Wall clock time and date at job start Mon Mar 30 2020 02:00:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46893 * 111.00644 * 2 1 4 4 C 1.50706 * 109.47176 * 66.04281 * 3 2 1 5 5 H 1.07999 * 119.99515 * 0.02562 * 4 3 2 6 6 C 1.37870 * 120.00176 * 180.02562 * 4 3 2 7 7 N 1.31520 * 119.99883 * 0.02562 * 6 4 3 8 8 Si 1.86800 * 120.00043 * 180.02562 * 6 4 3 9 9 H 1.48494 * 109.47288 * 59.99994 * 8 6 4 10 10 H 1.48503 * 109.47086 * 179.97438 * 8 6 4 11 11 H 1.48505 * 109.46819 * 299.99648 * 8 6 4 12 12 C 1.39457 * 111.00053 * 236.04238 * 2 1 3 13 13 C 1.38742 * 120.11999 * 63.67830 * 12 2 1 14 14 C 1.38340 * 120.01396 * 179.76967 * 13 12 2 15 15 F 1.35108 * 119.86581 * 180.25713 * 14 13 12 16 16 C 1.38644 * 120.26802 * 0.51082 * 14 13 12 17 17 C 1.37978 * 120.25030 * 359.74911 * 16 14 13 18 18 C 1.39256 * 119.97636 * 359.97438 * 17 16 14 19 19 C 1.48354 * 120.13238 * 180.02562 * 18 17 16 20 20 N 1.34075 * 126.68343 * 179.66364 * 19 18 17 21 21 N 1.28979 * 107.26811 * 179.83117 * 20 19 18 22 22 N 1.28730 * 108.95296 * 0.43791 * 21 20 19 23 23 H 0.96999 * 125.33308 * 179.75647 * 22 21 20 24 24 N 1.28866 * 109.32580 * 359.71976 * 22 21 20 25 25 H 1.08997 * 109.47186 * 59.99756 * 1 2 3 26 26 H 1.08993 * 109.47654 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47132 * 300.00059 * 1 2 3 28 28 H 1.09001 * 109.46739 * 306.04690 * 3 2 1 29 29 H 1.09000 * 109.47767 * 186.04949 * 3 2 1 30 30 H 0.97004 * 119.99507 * 180.02562 * 7 6 4 31 31 H 1.07997 * 119.99257 * 0.02923 * 13 12 2 32 32 H 1.08001 * 119.87931 * 179.71833 * 16 14 13 33 33 H 1.07997 * 120.01087 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.6370 2.0471 1.2985 5 1 1.0746 1.5112 2.0487 6 6 2.0269 3.3494 1.5285 7 7 2.7114 4.0020 0.6145 8 14 1.5832 4.1867 3.1382 9 1 2.1758 3.4296 4.2699 10 1 2.1154 5.5731 3.1382 11 1 0.1060 4.2231 3.2864 12 6 1.9687 -0.7272 -1.0799 13 6 1.7215 -0.3046 -2.3780 14 6 2.2223 -1.0251 -3.4476 15 9 1.9841 -0.6079 -4.7104 16 6 2.9633 -2.1763 -3.2290 17 6 3.2113 -2.6096 -1.9427 18 6 2.7169 -1.8891 -0.8584 19 6 2.9820 -2.3515 0.5261 20 7 2.5776 -1.7600 1.6594 21 7 3.0102 -2.4765 2.6407 22 7 3.6698 -3.4765 2.1694 23 1 4.1014 -4.1641 2.7002 24 7 3.6660 -3.4211 0.8819 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.5612 1.9272 -0.8309 29 1 3.0798 1.3443 -0.1083 30 1 2.9860 4.9182 0.7766 31 1 1.1414 0.5893 -2.5535 32 1 3.3475 -2.7364 -4.0687 33 1 3.7893 -3.5067 -1.7769 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001591061741.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:51 Heat of formation + Delta-G solvation = 123.476862 kcal Electronic energy + Delta-G solvation = -21148.681284 eV Core-core repulsion = 17741.709404 eV Total energy + Delta-G solvation = -3406.971880 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.103 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -48.75649 -43.97637 -39.42958 -36.00421 -33.90010 -33.11522 -32.53744 -30.11186 -29.58644 -27.18554 -25.20918 -24.41235 -23.72148 -22.65695 -21.28976 -20.39513 -18.86607 -17.27437 -16.69149 -16.40864 -16.20755 -15.98043 -15.44713 -14.82727 -14.41846 -13.89710 -13.65092 -13.55434 -13.29049 -12.84139 -12.40044 -12.15676 -11.98148 -11.63357 -11.53169 -11.08349 -10.92041 -10.83583 -10.66331 -10.55608 -10.50492 -10.45336 -9.95209 -9.27106 -8.69505 -8.40662 -8.19081 -7.43296 -5.98822 -3.98977 0.85414 1.38072 1.60584 2.58317 2.71396 3.38266 3.41674 3.45873 3.83308 4.07811 4.34018 4.46246 4.60637 4.69968 5.05832 5.13570 5.37206 5.54779 5.58020 5.75251 5.91609 6.07098 6.13752 6.19484 6.22548 6.32994 6.56857 6.71650 6.75400 6.89509 7.24005 7.29261 7.86138 8.02356 8.14904 8.56438 8.67236 9.08042 9.64267 11.12232 Molecular weight = 277.10amu Principal moments of inertia in cm(-1) A = 0.013550 B = 0.007152 C = 0.005067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2065.881791 B = 3914.200943 C = 5524.113389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.047 3.953 2 N -0.496 5.496 3 C 0.203 3.797 4 C -0.499 4.499 5 H 0.068 0.932 6 C 0.054 3.946 7 N -0.901 5.901 8 Si 0.899 3.101 9 H -0.276 1.276 10 H -0.289 1.289 11 H -0.277 1.277 12 C 0.187 3.813 13 C -0.190 4.190 14 C 0.124 3.876 15 F -0.141 7.141 16 C -0.175 4.175 17 C -0.050 4.050 18 C -0.023 4.023 19 C 0.228 3.772 20 N -0.193 5.193 21 N -0.068 5.068 22 N -0.244 5.244 23 H 0.468 0.532 24 N -0.312 5.312 25 H 0.018 0.982 26 H 0.046 0.954 27 H 0.084 0.916 28 H -0.003 1.003 29 H 0.029 0.971 30 H 0.261 0.739 31 H 0.141 0.859 32 H 0.137 0.863 33 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.791 -15.521 -3.901 16.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 N -0.217 5.217 3 C 0.080 3.920 4 C -0.538 4.538 5 H 0.087 0.913 6 C -0.146 4.146 7 N -0.541 5.541 8 Si 0.727 3.273 9 H -0.201 1.201 10 H -0.215 1.215 11 H -0.203 1.203 12 C 0.089 3.911 13 C -0.211 4.211 14 C 0.104 3.896 15 F -0.119 7.119 16 C -0.194 4.194 17 C -0.071 4.071 18 C -0.028 4.028 19 C -0.052 4.052 20 N -0.065 5.065 21 N -0.064 5.064 22 N -0.087 5.087 23 H 0.320 0.680 24 N -0.165 5.165 25 H 0.036 0.964 26 H 0.064 0.936 27 H 0.103 0.897 28 H 0.015 0.985 29 H 0.048 0.952 30 H 0.071 0.929 31 H 0.159 0.841 32 H 0.155 0.845 33 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 0.965 -15.474 -2.834 15.761 hybrid contribution -0.022 0.655 -0.280 0.713 sum 0.943 -14.819 -3.114 15.172 Atomic orbital electron populations 1.22216 0.86427 0.99697 1.01573 1.59914 1.07723 1.18378 1.35687 1.19812 0.95408 0.79504 0.97267 1.21070 1.34737 0.96535 1.01428 0.91338 1.24969 0.95371 0.97348 0.96955 1.69958 1.38502 1.11504 1.34104 0.86543 0.78678 0.78172 0.83922 1.20125 1.21524 1.20260 1.18933 0.91563 0.91231 0.89346 1.21879 1.04593 1.02369 0.92262 1.17766 0.98396 0.94679 0.78797 1.91492 1.92701 1.89912 1.37822 1.20889 1.03137 0.97338 0.98000 1.20846 0.97123 0.98858 0.90288 1.17284 1.02746 0.96278 0.86457 1.23314 0.96783 0.89494 0.95602 1.76732 1.16633 1.18573 0.94591 1.79107 1.07394 0.95836 1.24067 1.47697 1.36407 1.21322 1.03291 0.67963 1.74794 1.23200 1.22797 0.95713 0.96352 0.93557 0.89722 0.98521 0.95248 0.92932 0.84083 0.84474 0.84166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.91 9.08 60.06 0.55 1.45 16 2 N -0.50 -10.63 2.92 -180.12 -0.53 -11.16 16 3 C 0.20 5.22 4.31 -4.98 -0.02 5.20 16 4 C -0.50 -13.90 8.51 -34.44 -0.29 -14.19 16 5 H 0.07 1.90 7.10 -52.49 -0.37 1.53 16 6 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 7 N -0.90 -26.78 13.29 55.43 0.74 -26.04 16 8 Si 0.90 21.87 29.54 -169.99 -5.02 16.85 16 9 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 10 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 11 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 12 C 0.19 3.52 4.67 -83.56 -0.39 3.13 16 13 C -0.19 -3.28 8.67 -39.36 -0.34 -3.62 16 14 C 0.12 1.88 7.29 -39.39 -0.29 1.59 16 15 F -0.14 -2.11 17.26 2.25 0.04 -2.08 16 16 C -0.17 -2.24 10.01 -39.53 -0.40 -2.64 16 17 C -0.05 -0.68 9.69 -39.30 -0.38 -1.06 16 18 C -0.02 -0.39 5.89 -104.71 -0.62 -1.01 16 19 C 0.23 3.99 7.90 -156.29 -1.23 2.75 16 20 N -0.19 -3.80 10.93 32.14 0.35 -3.45 16 21 N -0.07 -1.13 13.47 60.35 0.81 -0.32 16 22 N -0.24 -3.01 7.90 60.35 0.48 -2.53 16 23 H 0.47 3.20 8.96 -340.37 -3.05 0.15 16 24 N -0.31 -4.50 12.08 32.16 0.39 -4.11 16 25 H 0.02 0.33 7.46 -51.93 -0.39 -0.06 16 26 H 0.05 0.79 8.12 -51.93 -0.42 0.36 16 27 H 0.08 1.71 6.86 -51.93 -0.36 1.36 16 28 H 0.00 -0.08 7.48 -51.93 -0.39 -0.47 16 29 H 0.03 0.83 8.06 -51.93 -0.42 0.42 16 30 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 31 H 0.14 2.50 7.15 -52.49 -0.38 2.12 16 32 H 0.14 1.34 8.06 -52.49 -0.42 0.92 16 33 H 0.14 1.55 7.88 -52.49 -0.41 1.13 16 LS Contribution 295.62 15.07 4.45 4.45 Total: -1.00 -32.30 295.62 -7.54 -39.84 By element: Atomic # 1 Polarization: 1.21 SS G_CDS: -5.74 Total: -4.53 kcal Atomic # 6 Polarization: -3.42 SS G_CDS: -3.51 Total: -6.94 kcal Atomic # 7 Polarization: -49.84 SS G_CDS: 2.24 Total: -47.60 kcal Atomic # 9 Polarization: -2.11 SS G_CDS: 0.04 Total: -2.08 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -32.30 -7.54 -39.84 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001591061741.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.315 kcal (2) G-P(sol) polarization free energy of solvation -32.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 131.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.838 kcal (6) G-S(sol) free energy of system = (1) + (5) 123.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds