Wall clock time and date at job start Mon Mar 30 2020 01:36:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50706 * 109.47238 * 120.00151 * 2 1 3 5 5 H 1.07999 * 120.00196 * 119.99595 * 4 2 1 6 6 C 1.37879 * 119.99394 * 299.99727 * 4 2 1 7 7 N 1.31514 * 119.99350 * 179.97438 * 6 4 2 8 8 Si 1.86789 * 120.00458 * 0.02562 * 6 4 2 9 9 H 1.48500 * 109.47356 * 89.99481 * 8 6 4 10 10 H 1.48501 * 109.47162 * 209.99853 * 8 6 4 11 11 H 1.48503 * 109.47180 * 329.99546 * 8 6 4 12 12 C 1.50708 * 109.47141 * 239.99699 * 2 1 3 13 13 O 1.21275 * 119.99870 * 239.99982 * 12 2 1 14 14 N 1.34777 * 119.99487 * 60.00428 * 12 2 1 15 15 C 1.46500 * 119.99750 * 180.02562 * 14 12 2 16 16 H 1.09001 * 109.46886 * 34.99619 * 15 14 12 17 17 C 1.50697 * 109.46979 * 275.00122 * 15 14 12 18 18 O 1.20821 * 120.00280 * 359.97438 * 17 15 14 19 19 O 1.34237 * 119.99899 * 180.02562 * 17 15 14 20 20 C 1.50698 * 109.47308 * 154.99668 * 15 14 12 21 21 C 1.38236 * 119.99839 * 39.72353 * 20 15 14 22 22 C 1.38236 * 119.99843 * 179.78493 * 21 20 15 23 23 C 1.38230 * 119.99943 * 0.45152 * 22 21 20 24 24 C 1.38241 * 120.00377 * 359.80626 * 23 22 21 25 25 C 1.38235 * 119.99952 * 220.00108 * 20 15 14 26 26 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 27 27 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 28 28 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 29 29 H 0.97005 * 119.99656 * 180.02562 * 7 6 4 30 30 H 0.96996 * 120.00263 * 359.97438 * 14 12 2 31 31 H 0.96696 * 117.00194 * 179.97438 * 19 17 15 32 32 H 1.07996 * 120.00056 * 0.02562 * 21 20 15 33 33 H 1.07997 * 119.99972 * 180.27142 * 22 21 20 34 34 H 1.08000 * 120.00237 * 179.82863 * 23 22 21 35 35 H 1.07996 * 120.00136 * 180.02562 * 24 23 22 36 36 H 1.07996 * 120.00456 * 359.97438 * 25 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 2.1372 -0.8596 3.5565 8 14 0.6248 1.2790 2.6541 9 1 -0.8028 0.8727 2.6997 10 1 0.9760 1.9951 3.9068 11 1 0.8471 2.1765 1.4920 12 6 2.0323 -0.7105 -1.2305 13 8 2.7296 -1.6965 -1.1191 14 7 1.7068 -0.2500 -2.4546 15 6 2.1946 -0.9409 -3.6507 16 1 2.2308 -2.0137 -3.4612 17 6 3.5763 -0.4438 -3.9896 18 8 4.0996 0.4013 -3.3028 19 8 4.2252 -0.9391 -5.0552 20 6 1.2647 -0.6657 -4.8042 21 6 0.7261 0.5963 -4.9719 22 6 -0.1234 0.8499 -6.0325 23 6 -0.4416 -0.1609 -6.9201 24 6 0.0928 -1.4243 -6.7495 25 6 0.9458 -1.6768 -5.6914 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.9026 -0.5284 4.4375 30 1 1.1488 0.5385 -2.5436 31 1 5.1089 -0.5891 -5.2327 32 1 0.9720 1.3851 -4.2764 33 1 -0.5408 1.8370 -6.1660 34 1 -1.1075 0.0365 -7.7472 35 1 -0.1555 -2.2139 -7.4432 36 1 1.3634 -2.6638 -5.5581 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001588987731.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:26 Heat of formation + Delta-G solvation = -93.056924 kcal Electronic energy + Delta-G solvation = -21399.388818 eV Core-core repulsion = 18041.902131 eV Total energy + Delta-G solvation = -3357.486687 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.75807 -39.20183 -38.70874 -36.06331 -34.75993 -33.85656 -31.76140 -31.17048 -30.73390 -27.45303 -25.13399 -23.37609 -22.82419 -22.51851 -20.77085 -19.57445 -18.14417 -17.28670 -16.94129 -16.70958 -16.04228 -15.85618 -15.40460 -14.94588 -14.78295 -14.26588 -14.07030 -13.63015 -13.32917 -13.23240 -12.86555 -12.73668 -12.45419 -12.27328 -11.68186 -11.52571 -11.37448 -11.23689 -11.00865 -10.71435 -10.59347 -10.29498 -9.63450 -9.16962 -9.15471 -9.09937 -8.88157 -8.77625 -8.56041 -6.03657 -4.03965 1.00647 1.16546 2.27477 2.79327 3.24458 3.32933 3.37944 3.39731 3.57970 3.88241 4.31503 4.39375 4.62927 4.75611 4.88367 5.13729 5.22041 5.25901 5.30786 5.37928 5.65565 5.76049 5.81220 6.10904 6.18007 6.25097 6.26341 6.30167 6.42921 6.51474 6.64338 6.70835 6.72497 7.16221 7.52109 7.94342 7.95180 8.54301 8.95476 9.15419 9.54770 11.09300 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.022823 B = 0.005033 C = 0.004519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1226.533754 B = 5561.955659 C = 6194.128850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.002 4.002 3 H 0.056 0.944 4 C -0.505 4.505 5 H 0.094 0.906 6 C 0.071 3.929 7 N -0.895 5.895 8 Si 0.884 3.116 9 H -0.278 1.278 10 H -0.295 1.295 11 H -0.267 1.267 12 C 0.537 3.463 13 O -0.524 6.524 14 N -0.725 5.725 15 C 0.201 3.799 16 H 0.132 0.868 17 C 0.468 3.532 18 O -0.495 6.495 19 O -0.516 6.516 20 C -0.090 4.090 21 C -0.108 4.108 22 C -0.117 4.117 23 C -0.115 4.115 24 C -0.118 4.118 25 C -0.090 4.090 26 H 0.033 0.967 27 H 0.050 0.950 28 H 0.059 0.941 29 H 0.264 0.736 30 H 0.402 0.598 31 H 0.407 0.593 32 H 0.124 0.876 33 H 0.125 0.875 34 H 0.123 0.877 35 H 0.126 0.874 36 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.360 2.847 -22.871 23.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.023 4.023 3 H 0.073 0.927 4 C -0.544 4.544 5 H 0.112 0.888 6 C -0.131 4.131 7 N -0.533 5.533 8 Si 0.714 3.286 9 H -0.205 1.205 10 H -0.223 1.223 11 H -0.192 1.192 12 C 0.327 3.673 13 O -0.398 6.398 14 N -0.381 5.381 15 C 0.092 3.908 16 H 0.149 0.851 17 C 0.307 3.693 18 O -0.380 6.380 19 O -0.327 6.327 20 C -0.090 4.090 21 C -0.127 4.127 22 C -0.135 4.135 23 C -0.133 4.133 24 C -0.136 4.136 25 C -0.109 4.109 26 H 0.052 0.948 27 H 0.069 0.931 28 H 0.078 0.922 29 H 0.074 0.926 30 H 0.238 0.762 31 H 0.265 0.735 32 H 0.142 0.858 33 H 0.143 0.857 34 H 0.141 0.859 35 H 0.144 0.856 36 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -5.068 2.189 -22.250 22.925 hybrid contribution -0.190 1.504 0.086 1.519 sum -5.258 3.693 -22.165 23.077 Atomic orbital electron populations 1.22132 0.97140 1.01659 0.99351 1.19317 0.93283 0.97725 0.92011 0.92655 1.20916 1.32173 1.14121 0.87150 0.88845 1.24966 0.95842 0.96552 0.95723 1.69882 1.45428 1.40166 0.97858 0.86916 0.80656 0.83856 0.77161 1.20469 1.22268 1.19209 1.21431 0.78284 0.84023 0.83606 1.90585 1.36678 1.26299 1.86192 1.46193 1.54733 1.33127 1.04043 1.18990 0.85926 1.00485 0.85354 0.85069 1.24030 0.88712 0.79301 0.77249 1.90748 1.67529 1.30492 1.49251 1.84521 1.35064 1.66116 1.46975 1.19504 0.98655 0.94851 0.96038 1.21026 0.97332 0.96144 0.98175 1.21114 0.98115 0.99484 0.94767 1.21225 0.99585 0.93287 0.99177 1.21149 0.97456 0.97148 0.97881 1.21028 0.97034 0.98808 0.94009 0.94786 0.93149 0.92191 0.92552 0.76192 0.73481 0.85784 0.85686 0.85906 0.85613 0.85230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.98 8.57 37.16 0.32 -2.66 16 2 C 0.00 -0.04 2.23 -92.92 -0.21 -0.25 16 3 H 0.06 1.31 7.20 -51.93 -0.37 0.93 16 4 C -0.51 -14.82 8.96 -34.44 -0.31 -15.13 16 5 H 0.09 3.11 7.00 -52.49 -0.37 2.74 16 6 C 0.07 2.07 5.45 -17.82 -0.10 1.97 16 7 N -0.90 -27.92 13.96 55.43 0.77 -27.15 16 8 Si 0.88 21.52 24.37 -169.99 -4.14 17.38 16 9 H -0.28 -6.49 6.87 56.52 0.39 -6.10 16 10 H -0.30 -7.25 7.11 56.52 0.40 -6.85 16 11 H -0.27 -6.07 6.53 56.52 0.37 -5.70 16 12 C 0.54 12.00 6.98 -10.98 -0.08 11.92 16 13 O -0.52 -13.61 15.12 5.56 0.08 -13.53 16 14 N -0.72 -12.29 4.45 -56.07 -0.25 -12.54 16 15 C 0.20 2.96 2.68 -70.24 -0.19 2.77 16 16 H 0.13 1.99 7.44 -51.93 -0.39 1.60 16 17 C 0.47 7.27 7.64 36.00 0.28 7.55 16 18 O -0.49 -9.50 17.08 -18.75 -0.32 -9.82 16 19 O -0.52 -6.05 13.34 -39.28 -0.52 -6.57 16 20 C -0.09 -1.05 4.88 -104.63 -0.51 -1.56 16 21 C -0.11 -1.15 9.05 -39.58 -0.36 -1.51 16 22 C -0.12 -1.04 10.05 -39.58 -0.40 -1.44 16 23 C -0.11 -0.93 10.05 -39.58 -0.40 -1.33 16 24 C -0.12 -1.00 10.05 -39.58 -0.40 -1.40 16 25 C -0.09 -0.91 9.67 -39.58 -0.38 -1.29 16 26 H 0.03 0.55 7.56 -51.93 -0.39 0.15 16 27 H 0.05 1.08 3.27 -51.93 -0.17 0.91 16 28 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 29 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 30 H 0.40 5.78 6.27 -40.82 -0.26 5.52 16 31 H 0.41 3.08 9.10 45.56 0.41 3.50 16 32 H 0.12 1.26 6.90 -52.49 -0.36 0.90 16 33 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 34 H 0.12 0.71 8.06 -52.49 -0.42 0.29 16 35 H 0.13 0.78 8.06 -52.49 -0.42 0.35 16 36 H 0.13 1.13 8.04 -52.49 -0.42 0.71 16 LS Contribution 308.48 15.07 4.65 4.65 Total: -1.00 -36.76 308.48 -5.65 -42.41 By element: Atomic # 1 Polarization: 10.71 SS G_CDS: -3.19 Total: 7.53 kcal Atomic # 6 Polarization: 0.37 SS G_CDS: -2.73 Total: -2.36 kcal Atomic # 7 Polarization: -40.21 SS G_CDS: 0.52 Total: -39.69 kcal Atomic # 8 Polarization: -29.16 SS G_CDS: -0.76 Total: -29.92 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -4.14 Total: 17.38 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -36.76 -5.65 -42.41 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588987731.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.646 kcal (2) G-P(sol) polarization free energy of solvation -36.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds