Wall clock time and date at job start Mon Mar 30 2020 01:36:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09000 * 109.47244 * 2 1 4 4 C 1.50696 * 109.47310 * 239.99724 * 2 1 3 5 5 H 1.08001 * 119.99910 * 275.05811 * 4 2 1 6 6 C 1.37880 * 120.00098 * 95.32560 * 4 2 1 7 7 N 1.31517 * 120.00134 * 184.55861 * 6 4 2 8 8 Si 1.86798 * 119.99971 * 4.56116 * 6 4 2 9 9 H 1.48498 * 109.47117 * 85.11771 * 8 6 4 10 10 H 1.48499 * 109.47046 * 205.11782 * 8 6 4 11 11 H 1.48498 * 109.47058 * 325.12059 * 8 6 4 12 12 C 1.50700 * 109.47093 * 119.99738 * 2 1 3 13 13 O 1.21281 * 119.99933 * 120.00222 * 12 2 1 14 14 N 1.34779 * 120.00202 * 300.00046 * 12 2 1 15 15 C 1.46499 * 120.00292 * 179.97438 * 14 12 2 16 16 C 1.50696 * 109.47096 * 179.97438 * 15 14 12 17 17 C 1.37968 * 120.08007 * 259.99827 * 16 15 14 18 18 C 1.38339 * 120.15338 * 179.97438 * 17 16 15 19 19 C 1.38386 * 120.30117 * 0.02712 * 18 17 16 20 20 C 1.37927 * 120.15530 * 359.97438 * 19 18 17 21 21 C 1.39606 * 120.07391 * 79.73058 * 16 15 14 22 22 C 1.47731 * 120.15048 * 359.97188 * 21 16 15 23 23 O 1.21465 * 119.99785 * 0.02562 * 22 21 16 24 24 O 1.34711 * 119.99837 * 180.02562 * 22 21 16 25 25 H 1.08995 * 109.47426 * 185.13394 * 1 2 3 26 26 H 1.09001 * 109.47409 * 305.13018 * 1 2 3 27 27 H 1.09000 * 109.47372 * 65.12897 * 1 2 3 28 28 H 0.96996 * 120.00299 * 180.02562 * 7 6 4 29 29 H 0.97003 * 119.99705 * 359.97438 * 14 12 2 30 30 H 1.09000 * 109.46820 * 300.00013 * 15 14 12 31 31 H 1.09007 * 109.47115 * 59.99994 * 15 14 12 32 32 H 1.08006 * 119.91897 * 0.02562 * 17 16 15 33 33 H 1.08000 * 119.85237 * 179.97438 * 18 17 16 34 34 H 1.08004 * 119.92490 * 179.97438 * 19 18 17 35 35 H 1.07994 * 120.08118 * 179.97438 * 20 19 18 36 36 H 0.96696 * 116.99782 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.1346 -1.7856 -1.2292 6 6 2.3666 0.0126 -2.3558 7 7 2.7192 -0.6121 -3.4581 8 14 2.3188 1.8795 -2.3148 9 1 3.6036 2.3959 -1.7782 10 1 2.1121 2.3997 -3.6902 11 1 1.2029 2.3271 -1.4433 12 6 2.0323 -0.7103 1.2305 13 8 2.7296 -1.6964 1.1192 14 7 1.7067 -0.2499 2.4546 15 6 2.1945 -0.9407 3.6508 16 6 1.6928 -0.2298 4.8812 17 6 2.5207 0.6362 5.5654 18 6 2.0615 1.2900 6.6948 19 6 0.7704 1.0803 7.1465 20 6 -0.0680 0.2172 6.4722 21 6 0.3873 -0.4417 5.3281 22 6 -0.5071 -1.3625 4.5969 23 8 -0.1069 -1.9376 3.6047 24 8 -1.7664 -1.5644 5.0306 25 1 -0.3634 -1.0235 0.0920 26 1 -0.3634 0.5913 0.8405 27 1 -0.3634 0.4322 -0.9323 28 1 2.9547 -0.1035 -4.2497 29 1 1.1493 0.5390 2.5436 30 1 1.8307 -1.9682 3.6507 31 1 3.2846 -0.9412 3.6510 32 1 3.5294 0.8046 5.2180 33 1 2.7139 1.9665 7.2269 34 1 0.4183 1.5936 8.0291 35 1 -1.0752 0.0541 6.8260 36 1 -2.3139 -2.1760 4.5196 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001588988297.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:13 Heat of formation + Delta-G solvation = -128.845160 kcal Electronic energy + Delta-G solvation = -21322.081563 eV Core-core repulsion = 17963.042981 eV Total energy + Delta-G solvation = -3359.038582 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.70975 -40.46341 -39.60520 -37.19482 -35.76241 -35.61012 -33.48153 -32.38910 -32.09216 -27.66528 -27.21590 -25.37554 -24.06210 -23.10904 -21.78790 -21.01901 -19.13773 -19.05797 -18.44059 -17.77735 -17.05181 -16.71354 -16.53115 -16.36119 -15.94741 -15.71331 -15.33171 -14.93939 -14.49690 -14.28680 -14.07118 -13.93025 -13.65213 -13.47628 -13.07290 -12.95914 -12.72713 -12.63182 -12.54107 -12.16538 -12.08509 -11.76101 -11.35498 -11.25204 -10.76194 -10.55817 -10.05309 -9.93310 -9.81486 -8.27572 -6.34460 -0.35424 0.27513 1.34765 1.38757 1.49242 1.57866 1.94390 2.06785 2.35484 2.42078 2.87293 3.10583 3.55488 3.74386 4.09938 4.11410 4.20849 4.31236 4.37006 4.51259 4.61276 4.67899 4.71217 4.81638 4.87518 5.00693 5.09928 5.28668 5.44569 5.45422 5.47965 5.55330 5.59110 5.64626 5.87253 6.26007 6.65453 6.85073 6.98798 7.26851 7.55433 8.90857 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.023750 B = 0.004791 C = 0.004483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.649072 B = 5842.553861 C = 6244.100021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.006 4.006 3 H 0.073 0.927 4 C -0.508 4.508 5 H 0.018 0.982 6 C 0.006 3.994 7 N -0.952 5.952 8 Si 0.950 3.050 9 H -0.266 1.266 10 H -0.282 1.282 11 H -0.225 1.225 12 C 0.521 3.479 13 O -0.588 6.588 14 N -0.707 5.707 15 C 0.153 3.847 16 C -0.054 4.054 17 C -0.119 4.119 18 C -0.073 4.073 19 C -0.121 4.121 20 C -0.059 4.059 21 C -0.132 4.132 22 C 0.514 3.486 23 O -0.531 6.531 24 O -0.506 6.506 25 H 0.031 0.969 26 H 0.068 0.932 27 H 0.057 0.943 28 H 0.268 0.732 29 H 0.405 0.595 30 H 0.067 0.933 31 H 0.061 0.939 32 H 0.142 0.858 33 H 0.164 0.836 34 H 0.168 0.832 35 H 0.156 0.844 36 H 0.430 0.570 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.503 10.089 27.463 30.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.028 4.028 3 H 0.091 0.909 4 C -0.546 4.546 5 H 0.036 0.964 6 C -0.191 4.191 7 N -0.592 5.592 8 Si 0.771 3.229 9 H -0.191 1.191 10 H -0.208 1.208 11 H -0.148 1.148 12 C 0.309 3.691 13 O -0.467 6.467 14 N -0.360 5.360 15 C 0.030 3.970 16 C -0.055 4.055 17 C -0.137 4.137 18 C -0.091 4.091 19 C -0.138 4.138 20 C -0.077 4.077 21 C -0.134 4.134 22 C 0.359 3.641 23 O -0.421 6.421 24 O -0.319 6.319 25 H 0.050 0.950 26 H 0.087 0.913 27 H 0.076 0.924 28 H 0.077 0.923 29 H 0.240 0.760 30 H 0.085 0.915 31 H 0.079 0.921 32 H 0.160 0.840 33 H 0.182 0.818 34 H 0.185 0.815 35 H 0.173 0.827 36 H 0.291 0.709 Dipole moment (debyes) X Y Z Total from point charges -7.619 9.483 27.163 29.763 hybrid contribution -0.235 -0.373 -1.214 1.292 sum -7.853 9.110 25.950 28.602 Atomic orbital electron populations 1.21755 0.94201 1.00425 1.01456 1.19309 0.95959 0.96991 0.90543 0.90917 1.20852 1.43625 0.93646 0.96484 0.96392 1.26113 0.93798 1.04924 0.94237 1.70081 1.47676 1.38493 1.02958 0.85712 0.80621 0.78094 0.78441 1.19141 1.20769 1.14794 1.21470 0.78539 0.83829 0.85251 1.90544 1.40103 1.28682 1.87369 1.45762 1.54189 1.31776 1.04228 1.20253 0.97900 0.96869 0.81971 1.19882 0.93014 0.96960 0.95618 1.21310 1.00467 0.95728 0.96232 1.21849 0.96410 0.96822 0.94037 1.21653 0.93467 0.97752 1.00956 1.21709 1.01225 0.93221 0.91583 1.19031 0.93052 1.01831 0.99480 1.21293 0.81219 0.79779 0.81822 1.91036 1.75329 1.48850 1.26929 1.84464 1.24037 1.64805 1.58626 0.94999 0.91296 0.92406 0.92325 0.76009 0.91461 0.92061 0.83981 0.81813 0.81490 0.82650 0.70891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.04 9.03 71.98 0.65 -4.39 16 2 C -0.01 -0.31 2.30 -12.29 -0.03 -0.34 16 3 H 0.07 3.27 5.28 -2.39 -0.01 3.26 16 4 C -0.51 -31.90 8.36 25.60 0.21 -31.69 16 5 H 0.02 1.32 7.61 -2.91 -0.02 1.30 16 6 C 0.01 0.34 5.47 84.65 0.46 0.80 16 7 N -0.95 -62.78 13.96 21.45 0.30 -62.48 16 8 Si 0.95 43.76 26.99 68.60 1.85 45.61 16 9 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 10 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 11 H -0.23 -8.91 6.81 99.48 0.68 -8.23 16 12 C 0.52 25.54 7.15 87.66 0.63 26.16 16 13 O -0.59 -35.10 15.77 -3.03 -0.05 -35.14 16 14 N -0.71 -25.95 4.72 -466.78 -2.20 -28.16 16 15 C 0.15 5.06 4.82 85.63 0.41 5.47 16 16 C -0.05 -1.25 5.28 -19.60 -0.10 -1.35 16 17 C -0.12 -1.97 9.66 22.23 0.21 -1.76 16 18 C -0.07 -0.75 10.04 22.33 0.22 -0.52 16 19 C -0.12 -1.09 10.03 22.23 0.22 -0.87 16 20 C -0.06 -0.80 9.62 22.54 0.22 -0.59 16 21 C -0.13 -2.79 5.87 -20.10 -0.12 -2.91 16 22 C 0.51 12.74 8.24 70.33 0.58 13.32 16 23 O -0.53 -18.33 13.53 19.95 0.27 -18.06 16 24 O -0.51 -8.54 12.68 -56.21 -0.71 -9.25 16 25 H 0.03 1.41 8.14 -2.39 -0.02 1.40 16 26 H 0.07 2.24 7.71 -2.39 -0.02 2.22 16 27 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 28 H 0.27 16.27 8.31 -92.71 -0.77 15.50 16 29 H 0.40 12.29 7.98 -92.71 -0.74 11.55 16 30 H 0.07 2.65 5.95 -2.39 -0.01 2.63 16 31 H 0.06 2.04 8.00 -2.38 -0.02 2.02 16 32 H 0.14 2.11 8.03 -2.91 -0.02 2.09 16 33 H 0.16 0.62 8.06 -2.91 -0.02 0.60 16 34 H 0.17 0.38 8.06 -2.91 -0.02 0.36 16 35 H 0.16 1.53 7.61 -2.91 -0.02 1.51 16 36 H 0.43 4.31 9.11 -74.06 -0.67 3.64 16 Total: -1.00 -89.82 312.55 2.72 -87.10 By element: Atomic # 1 Polarization: 19.35 SS G_CDS: -0.31 Total: 19.04 kcal Atomic # 6 Polarization: -2.23 SS G_CDS: 3.57 Total: 1.34 kcal Atomic # 7 Polarization: -88.73 SS G_CDS: -1.90 Total: -90.63 kcal Atomic # 8 Polarization: -61.97 SS G_CDS: -0.49 Total: -62.46 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 1.85 Total: 45.61 kcal Total: -89.82 2.72 -87.10 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588988297.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.750 kcal (2) G-P(sol) polarization free energy of solvation -89.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds