Wall clock time and date at job start Mon Mar 30 2020 01:36:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08993 * 109.47037 * 2 1 4 4 C 1.50700 * 109.47038 * 239.99584 * 2 1 3 5 5 H 1.07996 * 120.00295 * 239.99619 * 4 2 1 6 6 C 1.37888 * 119.99812 * 60.00245 * 4 2 1 7 7 N 1.31510 * 119.99839 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 119.99999 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.46494 * 60.00426 * 8 6 4 10 10 H 1.48499 * 109.46932 * 179.97438 * 8 6 4 11 11 H 1.48499 * 109.47375 * 300.00302 * 8 6 4 12 12 C 1.50697 * 109.46969 * 120.00347 * 2 1 3 13 13 O 1.21283 * 120.00521 * 119.72525 * 12 2 1 14 14 N 1.34784 * 119.99774 * 299.99631 * 12 2 1 15 15 C 1.46499 * 119.99893 * 179.72962 * 14 12 2 16 16 H 1.08990 * 109.47400 * 34.99963 * 15 14 12 17 17 C 1.50707 * 109.46902 * 274.99615 * 15 14 12 18 18 O 1.20828 * 119.99787 * 0.02562 * 17 15 14 19 19 O 1.34227 * 119.99624 * 179.97438 * 17 15 14 20 20 C 1.50705 * 109.46758 * 155.00127 * 15 14 12 21 21 C 1.38231 * 120.00020 * 39.72483 * 20 15 14 22 22 C 1.38241 * 119.99525 * 179.78597 * 21 20 15 23 23 C 1.38231 * 119.99855 * 0.44031 * 22 21 20 24 24 C 1.38235 * 120.00365 * 359.81399 * 23 22 21 25 25 C 1.38230 * 119.99643 * 359.97280 * 24 23 22 26 26 H 1.08996 * 109.47277 * 299.99945 * 1 2 3 27 27 H 1.09003 * 109.47126 * 59.99926 * 1 2 3 28 28 H 1.09001 * 109.47339 * 180.02562 * 1 2 3 29 29 H 0.97001 * 120.00258 * 179.97438 * 7 6 4 30 30 H 0.97005 * 119.99846 * 359.72750 * 14 12 2 31 31 H 0.96706 * 116.99696 * 179.97438 * 19 17 15 32 32 H 1.07998 * 120.00414 * 359.97438 * 21 20 15 33 33 H 1.08001 * 119.99559 * 180.27313 * 22 21 20 34 34 H 1.08008 * 119.99832 * 179.83138 * 23 22 21 35 35 H 1.07994 * 119.99905 * 179.97438 * 24 23 22 36 36 H 1.07998 * 119.99784 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5885 -1.1313 6 6 1.6992 -0.2394 -2.4828 7 7 0.9428 0.8295 -2.6034 8 14 2.3224 -1.1197 -4.0080 9 1 1.8277 -2.5199 -4.0081 10 1 1.8268 -0.4201 -5.2205 11 1 3.8074 -1.1192 -4.0078 12 6 2.0323 -0.7105 1.2304 13 8 2.7254 -1.6995 1.1192 14 7 1.7067 -0.2500 2.4546 15 6 2.1901 -0.9441 3.6507 16 1 3.1878 -1.3404 3.4626 17 6 1.2546 -2.0769 3.9866 18 8 0.2840 -2.2835 3.2972 19 8 1.5002 -2.8570 5.0510 20 6 2.2430 0.0228 4.8055 21 6 1.2369 0.9558 4.9725 22 6 1.2833 1.8398 6.0343 23 6 2.3405 1.7965 6.9238 24 6 3.3494 0.8669 6.7539 25 6 3.3007 -0.0198 5.6946 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 0.7087 1.1612 -3.4844 30 1 1.1523 0.5411 2.5436 31 1 0.8718 -3.5707 5.2266 32 1 0.4130 0.9922 4.2752 33 1 0.4949 2.5659 6.1673 34 1 2.3782 2.4890 7.7519 35 1 4.1755 0.8335 7.4486 36 1 4.0886 -0.7464 5.5620 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001588987730.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:24 Heat of formation + Delta-G solvation = -126.672064 kcal Electronic energy + Delta-G solvation = -21354.531280 eV Core-core repulsion = 17995.586931 eV Total energy + Delta-G solvation = -3358.944349 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.94792 -40.36141 -39.90792 -37.23296 -36.06829 -35.79521 -33.08735 -31.96211 -31.66110 -28.49004 -27.21568 -24.77611 -23.65429 -23.53151 -21.92317 -21.12800 -19.26552 -18.60900 -18.29590 -18.05999 -17.26979 -17.05346 -16.68686 -16.29991 -15.78250 -15.67085 -15.36246 -14.86339 -14.51919 -14.25730 -14.25216 -13.75101 -13.51470 -13.44318 -12.99307 -12.73215 -12.64107 -12.62796 -12.26380 -12.21980 -12.01172 -11.94772 -11.93311 -11.08307 -10.70772 -10.46515 -10.32609 -9.85052 -9.76962 -8.15755 -6.26406 0.25563 0.47527 1.07405 1.40799 1.43082 1.49930 1.54099 2.00085 2.35904 2.48517 2.93655 3.13843 3.35510 3.79414 4.07960 4.15982 4.22696 4.30888 4.35511 4.59805 4.68207 4.70916 4.90935 4.95153 4.98620 5.11633 5.23468 5.45516 5.47921 5.52530 5.56578 5.60242 5.71996 5.88207 6.05094 6.15688 6.54962 6.81049 6.87629 7.30822 7.43199 8.90214 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.025359 B = 0.004545 C = 0.004281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.858785 B = 6158.883998 C = 6538.876822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.028 3.972 3 H 0.049 0.951 4 C -0.531 4.531 5 H 0.049 0.951 6 C 0.021 3.979 7 N -0.910 5.910 8 Si 0.957 3.043 9 H -0.279 1.279 10 H -0.273 1.273 11 H -0.273 1.273 12 C 0.531 3.469 13 O -0.578 6.578 14 N -0.707 5.707 15 C 0.198 3.802 16 H 0.124 0.876 17 C 0.473 3.527 18 O -0.537 6.537 19 O -0.500 6.500 20 C -0.106 4.106 21 C -0.123 4.123 22 C -0.119 4.119 23 C -0.110 4.110 24 C -0.118 4.118 25 C -0.100 4.100 26 H 0.046 0.954 27 H 0.075 0.925 28 H 0.015 0.985 29 H 0.266 0.734 30 H 0.413 0.587 31 H 0.426 0.574 32 H 0.120 0.880 33 H 0.147 0.853 34 H 0.153 0.847 35 H 0.153 0.847 36 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.412 2.949 21.936 22.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.007 3.993 3 H 0.066 0.934 4 C -0.570 4.570 5 H 0.067 0.933 6 C -0.179 4.179 7 N -0.549 5.549 8 Si 0.783 3.217 9 H -0.205 1.205 10 H -0.198 1.198 11 H -0.199 1.199 12 C 0.321 3.679 13 O -0.456 6.456 14 N -0.361 5.361 15 C 0.091 3.909 16 H 0.141 0.859 17 C 0.314 3.686 18 O -0.426 6.426 19 O -0.313 6.313 20 C -0.107 4.107 21 C -0.142 4.142 22 C -0.137 4.137 23 C -0.128 4.128 24 C -0.135 4.135 25 C -0.118 4.118 26 H 0.065 0.935 27 H 0.093 0.907 28 H 0.035 0.965 29 H 0.075 0.925 30 H 0.252 0.748 31 H 0.288 0.712 32 H 0.138 0.862 33 H 0.164 0.836 34 H 0.171 0.829 35 H 0.171 0.829 36 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 1.828 2.609 21.442 21.677 hybrid contribution -0.598 -0.851 -1.081 1.500 sum 1.230 1.758 20.361 20.474 Atomic orbital electron populations 1.21528 0.95225 0.99083 1.01564 1.18805 0.95094 0.96268 0.89182 0.93351 1.21229 1.31891 1.12843 0.91002 0.93256 1.25605 0.95119 0.95742 1.01421 1.69934 1.36975 1.23508 1.24461 0.85625 0.78790 0.78565 0.78730 1.20462 1.19772 1.19876 1.21698 0.77435 0.83526 0.85261 1.90502 1.39888 1.27980 1.87277 1.45903 1.55166 1.31519 1.03551 1.19121 0.97077 0.89194 0.85528 0.85888 1.24104 0.84635 0.82675 0.77215 1.90742 1.30612 1.70602 1.50678 1.84466 1.56831 1.44721 1.45281 1.19337 0.98181 0.97431 0.95747 1.21130 0.98071 0.95858 0.99112 1.21415 0.99600 0.98677 0.94033 1.21637 0.93368 0.98405 0.99369 1.21488 0.99800 0.94769 0.97465 1.21212 0.96904 0.99436 0.94280 0.93461 0.90664 0.96549 0.92498 0.74833 0.71204 0.86230 0.83560 0.82917 0.82903 0.84475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.65 8.87 71.98 0.64 -5.01 16 2 C 0.03 1.44 2.64 -12.29 -0.03 1.41 16 3 H 0.05 2.55 8.14 -2.39 -0.02 2.53 16 4 C -0.53 -31.53 8.37 25.60 0.21 -31.32 16 5 H 0.05 3.11 6.75 -2.91 -0.02 3.09 16 6 C 0.02 1.17 5.30 84.66 0.45 1.62 16 7 N -0.91 -51.77 11.32 21.45 0.24 -51.53 16 8 Si 0.96 45.67 29.54 68.60 2.03 47.69 16 9 H -0.28 -13.34 7.11 99.48 0.71 -12.64 16 10 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 11 H -0.27 -12.84 7.11 99.48 0.71 -12.14 16 12 C 0.53 25.45 6.98 87.65 0.61 26.06 16 13 O -0.58 -31.51 15.12 -3.04 -0.05 -31.56 16 14 N -0.71 -25.88 4.45 -449.67 -2.00 -27.88 16 15 C 0.20 6.17 2.69 43.50 0.12 6.29 16 16 H 0.12 3.98 7.44 -2.39 -0.02 3.96 16 17 C 0.47 15.26 7.64 71.24 0.54 15.81 16 18 O -0.54 -21.65 17.08 21.96 0.37 -21.28 16 19 O -0.50 -11.65 13.34 -51.39 -0.69 -12.34 16 20 C -0.11 -2.54 4.88 -19.87 -0.10 -2.64 16 21 C -0.12 -2.68 9.06 22.27 0.20 -2.48 16 22 C -0.12 -1.97 10.05 22.27 0.22 -1.75 16 23 C -0.11 -1.51 10.05 22.27 0.22 -1.29 16 24 C -0.12 -1.73 10.05 22.27 0.22 -1.51 16 25 C -0.10 -1.94 9.67 22.27 0.22 -1.72 16 26 H 0.05 1.90 7.57 -2.39 -0.02 1.88 16 27 H 0.07 3.95 6.07 -2.39 -0.01 3.94 16 28 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.27 14.31 8.31 -92.71 -0.77 13.54 16 30 H 0.41 13.19 6.28 -92.70 -0.58 12.61 16 31 H 0.43 6.21 9.10 -74.05 -0.67 5.53 16 32 H 0.12 2.62 6.90 -2.91 -0.02 2.60 16 33 H 0.15 1.73 8.06 -2.91 -0.02 1.71 16 34 H 0.15 1.18 8.06 -2.91 -0.02 1.16 16 35 H 0.15 1.38 8.06 -2.91 -0.02 1.35 16 36 H 0.14 2.33 8.04 -2.91 -0.02 2.30 16 Total: -1.00 -76.08 315.31 3.32 -72.77 By element: Atomic # 1 Polarization: 20.79 SS G_CDS: -0.13 Total: 20.66 kcal Atomic # 6 Polarization: -0.07 SS G_CDS: 3.53 Total: 3.47 kcal Atomic # 7 Polarization: -77.65 SS G_CDS: -1.76 Total: -79.41 kcal Atomic # 8 Polarization: -64.82 SS G_CDS: -0.36 Total: -65.17 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 2.03 Total: 47.69 kcal Total: -76.08 3.32 -72.77 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588987730.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.905 kcal (2) G-P(sol) polarization free energy of solvation -76.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds