 5.042 24 N -0.192 5.192 25 H 0.498 0.502 26 N -0.271 5.271 27 H 0.027 0.973 28 H 0.073 0.927 29 H 0.045 0.955 30 H 0.264 0.736 31 H 0.422 0.578 32 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.784 0.431 -19.155 19.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.007 3.993 3 H 0.061 0.939 4 C -0.562 4.562 5 H 0.077 0.923 6 C -0.181 4.181 7 N -0.552 5.552 8 Si 0.784 3.216 9 H -0.199 1.199 10 H -0.204 1.204 11 H -0.203 1.203 12 C 0.314 3.686 13 O -0.434 6.434 14 N -0.287 5.287 15 C -0.088 4.088 16 C -0.104 4.104 17 N -0.151 5.151 18 H 0.317 0.683 19 N -0.073 5.073 20 C -0.051 4.051 21 C -0.041 4.041 22 N -0.160 5.160 23 N -0.037 5.037 24 N -0.045 5.045 25 H 0.358 0.642 26 N -0.126 5.126 27 H 0.046 0.954 28 H 0.092 0.908 29 H 0.064 0.936 30 H 0.073 0.927 31 H 0.260 0.740 32 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -0.537 0.072 -19.959 19.967 hybrid contribution 0.139 -0.114 1.036 1.051 sum -0.399 -0.041 -18.924 18.928 Atomic orbital electron populations 1.21590 0.95173 0.99661 1.01640 1.18791 0.95256 0.96114 0.89117 0.93915 1.21311 1.31497 1.12808 0.90539 0.92343 1.25619 0.95225 0.95729 1.01530 1.69976 1.37344 1.23701 1.24198 0.85505 0.78199 0.78613 0.79322 1.19911 1.20355 1.20313 1.21695 0.78389 0.84005 0.84509 1.90339 1.38940 1.27653 1.86505 1.43316 1.51693 1.31081 1.02568 1.17877 1.06119 0.98658 0.86116 1.23158 1.00572 0.97717 0.88989 1.46142 1.41383 1.24604 1.02970 0.68301 1.77387 1.11882 1.01148 1.16910 1.18245 1.01995 0.94980 0.89845 1.22011 1.00063 0.96524 0.85459 1.75994 1.10891 1.02741 1.26412 1.78906 1.16792 1.18792 0.89171 1.47809 1.30323 1.16596 1.09736 0.64182 1.75019 1.12091 1.03336 1.22107 0.95390 0.90810 0.93638 0.92698 0.73979 0.77548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.70 8.87 71.98 0.64 -5.06 16 2 C 0.03 1.42 2.64 -12.29 -0.03 1.39 16 3 H 0.04 2.25 8.14 -2.39 -0.02 2.23 16 4 C -0.52 -29.43 8.37 25.60 0.21 -29.21 16 5 H 0.06 3.44 6.75 -2.91 -0.02 3.42 16 6 C 0.02 0.99 5.30 84.65 0.45 1.44 16 7 N -0.91 -51.04 11.32 21.45 0.24 -50.80 16 8 Si 0.96 44.10 29.54 68.60 2.03 46.13 16 9 H -0.27 -12.67 7.11 99.48 0.71 -11.96 16 10 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 11 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 12 C 0.52 23.67 7.12 87.66 0.62 24.30 16 13 O -0.56 -26.74 12.61 -3.11 -0.04 -26.78 16 14 N -0.64 -24.25 5.36 -303.57 -1.63 -25.87 16 15 C 0.02 0.64 6.92 37.84 0.26 0.90 16 16 C 0.04 1.33 10.85 83.45 0.91 2.23 16 17 N -0.43 -10.00 7.39 -56.88 -0.42 -10.42 16 18 H 0.47 6.55 8.96 -213.35 -1.91 4.64 16 19 N -0.24 -6.77 12.73 -47.95 -0.61 -7.38 16 20 C 0.12 3.61 7.18 42.61 0.31 3.92 16 21 C 0.24 6.88 8.24 137.35 1.13 8.01 16 22 N -0.29 -8.23 10.96 -52.20 -0.57 -8.81 16 23 N -0.04 -0.93 13.47 37.02 0.50 -0.44 16 24 N -0.19 -3.03 7.90 37.02 0.29 -2.74 16 25 H 0.50 2.19 8.96 -347.53 -3.12 -0.92 16 26 N -0.27 -6.18 12.40 -52.15 -0.65 -6.83 16 27 H 0.03 1.27 8.14 -2.39 -0.02 1.26 16 28 H 0.07 3.77 6.07 -2.38 -0.01 3.75 16 29 H 0.04 1.80 7.56 -2.39 -0.02 1.78 16 30 H 0.26 13.96 8.31 -92.71 -0.77 13.19 16 31 H 0.42 15.17 6.58 -92.70 -0.61 14.56 16 32 H 0.21 6.58 5.83 -2.91 -0.02 6.56 16 Total: -1.00 -70.15 285.81 -0.75 -70.90 By element: Atomic # 1 Polarization: 19.51 SS G_CDS: -4.40 Total: 15.11 kcal Atomic # 6 Polarization: 3.42 SS G_CDS: 4.50 Total: 7.91 kcal Atomic # 7 Polarization: -110.44 SS G_CDS: -2.84 Total: -113.28 kcal Atomic # 8 Polarization: -26.74 SS G_CDS: -0.04 Total: -26.78 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.13 kcal Total: -70.15 -0.75 -70.90 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574472950.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 211.606 kcal (2) G-P(sol) polarization free energy of solvation -70.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 141.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.902 kcal (6) G-S(sol) free energy of system = (1) + (5) 140.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds