Wall clock time and date at job start Mon Mar 30 2020 01:36:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.47011 * 2 1 4 4 C 1.50701 * 109.47000 * 239.99279 * 2 1 3 5 5 H 1.08002 * 119.99761 * 239.99828 * 4 2 1 6 6 C 1.37871 * 119.99694 * 60.28391 * 4 2 1 7 7 N 1.31514 * 120.00482 * 359.71466 * 6 4 2 8 8 Si 1.86801 * 119.99746 * 179.72062 * 6 4 2 9 9 H 1.48504 * 109.47266 * 60.00049 * 8 6 4 10 10 H 1.48504 * 109.46970 * 179.97438 * 8 6 4 11 11 H 1.48499 * 109.47383 * 299.99456 * 8 6 4 12 12 N 1.46499 * 109.46437 * 119.99604 * 2 1 3 13 13 C 1.39457 * 120.00169 * 274.99472 * 12 2 1 14 14 C 1.38739 * 120.12199 * 0.02562 * 13 12 2 15 15 C 1.38339 * 120.01608 * 179.97438 * 14 13 12 16 16 F 1.35102 * 119.86547 * 180.02562 * 15 14 13 17 17 C 1.38650 * 120.26815 * 0.02562 * 15 14 13 18 18 C 1.37973 * 120.25112 * 359.97201 * 17 15 14 19 19 C 1.39273 * 119.97573 * 359.72897 * 18 17 15 20 20 C 1.48348 * 120.13194 * 180.29479 * 19 18 17 21 21 N 1.34084 * 126.67761 * 179.97438 * 20 19 18 22 22 N 1.28981 * 107.26202 * 179.83447 * 21 20 19 23 23 N 1.28732 * 108.95537 * 0.43578 * 22 21 20 24 24 H 0.97007 * 125.33558 * 179.72026 * 23 22 21 25 25 N 1.28868 * 109.32628 * 359.72450 * 23 22 21 26 26 H 1.08995 * 109.47438 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47069 * 300.00816 * 1 2 3 28 28 H 1.09004 * 109.46658 * 60.00195 * 1 2 3 29 29 H 0.96995 * 120.00207 * 179.97438 * 7 6 4 30 30 H 0.97000 * 119.99954 * 95.00750 * 12 2 1 31 31 H 1.07999 * 119.99396 * 359.97438 * 14 13 12 32 32 H 1.08004 * 119.87597 * 179.97438 * 17 15 14 33 33 H 1.08000 * 120.01385 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7106 -1.2304 5 1 2.6533 -1.5887 -1.1311 6 6 1.7041 -0.2362 -2.4826 7 7 0.9480 0.8330 -2.6035 8 14 2.3331 -1.1125 -4.0077 9 1 1.8387 -2.5128 -4.0135 10 1 1.8422 -0.4097 -5.2203 11 1 3.8181 -1.1118 -4.0019 12 7 2.0182 -0.6906 1.1963 13 6 2.1514 0.0052 2.3975 14 6 1.8219 1.3513 2.4627 15 6 1.9544 2.0393 3.6556 16 9 1.6321 3.3499 3.7157 17 6 2.4166 1.3891 4.7896 18 6 2.7474 0.0507 4.7373 19 6 2.6121 -0.6534 3.5433 20 6 2.9606 -2.0942 3.4848 21 7 2.8809 -2.8945 2.4120 22 7 3.2769 -4.0661 2.7782 23 7 3.5885 -4.0309 4.0268 24 1 3.9118 -4.7839 4.5458 25 7 3.4036 -2.8384 4.4789 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 0.7173 1.1669 -3.4844 30 1 2.2490 -1.6317 1.1528 31 1 1.4618 1.8623 1.5820 32 1 2.5180 1.9325 5.7175 33 1 3.1067 -0.4520 5.6231 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001589788218.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:47 Heat of formation + Delta-G solvation = 107.075895 kcal Electronic energy + Delta-G solvation = -20958.554982 eV Core-core repulsion = 17550.871902 eV Total energy + Delta-G solvation = -3407.683080 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.103 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -48.56247 -44.25152 -39.04758 -35.66680 -34.23278 -33.25855 -32.75574 -29.98071 -29.91695 -27.50215 -25.26371 -24.70524 -23.87830 -22.32673 -21.28461 -20.15006 -19.11756 -17.68948 -16.95122 -16.53118 -16.27215 -15.62924 -15.23277 -14.84271 -14.71128 -14.06234 -13.72788 -13.48283 -12.97031 -12.79985 -12.53101 -12.02992 -11.86636 -11.79689 -11.23754 -11.18947 -11.13531 -11.00290 -10.88704 -10.68131 -10.51097 -10.26375 -10.12034 -9.50014 -9.07425 -8.50345 -8.31678 -6.76901 -6.15539 -4.23046 0.98095 1.37686 1.92091 2.38206 2.55771 3.27495 3.31560 3.34734 3.90076 4.10940 4.20852 4.38686 4.44176 4.71980 5.17054 5.19193 5.42894 5.50696 5.61470 5.83064 6.01188 6.27922 6.40896 6.51135 6.61290 6.62932 6.69704 6.90184 6.99317 7.16504 7.36678 7.67165 7.79839 8.04831 8.22034 8.34229 8.70277 8.92099 9.43795 10.90730 Molecular weight = 277.10amu Principal moments of inertia in cm(-1) A = 0.013560 B = 0.006736 C = 0.004691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2064.335713 B = 4155.655376 C = 5967.614738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.257 3.743 3 H 0.044 0.956 4 C -0.529 4.529 5 H 0.063 0.937 6 C 0.067 3.933 7 N -0.887 5.887 8 Si 0.902 3.098 9 H -0.275 1.275 10 H -0.286 1.286 11 H -0.276 1.276 12 N -0.692 5.692 13 C 0.302 3.698 14 C -0.245 4.245 15 C 0.171 3.829 16 F -0.141 7.141 17 C -0.247 4.247 18 C 0.004 3.996 19 C -0.150 4.150 20 C 0.251 3.749 21 N -0.283 5.283 22 N -0.047 5.047 23 N -0.234 5.234 24 H 0.472 0.528 25 N -0.313 5.313 26 H 0.031 0.969 27 H 0.015 0.985 28 H 0.093 0.907 29 H 0.265 0.735 30 H 0.412 0.588 31 H 0.147 0.853 32 H 0.130 0.870 33 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.505 -4.362 14.226 15.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.155 3.845 3 H 0.062 0.938 4 C -0.568 4.568 5 H 0.082 0.918 6 C -0.135 4.135 7 N -0.525 5.525 8 Si 0.729 3.271 9 H -0.201 1.201 10 H -0.211 1.211 11 H -0.201 1.201 12 N -0.316 5.316 13 C 0.182 3.818 14 C -0.269 4.269 15 C 0.149 3.851 16 F -0.120 7.120 17 C -0.269 4.269 18 C -0.017 4.017 19 C -0.161 4.161 20 C -0.027 4.027 21 N -0.156 5.156 22 N -0.043 5.043 23 N -0.079 5.079 24 H 0.325 0.675 25 N -0.165 5.165 26 H 0.050 0.950 27 H 0.034 0.966 28 H 0.111 0.889 29 H 0.075 0.925 30 H 0.256 0.744 31 H 0.165 0.835 32 H 0.148 0.852 33 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 3.391 -4.767 13.469 14.685 hybrid contribution 0.473 -0.635 -0.353 0.867 sum 3.865 -5.402 13.116 14.702 Atomic orbital electron populations 1.22189 0.98255 0.99889 1.00859 1.18936 0.91134 0.93640 0.80769 0.93806 1.21149 1.32375 1.13255 0.89981 0.91840 1.24848 0.94744 0.94941 0.99011 1.69857 1.36060 1.22486 1.24103 0.86490 0.79260 0.79713 0.81604 1.20051 1.21120 1.20136 1.46496 1.64069 1.14182 1.06832 1.17600 0.87738 0.90379 0.86091 1.20622 1.13716 0.93870 0.98681 1.17549 0.95801 0.77426 0.94293 1.91472 1.90060 1.33331 1.97101 1.20506 1.12683 0.95548 0.98115 1.20530 0.93071 0.92599 0.95539 1.16645 1.18083 0.86204 0.95127 1.23566 0.97863 0.96316 0.84924 1.75608 1.18933 0.96117 1.24962 1.78876 1.11827 1.17406 0.96144 1.47627 1.42900 1.09689 1.07711 0.67487 1.74882 1.22882 0.92340 1.26401 0.94959 0.96605 0.88885 0.92482 0.74419 0.83528 0.85238 0.84962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.63 9.20 37.16 0.34 -3.29 16 2 C 0.26 6.29 2.25 -69.08 -0.16 6.14 16 3 H 0.04 1.14 6.48 -51.93 -0.34 0.80 16 4 C -0.53 -14.16 8.72 -34.44 -0.30 -14.46 16 5 H 0.06 1.70 7.74 -52.49 -0.41 1.30 16 6 C 0.07 1.80 5.31 -17.82 -0.09 1.71 16 7 N -0.89 -24.28 11.33 55.43 0.63 -23.65 16 8 Si 0.90 20.87 29.54 -169.99 -5.02 15.85 16 9 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 10 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 12 N -0.69 -15.04 5.17 -53.11 -0.27 -15.32 16 13 C 0.30 5.83 6.64 -83.56 -0.55 5.27 16 14 C -0.24 -4.55 8.81 -39.36 -0.35 -4.89 16 15 C 0.17 2.79 7.29 -39.39 -0.29 2.50 16 16 F -0.14 -2.29 17.26 2.25 0.04 -2.25 16 17 C -0.25 -3.46 10.01 -39.53 -0.40 -3.86 16 18 C 0.00 0.05 9.69 -39.29 -0.38 -0.33 16 19 C -0.15 -2.55 5.89 -104.71 -0.62 -3.17 16 20 C 0.25 4.18 7.90 -156.29 -1.23 2.94 16 21 N -0.28 -5.05 9.45 32.14 0.30 -4.74 16 22 N -0.05 -0.69 13.47 60.35 0.81 0.12 16 23 N -0.23 -2.57 7.90 60.35 0.48 -2.10 16 24 H 0.47 2.60 8.96 -340.35 -3.05 -0.45 16 25 N -0.31 -4.24 12.08 32.16 0.39 -3.86 16 26 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.01 0.33 7.70 -51.93 -0.40 -0.07 16 28 H 0.09 2.38 6.08 -51.93 -0.32 2.07 16 29 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 30 H 0.41 8.98 5.09 -40.82 -0.21 8.77 16 31 H 0.15 2.90 6.10 -52.49 -0.32 2.58 16 32 H 0.13 1.47 8.06 -52.48 -0.42 1.05 16 33 H 0.13 1.54 7.88 -52.49 -0.41 1.13 16 LS Contribution 289.78 15.07 4.37 4.37 Total: -1.00 -29.19 289.78 -7.74 -36.93 By element: Atomic # 1 Polarization: 11.52 SS G_CDS: -5.43 Total: 6.09 kcal Atomic # 6 Polarization: -7.42 SS G_CDS: -4.02 Total: -11.44 kcal Atomic # 7 Polarization: -51.88 SS G_CDS: 2.34 Total: -49.55 kcal Atomic # 9 Polarization: -2.29 SS G_CDS: 0.04 Total: -2.25 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -29.19 -7.74 -36.93 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589788218.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.002 kcal (2) G-P(sol) polarization free energy of solvation -29.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.926 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds