Wall clock time and date at job start Mon Mar 30 2020 01:36:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.47011 * 2 1 4 4 C 1.50701 * 109.47000 * 239.99279 * 2 1 3 5 5 H 1.08002 * 119.99761 * 239.99828 * 4 2 1 6 6 C 1.37871 * 119.99694 * 60.28391 * 4 2 1 7 7 N 1.31514 * 120.00482 * 359.71466 * 6 4 2 8 8 Si 1.86801 * 119.99746 * 179.72062 * 6 4 2 9 9 H 1.48504 * 109.47266 * 60.00049 * 8 6 4 10 10 H 1.48504 * 109.46970 * 179.97438 * 8 6 4 11 11 H 1.48499 * 109.47383 * 299.99456 * 8 6 4 12 12 N 1.46499 * 109.46437 * 119.99604 * 2 1 3 13 13 C 1.39457 * 120.00169 * 274.99472 * 12 2 1 14 14 C 1.38739 * 120.12199 * 0.02562 * 13 12 2 15 15 C 1.38339 * 120.01608 * 179.97438 * 14 13 12 16 16 F 1.35102 * 119.86547 * 180.02562 * 15 14 13 17 17 C 1.38650 * 120.26815 * 0.02562 * 15 14 13 18 18 C 1.37973 * 120.25112 * 359.97201 * 17 15 14 19 19 C 1.39273 * 119.97573 * 359.72897 * 18 17 15 20 20 C 1.48348 * 120.13194 * 180.29479 * 19 18 17 21 21 N 1.34084 * 126.67761 * 179.97438 * 20 19 18 22 22 N 1.28981 * 107.26202 * 179.83447 * 21 20 19 23 23 N 1.28732 * 108.95537 * 0.43578 * 22 21 20 24 24 H 0.97007 * 125.33558 * 179.72026 * 23 22 21 25 25 N 1.28868 * 109.32628 * 359.72450 * 23 22 21 26 26 H 1.08995 * 109.47438 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47069 * 300.00816 * 1 2 3 28 28 H 1.09004 * 109.46658 * 60.00195 * 1 2 3 29 29 H 0.96995 * 120.00207 * 179.97438 * 7 6 4 30 30 H 0.97000 * 119.99954 * 95.00750 * 12 2 1 31 31 H 1.07999 * 119.99396 * 359.97438 * 14 13 12 32 32 H 1.08004 * 119.87597 * 179.97438 * 17 15 14 33 33 H 1.08000 * 120.01385 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7106 -1.2304 5 1 2.6533 -1.5887 -1.1311 6 6 1.7041 -0.2362 -2.4826 7 7 0.9480 0.8330 -2.6035 8 14 2.3331 -1.1125 -4.0077 9 1 1.8387 -2.5128 -4.0135 10 1 1.8422 -0.4097 -5.2203 11 1 3.8181 -1.1118 -4.0019 12 7 2.0182 -0.6906 1.1963 13 6 2.1514 0.0052 2.3975 14 6 1.8219 1.3513 2.4627 15 6 1.9544 2.0393 3.6556 16 9 1.6321 3.3499 3.7157 17 6 2.4166 1.3891 4.7896 18 6 2.7474 0.0507 4.7373 19 6 2.6121 -0.6534 3.5433 20 6 2.9606 -2.0942 3.4848 21 7 2.8809 -2.8945 2.4120 22 7 3.2769 -4.0661 2.7782 23 7 3.5885 -4.0309 4.0268 24 1 3.9118 -4.7839 4.5458 25 7 3.4036 -2.8384 4.4789 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 0.7173 1.1669 -3.4844 30 1 2.2490 -1.6317 1.1528 31 1 1.4618 1.8623 1.5820 32 1 2.5180 1.9325 5.7175 33 1 3.1067 -0.4520 5.6231 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001589788218.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:47 Heat of formation + Delta-G solvation = 88.244800 kcal Electronic energy + Delta-G solvation = -20959.371559 eV Core-core repulsion = 17550.871902 eV Total energy + Delta-G solvation = -3408.499657 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.103 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -49.86260 -45.39510 -40.41987 -37.30743 -35.44131 -34.57335 -34.43707 -31.65053 -31.21147 -29.04606 -27.28636 -25.88210 -25.12527 -23.80845 -22.55177 -21.84863 -20.25423 -19.18798 -18.19397 -18.07697 -17.59682 -17.20069 -16.56241 -16.52905 -16.16609 -15.59298 -15.12533 -14.94531 -14.46615 -14.16785 -14.03046 -13.58941 -13.40413 -13.05357 -12.99770 -12.89628 -12.76998 -12.37550 -12.33604 -12.22838 -12.14976 -11.77066 -11.73901 -11.13550 -10.93130 -10.50770 -9.61270 -8.28417 -8.16387 -6.33519 -0.24305 0.20661 0.62518 1.29435 1.42267 1.43530 1.50353 1.51604 2.36567 2.63265 2.80729 2.90220 3.11217 3.21210 3.38937 3.94535 4.23093 4.25322 4.39563 4.53647 4.68691 4.72708 4.96108 5.06177 5.07548 5.14445 5.30801 5.36060 5.43890 5.62189 5.70547 5.81236 5.96149 6.09802 6.48684 6.77304 7.06880 7.30427 7.39005 8.86536 Molecular weight = 277.10amu Principal moments of inertia in cm(-1) A = 0.013560 B = 0.006736 C = 0.004691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2064.335713 B = 4155.655376 C = 5967.614738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.268 3.732 3 H 0.018 0.982 4 C -0.549 4.549 5 H 0.055 0.945 6 C 0.023 3.977 7 N -0.911 5.911 8 Si 0.962 3.038 9 H -0.271 1.271 10 H -0.279 1.279 11 H -0.273 1.273 12 N -0.710 5.710 13 C 0.277 3.723 14 C -0.265 4.265 15 C 0.166 3.834 16 F -0.141 7.141 17 C -0.222 4.222 18 C 0.015 3.985 19 C -0.149 4.149 20 C 0.232 3.768 21 N -0.323 5.323 22 N -0.055 5.055 23 N -0.196 5.196 24 H 0.495 0.505 25 N -0.292 5.292 26 H 0.026 0.974 27 H 0.028 0.972 28 H 0.071 0.929 29 H 0.267 0.733 30 H 0.410 0.590 31 H 0.122 0.878 32 H 0.169 0.831 33 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.551 -5.321 16.675 18.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.164 3.836 3 H 0.036 0.964 4 C -0.587 4.587 5 H 0.074 0.926 6 C -0.177 4.177 7 N -0.549 5.549 8 Si 0.787 3.213 9 H -0.196 1.196 10 H -0.204 1.204 11 H -0.199 1.199 12 N -0.337 5.337 13 C 0.161 3.839 14 C -0.289 4.289 15 C 0.145 3.855 16 F -0.120 7.120 17 C -0.243 4.243 18 C -0.005 4.005 19 C -0.158 4.158 20 C -0.046 4.046 21 N -0.195 5.195 22 N -0.050 5.050 23 N -0.047 5.047 24 H 0.354 0.646 25 N -0.145 5.145 26 H 0.045 0.955 27 H 0.047 0.953 28 H 0.090 0.910 29 H 0.076 0.924 30 H 0.254 0.746 31 H 0.140 0.860 32 H 0.186 0.814 33 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 4.450 -5.734 15.969 17.541 hybrid contribution 0.216 -0.374 -0.878 0.979 sum 4.666 -6.109 15.091 16.936 Atomic orbital electron populations 1.21994 0.98225 0.99230 1.00310 1.18534 0.91091 0.92302 0.81643 0.96404 1.21436 1.32562 1.13277 0.91404 0.92638 1.25606 0.94880 0.95589 1.01650 1.69970 1.36742 1.23463 1.24709 0.85549 0.78670 0.78744 0.78323 1.19604 1.20375 1.19873 1.46142 1.66545 1.14044 1.06927 1.17801 0.89250 0.90659 0.86165 1.20523 1.15233 0.94097 0.99062 1.17677 0.96060 0.77443 0.94345 1.91472 1.90100 1.33338 1.97073 1.20925 1.09537 0.95445 0.98344 1.20921 0.91675 0.92491 0.95459 1.16881 1.17009 0.86793 0.95138 1.23568 0.99205 0.96481 0.85387 1.75576 1.20447 0.97170 1.26343 1.78824 1.12398 1.16526 0.97287 1.47715 1.40255 1.09797 1.06977 0.64573 1.74826 1.21742 0.92655 1.25273 0.95454 0.95341 0.91047 0.92369 0.74600 0.86050 0.81350 0.81391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.90 9.20 71.98 0.66 -6.24 16 2 C 0.27 13.79 2.25 44.25 0.10 13.89 16 3 H 0.02 1.01 6.48 -2.39 -0.02 1.00 16 4 C -0.55 -30.47 8.72 25.60 0.22 -30.25 16 5 H 0.06 3.09 7.74 -2.91 -0.02 3.07 16 6 C 0.02 1.27 5.31 84.65 0.45 1.72 16 7 N -0.91 -51.36 11.33 21.45 0.24 -51.12 16 8 Si 0.96 43.45 29.54 68.60 2.03 45.48 16 9 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 10 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 11 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 12 N -0.71 -32.13 5.17 -321.93 -1.66 -33.79 16 13 C 0.28 10.88 6.64 38.47 0.26 11.14 16 14 C -0.26 -10.11 8.81 22.41 0.20 -9.91 16 15 C 0.17 5.22 7.29 22.39 0.16 5.38 16 16 F -0.14 -4.43 17.26 44.97 0.78 -3.66 16 17 C -0.22 -5.41 10.01 22.31 0.22 -5.18 16 18 C 0.01 0.37 9.69 22.46 0.22 0.59 16 19 C -0.15 -4.84 5.89 -19.92 -0.12 -4.96 16 20 C 0.23 7.35 7.90 137.32 1.08 8.44 16 21 N -0.32 -11.40 9.45 -52.23 -0.49 -11.89 16 22 N -0.06 -1.55 13.47 37.02 0.50 -1.05 16 23 N -0.20 -3.75 7.90 37.02 0.29 -3.46 16 24 H 0.49 3.70 8.96 -347.52 -3.12 0.59 16 25 N -0.29 -7.01 12.08 -52.18 -0.63 -7.64 16 26 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 27 H 0.03 1.28 7.70 -2.39 -0.02 1.26 16 28 H 0.07 3.83 6.08 -2.38 -0.01 3.82 16 29 H 0.27 14.28 8.31 -92.71 -0.77 13.51 16 30 H 0.41 18.56 5.09 -92.71 -0.47 18.09 16 31 H 0.12 5.18 6.10 -2.91 -0.02 5.16 16 32 H 0.17 2.88 8.06 -2.91 -0.02 2.86 16 33 H 0.17 3.00 7.88 -2.91 -0.02 2.98 16 Total: -1.00 -65.17 289.78 2.12 -63.06 By element: Atomic # 1 Polarization: 21.83 SS G_CDS: -2.39 Total: 19.44 kcal Atomic # 6 Polarization: -18.83 SS G_CDS: 3.46 Total: -15.37 kcal Atomic # 7 Polarization: -107.20 SS G_CDS: -1.75 Total: -108.95 kcal Atomic # 9 Polarization: -4.43 SS G_CDS: 0.78 Total: -3.66 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.48 kcal Total: -65.17 2.12 -63.06 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589788218.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.303 kcal (2) G-P(sol) polarization free energy of solvation -65.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.058 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds