Wall clock time and date at job start Mon Mar 30 2020 01:36:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50706 * 109.47238 * 120.00151 * 2 1 3 5 5 H 1.07999 * 120.00196 * 119.99595 * 4 2 1 6 6 C 1.37879 * 119.99394 * 299.99727 * 4 2 1 7 7 N 1.31514 * 119.99350 * 179.97438 * 6 4 2 8 8 Si 1.86789 * 120.00458 * 0.02562 * 6 4 2 9 9 H 1.48500 * 109.47356 * 89.99481 * 8 6 4 10 10 H 1.48501 * 109.47162 * 209.99853 * 8 6 4 11 11 H 1.48503 * 109.47180 * 329.99546 * 8 6 4 12 12 C 1.50708 * 109.47141 * 239.99699 * 2 1 3 13 13 O 1.21275 * 119.99870 * 239.99982 * 12 2 1 14 14 N 1.34777 * 119.99487 * 60.00428 * 12 2 1 15 15 C 1.46500 * 119.99750 * 180.02562 * 14 12 2 16 16 H 1.09001 * 109.46886 * 34.99619 * 15 14 12 17 17 C 1.50697 * 109.46979 * 275.00122 * 15 14 12 18 18 O 1.20821 * 120.00280 * 359.97438 * 17 15 14 19 19 O 1.34237 * 119.99899 * 180.02562 * 17 15 14 20 20 C 1.50698 * 109.47308 * 154.99668 * 15 14 12 21 21 C 1.38236 * 119.99839 * 39.72353 * 20 15 14 22 22 C 1.38236 * 119.99843 * 179.78493 * 21 20 15 23 23 C 1.38230 * 119.99943 * 0.45152 * 22 21 20 24 24 C 1.38241 * 120.00377 * 359.80626 * 23 22 21 25 25 C 1.38235 * 119.99952 * 220.00108 * 20 15 14 26 26 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 27 27 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 28 28 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 29 29 H 0.97005 * 119.99656 * 180.02562 * 7 6 4 30 30 H 0.96996 * 120.00263 * 359.97438 * 14 12 2 31 31 H 0.96696 * 117.00194 * 179.97438 * 19 17 15 32 32 H 1.07996 * 120.00056 * 0.02562 * 21 20 15 33 33 H 1.07997 * 119.99972 * 180.27142 * 22 21 20 34 34 H 1.08000 * 120.00237 * 179.82863 * 23 22 21 35 35 H 1.07996 * 120.00136 * 180.02562 * 24 23 22 36 36 H 1.07996 * 120.00456 * 359.97438 * 25 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 2.1372 -0.8596 3.5565 8 14 0.6248 1.2790 2.6541 9 1 -0.8028 0.8727 2.6997 10 1 0.9760 1.9951 3.9068 11 1 0.8471 2.1765 1.4920 12 6 2.0323 -0.7105 -1.2305 13 8 2.7296 -1.6965 -1.1191 14 7 1.7068 -0.2500 -2.4546 15 6 2.1946 -0.9409 -3.6507 16 1 2.2308 -2.0137 -3.4612 17 6 3.5763 -0.4438 -3.9896 18 8 4.0996 0.4013 -3.3028 19 8 4.2252 -0.9391 -5.0552 20 6 1.2647 -0.6657 -4.8042 21 6 0.7261 0.5963 -4.9719 22 6 -0.1234 0.8499 -6.0325 23 6 -0.4416 -0.1609 -6.9201 24 6 0.0928 -1.4243 -6.7495 25 6 0.9458 -1.6768 -5.6914 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.9026 -0.5284 4.4375 30 1 1.1488 0.5385 -2.5436 31 1 5.1089 -0.5891 -5.2327 32 1 0.9720 1.3851 -4.2764 33 1 -0.5408 1.8370 -6.1660 34 1 -1.1075 0.0365 -7.7472 35 1 -0.1555 -2.2139 -7.4432 36 1 1.3634 -2.6638 -5.5581 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001588987731.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:25 Heat of formation + Delta-G solvation = -121.402674 kcal Electronic energy + Delta-G solvation = -21400.617982 eV Core-core repulsion = 18041.902131 eV Total energy + Delta-G solvation = -3358.715851 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.98468 -40.44038 -39.92550 -37.25808 -36.10080 -35.84423 -33.55021 -32.21363 -31.75462 -28.57633 -27.12167 -24.99203 -23.65185 -23.54165 -21.91012 -21.16755 -19.28700 -18.86070 -18.47518 -18.06344 -17.34104 -17.18550 -16.73319 -16.33081 -15.89332 -15.73486 -15.31471 -15.03343 -14.66787 -14.33432 -14.24290 -14.01185 -13.76351 -13.52566 -13.44591 -12.85273 -12.65699 -12.57853 -12.21310 -12.17000 -11.95838 -11.93443 -11.48727 -11.25184 -10.81117 -10.68174 -10.38498 -9.84350 -9.77039 -8.27960 -6.36133 0.25708 0.48278 1.05446 1.32276 1.40214 1.48889 1.50879 1.91237 2.33670 2.37284 2.93206 3.05516 3.34315 3.78636 4.03297 4.08503 4.20852 4.23848 4.32921 4.39348 4.57937 4.60194 4.67319 4.75885 4.95469 4.98904 5.11254 5.19674 5.43083 5.46485 5.49253 5.53165 5.56414 5.61253 6.05441 6.21068 6.50769 6.78404 6.85627 7.21500 7.33591 8.89742 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.022823 B = 0.005033 C = 0.004519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1226.533754 B = 5561.955659 C = 6194.128850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.007 4.007 3 H 0.066 0.934 4 C -0.522 4.522 5 H 0.030 0.970 6 C 0.007 3.993 7 N -0.951 5.951 8 Si 0.959 3.041 9 H -0.255 1.255 10 H -0.299 1.299 11 H -0.234 1.234 12 C 0.537 3.463 13 O -0.575 6.575 14 N -0.704 5.704 15 C 0.199 3.801 16 H 0.122 0.878 17 C 0.473 3.527 18 O -0.539 6.539 19 O -0.501 6.501 20 C -0.105 4.105 21 C -0.121 4.121 22 C -0.118 4.118 23 C -0.110 4.110 24 C -0.118 4.118 25 C -0.100 4.100 26 H 0.086 0.914 27 H 0.048 0.952 28 H 0.051 0.949 29 H 0.268 0.732 30 H 0.417 0.583 31 H 0.427 0.573 32 H 0.124 0.876 33 H 0.148 0.852 34 H 0.152 0.848 35 H 0.151 0.849 36 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.085 5.031 -25.967 27.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.029 4.029 3 H 0.084 0.916 4 C -0.561 4.561 5 H 0.048 0.952 6 C -0.189 4.189 7 N -0.591 5.591 8 Si 0.784 3.216 9 H -0.181 1.181 10 H -0.227 1.227 11 H -0.157 1.157 12 C 0.326 3.674 13 O -0.452 6.452 14 N -0.359 5.359 15 C 0.091 3.909 16 H 0.140 0.860 17 C 0.314 3.686 18 O -0.428 6.428 19 O -0.313 6.313 20 C -0.106 4.106 21 C -0.139 4.139 22 C -0.136 4.136 23 C -0.128 4.128 24 C -0.136 4.136 25 C -0.119 4.119 26 H 0.104 0.896 27 H 0.066 0.934 28 H 0.070 0.930 29 H 0.077 0.923 30 H 0.256 0.744 31 H 0.288 0.712 32 H 0.142 0.858 33 H 0.166 0.834 34 H 0.170 0.830 35 H 0.169 0.831 36 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -7.807 4.386 -25.443 26.973 hybrid contribution 0.751 0.708 0.890 1.363 sum -7.057 5.094 -24.553 26.050 Atomic orbital electron populations 1.22023 0.93833 1.02067 1.01705 1.19266 0.95878 0.97270 0.90441 0.91639 1.21057 1.31817 1.12907 0.90278 0.95164 1.26024 0.97465 1.00700 0.94736 1.70076 1.47560 1.42770 0.98726 0.85712 0.79010 0.78941 0.77969 1.18054 1.22698 1.15713 1.21184 0.77809 0.83379 0.85005 1.90567 1.39026 1.28541 1.87112 1.45801 1.53748 1.33094 1.03287 1.19106 0.86697 0.99539 0.85515 0.86004 1.24118 0.88875 0.78430 0.77187 1.90734 1.68572 1.32679 1.50855 1.84465 1.36317 1.65364 1.45179 1.19299 0.99463 0.96181 0.95673 1.21136 0.98035 0.95605 0.99162 1.21415 0.97328 1.00853 0.93988 1.21635 0.99020 0.92734 0.99404 1.21476 0.96450 0.98225 0.97455 1.21201 0.97569 0.98748 0.94354 0.89574 0.93384 0.92957 0.92333 0.74416 0.71157 0.85760 0.83419 0.83043 0.83142 0.84721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.33 8.57 71.98 0.62 -4.71 16 2 C -0.01 -0.33 2.23 -12.28 -0.03 -0.36 16 3 H 0.07 2.98 7.20 -2.39 -0.02 2.97 16 4 C -0.52 -32.00 8.96 25.60 0.23 -31.77 16 5 H 0.03 2.17 7.00 -2.91 -0.02 2.15 16 6 C 0.01 0.44 5.45 84.66 0.46 0.90 16 7 N -0.95 -61.95 13.96 21.45 0.30 -61.65 16 8 Si 0.96 43.78 24.37 68.60 1.67 45.45 16 9 H -0.26 -10.70 6.87 99.48 0.68 -10.02 16 10 H -0.30 -13.77 7.11 99.48 0.71 -13.07 16 11 H -0.23 -9.38 6.53 99.48 0.65 -8.73 16 12 C 0.54 24.44 6.98 87.66 0.61 25.06 16 13 O -0.57 -31.56 15.12 -3.01 -0.05 -31.60 16 14 N -0.70 -23.40 4.45 -449.69 -2.00 -25.41 16 15 C 0.20 5.80 2.68 43.50 0.12 5.92 16 16 H 0.12 3.79 7.44 -2.39 -0.02 3.78 16 17 C 0.47 14.62 7.64 71.24 0.54 15.16 16 18 O -0.54 -20.91 17.08 21.98 0.38 -20.54 16 19 O -0.50 -11.23 13.34 -51.48 -0.69 -11.92 16 20 C -0.11 -2.29 4.88 -19.87 -0.10 -2.39 16 21 C -0.12 -2.26 9.05 22.27 0.20 -2.06 16 22 C -0.12 -1.65 10.05 22.27 0.22 -1.43 16 23 C -0.11 -1.32 10.05 22.27 0.22 -1.10 16 24 C -0.12 -1.59 10.05 22.27 0.22 -1.36 16 25 C -0.10 -1.80 9.67 22.27 0.22 -1.59 16 26 H 0.09 2.39 7.56 -2.39 -0.02 2.37 16 27 H 0.05 1.87 3.27 -2.39 -0.01 1.86 16 28 H 0.05 2.07 8.14 -2.38 -0.02 2.05 16 29 H 0.27 16.11 8.31 -92.70 -0.77 15.34 16 30 H 0.42 11.12 6.27 -92.71 -0.58 10.53 16 31 H 0.43 5.91 9.10 -74.06 -0.67 5.23 16 32 H 0.12 2.23 6.90 -2.91 -0.02 2.21 16 33 H 0.15 1.35 8.06 -2.91 -0.02 1.33 16 34 H 0.15 0.96 8.06 -2.91 -0.02 0.93 16 35 H 0.15 1.23 8.06 -2.91 -0.02 1.21 16 36 H 0.13 2.17 8.04 -2.91 -0.02 2.15 16 Total: -1.00 -86.05 308.48 2.96 -83.10 By element: Atomic # 1 Polarization: 22.51 SS G_CDS: -0.20 Total: 22.31 kcal Atomic # 6 Polarization: -3.28 SS G_CDS: 3.54 Total: 0.26 kcal Atomic # 7 Polarization: -85.36 SS G_CDS: -1.70 Total: -87.06 kcal Atomic # 8 Polarization: -63.70 SS G_CDS: -0.36 Total: -64.06 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 1.67 Total: 45.45 kcal Total: -86.05 2.96 -83.10 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588987731.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.305 kcal (2) G-P(sol) polarization free energy of solvation -86.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds