Wall clock time and date at job start Mon Mar 30 2020 01:35:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 109.47289 * 2 1 4 4 C 1.50702 * 109.47162 * 240.00423 * 2 1 3 5 5 H 1.07999 * 120.00385 * 240.00442 * 4 2 1 6 6 C 1.37880 * 120.00016 * 59.99948 * 4 2 1 7 7 N 1.31521 * 120.00055 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00285 * 180.02562 * 6 4 2 9 9 H 1.48494 * 109.47563 * 89.99720 * 8 6 4 10 10 H 1.48506 * 109.46984 * 210.00033 * 8 6 4 11 11 H 1.48501 * 109.46684 * 329.99558 * 8 6 4 12 12 C 1.50705 * 109.47412 * 120.00504 * 2 1 3 13 13 O 1.21286 * 119.99941 * 119.99517 * 12 2 1 14 14 N 1.34774 * 119.99852 * 300.00524 * 12 2 1 15 15 C 1.39919 * 119.99750 * 174.72265 * 14 12 2 16 16 C 1.38895 * 120.07449 * 326.55310 * 15 14 12 17 17 C 1.38088 * 119.93068 * 179.72359 * 16 15 14 18 18 C 1.38305 * 120.06852 * 0.57350 * 17 16 15 19 19 C 1.38258 * 120.14456 * 359.67910 * 18 17 16 20 20 C 1.50697 * 119.96777 * 180.02562 * 19 18 17 21 21 C 1.50707 * 109.46979 * 270.01769 * 20 19 18 22 22 O 1.20825 * 119.99551 * 0.02562 * 21 20 19 23 23 O 1.34221 * 120.00169 * 179.97438 * 21 20 19 24 24 C 1.38137 * 120.06913 * 0.04432 * 19 18 17 25 25 H 1.09005 * 109.46646 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.46969 * 299.99123 * 1 2 3 27 27 H 1.08994 * 109.47269 * 59.99979 * 1 2 3 28 28 H 0.96988 * 120.00026 * 180.02562 * 7 6 4 29 29 H 0.97000 * 120.00163 * 354.71161 * 14 12 2 30 30 H 1.07997 * 120.02774 * 359.97438 * 16 15 14 31 31 H 1.08000 * 119.96280 * 180.24894 * 17 16 15 32 32 H 1.08001 * 119.93129 * 179.70133 * 18 17 16 33 33 H 1.08997 * 109.47005 * 30.01573 * 20 19 18 34 34 H 1.08998 * 109.47539 * 150.02177 * 20 19 18 35 35 H 0.96698 * 116.99976 * 179.97438 * 23 21 20 36 36 H 1.07994 * 120.03537 * 180.02562 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6532 -1.5885 -1.1316 6 6 1.6993 -0.2392 -2.4828 7 7 0.9427 0.8299 -2.6034 8 14 2.3213 -1.1200 -4.0081 9 1 1.3428 -2.1613 -4.4121 10 1 2.4865 -0.1408 -5.1124 11 1 3.6293 -1.7579 -3.7124 12 6 2.0324 -0.7105 1.2304 13 8 2.7297 -1.6967 1.1190 14 7 1.7068 -0.2502 2.4545 15 6 2.0796 -0.9705 3.5947 16 6 2.1285 -2.3580 3.5564 17 6 2.5024 -3.0656 4.6817 18 6 2.8163 -2.3946 5.8496 19 6 2.7635 -1.0137 5.8927 20 6 3.1070 -0.2867 7.1672 21 6 1.8608 -0.1094 7.9958 22 8 0.8025 -0.5306 7.5929 23 8 1.9267 0.5156 9.1818 24 6 2.3958 -0.2998 4.7687 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 0.7081 1.1611 -3.4843 29 1 1.2141 0.5804 2.5451 30 1 1.8784 -2.8827 2.6461 31 1 2.5445 -4.1444 4.6513 32 1 3.1038 -2.9505 6.7298 33 1 3.8384 -0.8664 7.7303 34 1 3.5254 0.6906 6.9266 35 1 1.1010 0.6058 9.6770 36 1 2.3552 0.7788 4.8029 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001588987835.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:57 Heat of formation + Delta-G solvation = -109.806908 kcal Electronic energy + Delta-G solvation = -20641.072289 eV Core-core repulsion = 17282.859268 eV Total energy + Delta-G solvation = -3358.213021 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.61494 -39.85612 -38.15838 -36.31175 -34.40827 -33.84220 -32.64991 -30.75760 -29.25227 -27.90138 -25.19415 -23.49504 -22.90931 -21.90462 -20.85557 -19.16168 -18.31030 -17.32437 -16.65361 -16.29007 -16.25311 -15.94569 -15.65556 -14.94606 -14.51643 -13.97259 -13.89159 -13.45633 -13.12182 -12.97727 -12.71894 -12.49236 -12.23482 -11.72708 -11.62556 -11.55052 -11.12019 -11.04280 -10.79334 -10.78387 -10.70442 -10.36626 -10.02350 -9.86817 -9.04429 -8.81895 -8.61103 -8.38731 -7.74236 -6.07997 -4.11849 1.41278 1.53722 2.01017 2.88729 3.31582 3.37462 3.43571 3.50191 3.70209 4.08403 4.42944 4.45498 4.76258 5.08794 5.15825 5.20858 5.25592 5.28132 5.51655 5.68235 5.81532 5.99722 6.17535 6.26202 6.49000 6.53813 6.63377 6.68631 6.76017 6.82712 6.87030 7.33118 7.40667 7.67520 7.68963 7.89576 8.04422 8.30029 8.96328 9.02330 9.54016 10.99659 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.037849 B = 0.003483 C = 0.003313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.610533 B = 8037.891508 C = 8450.022809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.031 3.969 3 H 0.055 0.945 4 C -0.504 4.504 5 H 0.075 0.925 6 C 0.059 3.941 7 N -0.896 5.896 8 Si 0.901 3.099 9 H -0.280 1.280 10 H -0.287 1.287 11 H -0.272 1.272 12 C 0.519 3.481 13 O -0.523 6.523 14 N -0.689 5.689 15 C 0.169 3.831 16 C -0.118 4.118 17 C -0.099 4.099 18 C -0.132 4.132 19 C -0.069 4.069 20 C -0.067 4.067 21 C 0.476 3.524 22 O -0.502 6.502 23 O -0.522 6.522 24 C -0.141 4.141 25 H 0.032 0.968 26 H 0.013 0.987 27 H 0.095 0.905 28 H 0.262 0.738 29 H 0.407 0.593 30 H 0.137 0.863 31 H 0.123 0.877 32 H 0.117 0.883 33 H 0.114 0.886 34 H 0.114 0.886 35 H 0.409 0.591 36 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.829 0.161 20.543 20.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.010 3.990 3 H 0.073 0.927 4 C -0.542 4.542 5 H 0.093 0.907 6 C -0.142 4.142 7 N -0.535 5.535 8 Si 0.729 3.271 9 H -0.206 1.206 10 H -0.213 1.213 11 H -0.197 1.197 12 C 0.310 3.690 13 O -0.396 6.396 14 N -0.334 5.334 15 C 0.073 3.927 16 C -0.138 4.138 17 C -0.118 4.118 18 C -0.151 4.151 19 C -0.069 4.069 20 C -0.105 4.105 21 C 0.317 3.683 22 O -0.388 6.388 23 O -0.334 6.334 24 C -0.161 4.161 25 H 0.052 0.948 26 H 0.032 0.968 27 H 0.114 0.886 28 H 0.071 0.929 29 H 0.243 0.757 30 H 0.155 0.845 31 H 0.141 0.859 32 H 0.135 0.865 33 H 0.133 0.867 34 H 0.132 0.868 35 H 0.268 0.732 36 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 2.307 -0.586 19.856 19.998 hybrid contribution -0.573 0.142 -0.421 0.725 sum 1.733 -0.444 19.435 19.517 Atomic orbital electron populations 1.21764 0.96203 1.00054 1.01167 1.18909 0.94290 0.96982 0.88814 0.92691 1.21122 1.31272 1.12945 0.88883 0.90675 1.24950 0.95030 0.95022 0.99165 1.69864 1.36934 1.23022 1.23684 0.86426 0.79476 0.79242 0.81939 1.20617 1.21252 1.19694 1.22301 0.77911 0.84685 0.84112 1.90548 1.36138 1.26627 1.86325 1.44153 1.57698 1.26788 1.04790 1.17849 0.96425 0.91457 0.86976 1.21296 1.00439 0.92704 0.99386 1.20955 0.98708 0.99754 0.92343 1.20800 1.02937 0.93196 0.98123 1.18863 1.01585 0.93581 0.92900 1.20228 0.93615 1.03758 0.92874 1.23501 0.91418 0.73927 0.79438 1.90776 1.31702 1.45760 1.70574 1.84528 1.43310 1.72668 1.32911 1.20666 1.03402 0.99384 0.92696 0.94844 0.96775 0.88596 0.92860 0.75707 0.84508 0.85855 0.86504 0.86744 0.86765 0.73218 0.86045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.04 8.87 37.16 0.33 -2.71 16 2 C 0.03 0.76 2.64 -92.92 -0.24 0.51 16 3 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 4 C -0.50 -14.07 8.37 -34.44 -0.29 -14.36 16 5 H 0.08 2.21 6.75 -52.49 -0.35 1.85 16 6 C 0.06 1.63 5.30 -17.82 -0.09 1.53 16 7 N -0.90 -24.84 11.32 55.43 0.63 -24.21 16 8 Si 0.90 21.61 29.54 -169.99 -5.02 16.59 16 9 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 10 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 12 C 0.52 11.66 6.89 -10.98 -0.08 11.58 16 13 O -0.52 -13.22 13.16 5.55 0.07 -13.14 16 14 N -0.69 -12.40 5.19 -9.86 -0.05 -12.45 16 15 C 0.17 2.88 6.28 -83.69 -0.53 2.35 16 16 C -0.12 -2.05 8.66 -39.39 -0.34 -2.40 16 17 C -0.10 -1.41 10.04 -39.61 -0.40 -1.81 16 18 C -0.13 -1.65 9.70 -39.55 -0.38 -2.04 16 19 C -0.07 -0.84 4.37 -104.65 -0.46 -1.30 16 20 C -0.07 -0.57 5.94 -29.03 -0.17 -0.74 16 21 C 0.48 4.70 8.32 36.01 0.30 5.00 16 22 O -0.50 -6.98 16.79 -18.75 -0.31 -7.29 16 23 O -0.52 -3.69 13.42 -39.23 -0.53 -4.22 16 24 C -0.14 -1.98 9.62 -39.39 -0.38 -2.36 16 25 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 26 H 0.01 0.26 7.69 -51.93 -0.40 -0.14 16 27 H 0.10 2.39 6.07 -51.93 -0.32 2.08 16 28 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 29 H 0.41 6.21 8.41 -40.82 -0.34 5.86 16 30 H 0.14 2.68 6.43 -52.49 -0.34 2.34 16 31 H 0.12 1.47 8.06 -52.49 -0.42 1.05 16 32 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 33 H 0.11 0.70 8.08 -51.93 -0.42 0.28 16 34 H 0.11 0.76 8.08 -51.93 -0.42 0.34 16 35 H 0.41 1.33 9.10 45.56 0.41 1.75 16 36 H 0.12 1.44 8.06 -52.49 -0.42 1.02 16 LS Contribution 315.11 15.07 4.75 4.75 Total: -1.00 -33.83 315.11 -6.62 -40.44 By element: Atomic # 1 Polarization: 9.69 SS G_CDS: -3.42 Total: 6.27 kcal Atomic # 6 Polarization: -4.00 SS G_CDS: -2.73 Total: -6.73 kcal Atomic # 7 Polarization: -37.24 SS G_CDS: 0.58 Total: -36.66 kcal Atomic # 8 Polarization: -23.88 SS G_CDS: -0.77 Total: -24.65 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -33.83 -6.62 -40.44 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588987835.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.362 kcal (2) G-P(sol) polarization free energy of solvation -33.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds