Wall clock time and date at job start Mon Mar 30 2020 01:35:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 109.47289 * 2 1 4 4 C 1.50702 * 109.47162 * 240.00423 * 2 1 3 5 5 H 1.07999 * 120.00385 * 240.00442 * 4 2 1 6 6 C 1.37880 * 120.00016 * 59.99948 * 4 2 1 7 7 N 1.31521 * 120.00055 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00285 * 180.02562 * 6 4 2 9 9 H 1.48494 * 109.47563 * 89.99720 * 8 6 4 10 10 H 1.48506 * 109.46984 * 210.00033 * 8 6 4 11 11 H 1.48501 * 109.46684 * 329.99558 * 8 6 4 12 12 C 1.50705 * 109.47412 * 120.00504 * 2 1 3 13 13 O 1.21286 * 119.99941 * 119.99517 * 12 2 1 14 14 N 1.34774 * 119.99852 * 300.00524 * 12 2 1 15 15 C 1.39919 * 119.99750 * 174.72265 * 14 12 2 16 16 C 1.38895 * 120.07449 * 326.55310 * 15 14 12 17 17 C 1.38088 * 119.93068 * 179.72359 * 16 15 14 18 18 C 1.38305 * 120.06852 * 0.57350 * 17 16 15 19 19 C 1.38258 * 120.14456 * 359.67910 * 18 17 16 20 20 C 1.50697 * 119.96777 * 180.02562 * 19 18 17 21 21 C 1.50707 * 109.46979 * 270.01769 * 20 19 18 22 22 O 1.20825 * 119.99551 * 0.02562 * 21 20 19 23 23 O 1.34221 * 120.00169 * 179.97438 * 21 20 19 24 24 C 1.38137 * 120.06913 * 0.04432 * 19 18 17 25 25 H 1.09005 * 109.46646 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.46969 * 299.99123 * 1 2 3 27 27 H 1.08994 * 109.47269 * 59.99979 * 1 2 3 28 28 H 0.96988 * 120.00026 * 180.02562 * 7 6 4 29 29 H 0.97000 * 120.00163 * 354.71161 * 14 12 2 30 30 H 1.07997 * 120.02774 * 359.97438 * 16 15 14 31 31 H 1.08000 * 119.96280 * 180.24894 * 17 16 15 32 32 H 1.08001 * 119.93129 * 179.70133 * 18 17 16 33 33 H 1.08997 * 109.47005 * 30.01573 * 20 19 18 34 34 H 1.08998 * 109.47539 * 150.02177 * 20 19 18 35 35 H 0.96698 * 116.99976 * 179.97438 * 23 21 20 36 36 H 1.07994 * 120.03537 * 180.02562 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6532 -1.5885 -1.1316 6 6 1.6993 -0.2392 -2.4828 7 7 0.9427 0.8299 -2.6034 8 14 2.3213 -1.1200 -4.0081 9 1 1.3428 -2.1613 -4.4121 10 1 2.4865 -0.1408 -5.1124 11 1 3.6293 -1.7579 -3.7124 12 6 2.0324 -0.7105 1.2304 13 8 2.7297 -1.6967 1.1190 14 7 1.7068 -0.2502 2.4545 15 6 2.0796 -0.9705 3.5947 16 6 2.1285 -2.3580 3.5564 17 6 2.5024 -3.0656 4.6817 18 6 2.8163 -2.3946 5.8496 19 6 2.7635 -1.0137 5.8927 20 6 3.1070 -0.2867 7.1672 21 6 1.8608 -0.1094 7.9958 22 8 0.8025 -0.5306 7.5929 23 8 1.9267 0.5156 9.1818 24 6 2.3958 -0.2998 4.7687 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 0.7081 1.1611 -3.4843 29 1 1.2141 0.5804 2.5451 30 1 1.8784 -2.8827 2.6461 31 1 2.5445 -4.1444 4.6513 32 1 3.1038 -2.9505 6.7298 33 1 3.8384 -0.8664 7.7303 34 1 3.5254 0.6906 6.9266 35 1 1.1010 0.6058 9.6770 36 1 2.3552 0.7788 4.8029 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001588987835.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:56 Heat of formation + Delta-G solvation = -133.020638 kcal Electronic energy + Delta-G solvation = -20642.078912 eV Core-core repulsion = 17282.859268 eV Total energy + Delta-G solvation = -3359.219644 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.61612 -41.07469 -39.47368 -37.03160 -35.90361 -35.78356 -33.69227 -32.62419 -30.54066 -28.88015 -27.24601 -25.12336 -23.90538 -23.13049 -22.07341 -20.64760 -19.01718 -18.74802 -18.20172 -17.61346 -17.26487 -17.10218 -16.98290 -16.48006 -16.20162 -15.36999 -15.19684 -14.68015 -14.57790 -14.22912 -14.08801 -13.62906 -13.36102 -13.16728 -12.99953 -12.77446 -12.64947 -12.58551 -12.44939 -12.26013 -12.17378 -12.03120 -11.60908 -11.24827 -11.09264 -10.63727 -10.38023 -9.77204 -9.03555 -8.18136 -6.28965 0.30683 0.39207 1.30485 1.40006 1.40807 1.52504 1.79419 2.20761 2.27038 2.46143 2.95912 3.11876 3.59832 3.92300 4.12095 4.20401 4.36824 4.40615 4.54854 4.59437 4.65987 4.69612 4.77957 4.88821 4.94819 5.06188 5.36324 5.41241 5.46689 5.57663 5.60847 5.70393 5.70851 5.88448 6.11204 6.15910 6.60011 6.79950 7.07756 7.31112 7.42426 8.87913 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.037849 B = 0.003483 C = 0.003313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.610533 B = 8037.891508 C = 8450.022809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.028 3.972 3 H 0.048 0.952 4 C -0.531 4.531 5 H 0.050 0.950 6 C 0.021 3.979 7 N -0.910 5.910 8 Si 0.957 3.043 9 H -0.275 1.275 10 H -0.274 1.274 11 H -0.278 1.278 12 C 0.522 3.478 13 O -0.560 6.560 14 N -0.672 5.672 15 C 0.135 3.865 16 C -0.148 4.148 17 C -0.105 4.105 18 C -0.124 4.124 19 C -0.065 4.065 20 C -0.066 4.066 21 C 0.484 3.516 22 O -0.550 6.550 23 O -0.512 6.512 24 C -0.138 4.138 25 H 0.022 0.978 26 H 0.050 0.950 27 H 0.074 0.926 28 H 0.266 0.734 29 H 0.420 0.580 30 H 0.102 0.898 31 H 0.141 0.859 32 H 0.153 0.847 33 H 0.148 0.852 34 H 0.140 0.860 35 H 0.427 0.573 36 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.511 0.838 23.112 23.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.007 3.993 3 H 0.065 0.935 4 C -0.570 4.570 5 H 0.068 0.932 6 C -0.178 4.178 7 N -0.549 5.549 8 Si 0.782 3.218 9 H -0.200 1.200 10 H -0.199 1.199 11 H -0.203 1.203 12 C 0.313 3.687 13 O -0.437 6.437 14 N -0.318 5.318 15 C 0.040 3.960 16 C -0.169 4.169 17 C -0.123 4.123 18 C -0.143 4.143 19 C -0.066 4.066 20 C -0.103 4.103 21 C 0.328 3.672 22 O -0.441 6.441 23 O -0.326 6.326 24 C -0.159 4.159 25 H 0.041 0.959 26 H 0.069 0.931 27 H 0.093 0.907 28 H 0.075 0.925 29 H 0.258 0.742 30 H 0.120 0.880 31 H 0.159 0.841 32 H 0.171 0.829 33 H 0.166 0.834 34 H 0.157 0.843 35 H 0.288 0.712 36 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 2.972 0.134 22.493 22.689 hybrid contribution -0.769 -0.050 -1.021 1.279 sum 2.203 0.084 21.471 21.584 Atomic orbital electron populations 1.21582 0.94941 0.99504 1.01893 1.18822 0.95285 0.96223 0.89010 0.93465 1.21269 1.31858 1.12874 0.90977 0.93155 1.25593 0.95112 0.95700 1.01434 1.69939 1.37048 1.23505 1.24453 0.85575 0.78644 0.78523 0.79033 1.20023 1.19883 1.20303 1.21825 0.77725 0.84090 0.85099 1.90526 1.37999 1.28157 1.87060 1.43725 1.57130 1.26980 1.03970 1.18080 0.98933 0.91492 0.87461 1.21215 1.02881 0.93349 0.99453 1.21206 0.98248 1.00803 0.92077 1.21266 1.00926 0.93755 0.98336 1.19325 0.99450 0.93830 0.93959 1.20345 0.93675 1.05204 0.91028 1.23640 0.90919 0.72869 0.79739 1.90781 1.33482 1.48043 1.71780 1.84485 1.44566 1.71618 1.31924 1.20958 1.02339 1.00663 0.91921 0.95914 0.93070 0.90685 0.92484 0.74224 0.87968 0.84111 0.82935 0.83423 0.84250 0.71183 0.83812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.58 8.87 71.98 0.64 -4.94 16 2 C 0.03 1.40 2.64 -12.28 -0.03 1.37 16 3 H 0.05 2.43 8.14 -2.39 -0.02 2.41 16 4 C -0.53 -30.78 8.37 25.60 0.21 -30.57 16 5 H 0.05 3.11 6.75 -2.91 -0.02 3.09 16 6 C 0.02 1.17 5.30 84.65 0.45 1.62 16 7 N -0.91 -50.94 11.32 21.45 0.24 -50.70 16 8 Si 0.96 44.93 29.54 68.60 2.03 46.95 16 9 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 10 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 11 H -0.28 -13.21 7.11 99.48 0.71 -12.51 16 12 C 0.52 24.38 6.89 87.66 0.60 24.99 16 13 O -0.56 -29.94 13.16 -3.05 -0.04 -29.98 16 14 N -0.67 -24.55 5.19 -303.50 -1.58 -26.12 16 15 C 0.13 4.61 6.28 38.16 0.24 4.85 16 16 C -0.15 -5.35 8.66 22.39 0.19 -5.16 16 17 C -0.10 -2.92 10.04 22.25 0.22 -2.70 16 18 C -0.12 -2.76 9.70 22.29 0.22 -2.55 16 19 C -0.06 -1.40 4.37 -19.88 -0.09 -1.48 16 20 C -0.07 -0.81 5.94 29.10 0.17 -0.64 16 21 C 0.48 7.80 8.32 71.24 0.59 8.40 16 22 O -0.55 -14.03 16.79 21.97 0.37 -13.66 16 23 O -0.51 -5.24 13.42 -51.33 -0.69 -5.93 16 24 C -0.14 -3.63 9.62 22.39 0.22 -3.42 16 25 H 0.02 1.04 8.14 -2.38 -0.02 1.02 16 26 H 0.05 1.91 7.69 -2.39 -0.02 1.90 16 27 H 0.07 3.79 6.07 -2.39 -0.01 3.78 16 28 H 0.27 14.07 8.31 -92.72 -0.77 13.30 16 29 H 0.42 12.63 8.41 -92.71 -0.78 11.85 16 30 H 0.10 4.33 6.43 -2.91 -0.02 4.31 16 31 H 0.14 3.26 8.06 -2.91 -0.02 3.24 16 32 H 0.15 2.29 8.06 -2.91 -0.02 2.26 16 33 H 0.15 0.93 8.08 -2.39 -0.02 0.91 16 34 H 0.14 1.12 8.08 -2.39 -0.02 1.10 16 35 H 0.43 1.34 9.10 -74.06 -0.67 0.66 16 36 H 0.14 3.02 8.06 -2.91 -0.02 2.99 16 Total: -1.00 -76.39 315.11 3.65 -72.74 By element: Atomic # 1 Polarization: 17.26 SS G_CDS: -0.32 Total: 16.94 kcal Atomic # 6 Polarization: -13.87 SS G_CDS: 3.64 Total: -10.23 kcal Atomic # 7 Polarization: -75.49 SS G_CDS: -1.33 Total: -76.82 kcal Atomic # 8 Polarization: -49.21 SS G_CDS: -0.36 Total: -49.58 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.95 kcal Total: -76.39 3.65 -72.74 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588987835.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.278 kcal (2) G-P(sol) polarization free energy of solvation -76.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds