Wall clock time and date at job start Mon Mar 30 2020 01:36:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08993 * 109.47037 * 2 1 4 4 C 1.50700 * 109.47038 * 239.99584 * 2 1 3 5 5 H 1.07996 * 120.00295 * 239.99619 * 4 2 1 6 6 C 1.37888 * 119.99812 * 60.00245 * 4 2 1 7 7 N 1.31510 * 119.99839 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 119.99999 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.46494 * 60.00426 * 8 6 4 10 10 H 1.48499 * 109.46932 * 179.97438 * 8 6 4 11 11 H 1.48499 * 109.47375 * 300.00302 * 8 6 4 12 12 C 1.50697 * 109.46969 * 120.00347 * 2 1 3 13 13 O 1.21283 * 120.00521 * 119.72525 * 12 2 1 14 14 N 1.34784 * 119.99774 * 299.99631 * 12 2 1 15 15 C 1.46499 * 119.99893 * 179.72962 * 14 12 2 16 16 H 1.08990 * 109.47400 * 34.99963 * 15 14 12 17 17 C 1.50707 * 109.46902 * 274.99615 * 15 14 12 18 18 O 1.20828 * 119.99787 * 0.02562 * 17 15 14 19 19 O 1.34227 * 119.99624 * 179.97438 * 17 15 14 20 20 C 1.50705 * 109.46758 * 155.00127 * 15 14 12 21 21 C 1.38231 * 120.00020 * 39.72483 * 20 15 14 22 22 C 1.38241 * 119.99525 * 179.78597 * 21 20 15 23 23 C 1.38231 * 119.99855 * 0.44031 * 22 21 20 24 24 C 1.38235 * 120.00365 * 359.81399 * 23 22 21 25 25 C 1.38230 * 119.99643 * 359.97280 * 24 23 22 26 26 H 1.08996 * 109.47277 * 299.99945 * 1 2 3 27 27 H 1.09003 * 109.47126 * 59.99926 * 1 2 3 28 28 H 1.09001 * 109.47339 * 180.02562 * 1 2 3 29 29 H 0.97001 * 120.00258 * 179.97438 * 7 6 4 30 30 H 0.97005 * 119.99846 * 359.72750 * 14 12 2 31 31 H 0.96706 * 116.99696 * 179.97438 * 19 17 15 32 32 H 1.07998 * 120.00414 * 359.97438 * 21 20 15 33 33 H 1.08001 * 119.99559 * 180.27313 * 22 21 20 34 34 H 1.08008 * 119.99832 * 179.83138 * 23 22 21 35 35 H 1.07994 * 119.99905 * 179.97438 * 24 23 22 36 36 H 1.07998 * 119.99784 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5885 -1.1313 6 6 1.6992 -0.2394 -2.4828 7 7 0.9428 0.8295 -2.6034 8 14 2.3224 -1.1197 -4.0080 9 1 1.8277 -2.5199 -4.0081 10 1 1.8268 -0.4201 -5.2205 11 1 3.8074 -1.1192 -4.0078 12 6 2.0323 -0.7105 1.2304 13 8 2.7254 -1.6995 1.1192 14 7 1.7067 -0.2500 2.4546 15 6 2.1901 -0.9441 3.6507 16 1 3.1878 -1.3404 3.4626 17 6 1.2546 -2.0769 3.9866 18 8 0.2840 -2.2835 3.2972 19 8 1.5002 -2.8570 5.0510 20 6 2.2430 0.0228 4.8055 21 6 1.2369 0.9558 4.9725 22 6 1.2833 1.8398 6.0343 23 6 2.3405 1.7965 6.9238 24 6 3.3494 0.8669 6.7539 25 6 3.3007 -0.0198 5.6946 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 0.7087 1.1612 -3.4844 30 1 1.1523 0.5411 2.5436 31 1 0.8718 -3.5707 5.2266 32 1 0.4130 0.9922 4.2752 33 1 0.4949 2.5659 6.1673 34 1 2.3782 2.4890 7.7519 35 1 4.1755 0.8335 7.4486 36 1 4.0886 -0.7464 5.5620 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001588987730.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:24 Heat of formation + Delta-G solvation = -102.808998 kcal Electronic energy + Delta-G solvation = -21353.496500 eV Core-core repulsion = 17995.586931 eV Total energy + Delta-G solvation = -3357.909569 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.66907 -39.13245 -38.54471 -35.98989 -34.65453 -33.73171 -31.57664 -31.03943 -30.14230 -27.28121 -25.09592 -23.16847 -22.73991 -22.38319 -20.71773 -19.46830 -18.06784 -17.26001 -16.85096 -16.29475 -15.99638 -15.57901 -15.36597 -14.87587 -14.50660 -14.28308 -13.86684 -13.56634 -13.24994 -13.00943 -12.78120 -12.59559 -12.27538 -11.51090 -11.49877 -11.32214 -11.16908 -10.96762 -10.74349 -10.65987 -10.59978 -10.23037 -9.95018 -9.09795 -9.06083 -8.96839 -8.75864 -8.66382 -8.31720 -6.00638 -4.03785 1.07349 1.22950 2.34639 2.87979 3.38658 3.40762 3.45249 3.51507 3.73612 3.98300 4.39514 4.49695 4.69770 4.81872 4.94634 5.21035 5.28829 5.32535 5.38314 5.45911 5.72358 5.85013 6.14447 6.25352 6.32398 6.34547 6.57247 6.66970 6.76843 6.79767 6.89729 6.98033 7.50068 7.78340 7.95375 8.01482 8.11535 8.38316 9.03725 9.11996 9.61106 11.06970 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.025359 B = 0.004545 C = 0.004281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.858785 B = 6158.883998 C = 6538.876822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.033 3.967 3 H 0.055 0.945 4 C -0.502 4.502 5 H 0.074 0.926 6 C 0.059 3.941 7 N -0.896 5.896 8 Si 0.902 3.098 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.276 1.276 12 C 0.528 3.472 13 O -0.540 6.540 14 N -0.723 5.723 15 C 0.200 3.800 16 H 0.130 0.870 17 C 0.467 3.533 18 O -0.493 6.493 19 O -0.517 6.517 20 C -0.089 4.089 21 C -0.107 4.107 22 C -0.117 4.117 23 C -0.115 4.115 24 C -0.119 4.119 25 C -0.092 4.092 26 H 0.011 0.989 27 H 0.093 0.907 28 H 0.033 0.967 29 H 0.261 0.739 30 H 0.403 0.597 31 H 0.406 0.594 32 H 0.125 0.875 33 H 0.125 0.875 34 H 0.123 0.877 35 H 0.125 0.875 36 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.106 2.027 19.938 20.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.012 3.988 3 H 0.072 0.928 4 C -0.540 4.540 5 H 0.092 0.908 6 C -0.142 4.142 7 N -0.536 5.536 8 Si 0.729 3.271 9 H -0.202 1.202 10 H -0.214 1.214 11 H -0.202 1.202 12 C 0.319 3.681 13 O -0.415 6.415 14 N -0.379 5.379 15 C 0.091 3.909 16 H 0.147 0.853 17 C 0.306 3.694 18 O -0.378 6.378 19 O -0.328 6.328 20 C -0.090 4.090 21 C -0.126 4.126 22 C -0.135 4.135 23 C -0.133 4.133 24 C -0.137 4.137 25 C -0.110 4.110 26 H 0.030 0.970 27 H 0.112 0.888 28 H 0.053 0.947 29 H 0.071 0.929 30 H 0.239 0.761 31 H 0.264 0.736 32 H 0.143 0.857 33 H 0.143 0.857 34 H 0.141 0.859 35 H 0.143 0.857 36 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 1.536 1.667 19.378 19.510 hybrid contribution -0.513 -0.593 -0.627 1.004 sum 1.023 1.074 18.751 18.810 Atomic orbital electron populations 1.21726 0.96176 1.00145 1.00797 1.18874 0.94350 0.96807 0.88725 0.92776 1.21086 1.31134 1.12842 0.88934 0.90836 1.24941 0.95087 0.95066 0.99078 1.69860 1.36984 1.23065 1.23646 0.86493 0.79237 0.79736 0.81589 1.20213 1.21368 1.20184 1.22180 0.77662 0.84135 0.84125 1.90532 1.38043 1.26456 1.86478 1.46272 1.56151 1.31556 1.03957 1.18992 0.97857 0.88420 0.85584 0.85302 1.24088 0.85457 0.82658 0.77229 1.90754 1.28689 1.69335 1.49017 1.84528 1.56506 1.44568 1.47198 1.19524 0.96450 0.97025 0.96001 1.21048 0.98237 0.95174 0.98113 1.21123 0.98647 0.98952 0.94741 1.21217 0.94343 0.98582 0.99198 1.21131 0.98984 0.95699 0.97903 1.21016 0.97291 0.98638 0.94053 0.96989 0.88812 0.94747 0.92899 0.76084 0.73615 0.85690 0.85657 0.85933 0.85677 0.85323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.13 8.87 37.16 0.33 -2.80 16 2 C 0.03 0.85 2.64 -92.93 -0.25 0.60 16 3 H 0.05 1.39 8.14 -51.93 -0.42 0.97 16 4 C -0.50 -14.45 8.37 -34.44 -0.29 -14.74 16 5 H 0.07 2.23 6.75 -52.49 -0.35 1.87 16 6 C 0.06 1.66 5.30 -17.82 -0.09 1.56 16 7 N -0.90 -25.38 11.32 55.43 0.63 -24.75 16 8 Si 0.90 22.11 29.54 -169.99 -5.02 17.08 16 9 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 10 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 11 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 12 C 0.53 12.32 6.98 -10.98 -0.08 12.24 16 13 O -0.54 -14.20 15.12 5.56 0.08 -14.12 16 14 N -0.72 -13.09 4.45 -56.06 -0.25 -13.34 16 15 C 0.20 3.11 2.69 -70.23 -0.19 2.92 16 16 H 0.13 2.05 7.44 -51.93 -0.39 1.66 16 17 C 0.47 7.57 7.64 36.01 0.28 7.84 16 18 O -0.49 -9.81 17.08 -18.75 -0.32 -10.13 16 19 O -0.52 -6.34 13.34 -39.25 -0.52 -6.87 16 20 C -0.09 -1.12 4.88 -104.62 -0.51 -1.63 16 21 C -0.11 -1.24 9.06 -39.58 -0.36 -1.60 16 22 C -0.12 -1.12 10.05 -39.58 -0.40 -1.52 16 23 C -0.12 -1.01 10.05 -39.58 -0.40 -1.41 16 24 C -0.12 -1.08 10.05 -39.59 -0.40 -1.48 16 25 C -0.09 -0.98 9.67 -39.59 -0.38 -1.36 16 26 H 0.01 0.23 7.57 -51.93 -0.39 -0.16 16 27 H 0.09 2.43 6.07 -51.93 -0.32 2.12 16 28 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 30 H 0.40 6.43 6.28 -40.82 -0.26 6.18 16 31 H 0.41 3.28 9.10 45.56 0.41 3.69 16 32 H 0.13 1.41 6.90 -52.49 -0.36 1.05 16 33 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 34 H 0.12 0.78 8.06 -52.48 -0.42 0.35 16 35 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 36 H 0.13 1.20 8.04 -52.49 -0.42 0.78 16 LS Contribution 315.31 15.07 4.75 4.75 Total: -1.00 -34.63 315.31 -6.71 -41.33 By element: Atomic # 1 Polarization: 10.72 SS G_CDS: -3.32 Total: 7.40 kcal Atomic # 6 Polarization: 1.37 SS G_CDS: -2.73 Total: -1.36 kcal Atomic # 7 Polarization: -38.47 SS G_CDS: 0.38 Total: -38.09 kcal Atomic # 8 Polarization: -30.35 SS G_CDS: -0.76 Total: -31.11 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -34.63 -6.71 -41.33 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588987730.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.474 kcal (2) G-P(sol) polarization free energy of solvation -34.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds