Wall clock time and date at job start Mon Mar 30 2020 02:00:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46893 * 111.00644 * 2 1 4 4 C 1.50706 * 109.47176 * 66.04281 * 3 2 1 5 5 H 1.07999 * 119.99515 * 0.02562 * 4 3 2 6 6 C 1.37870 * 120.00176 * 180.02562 * 4 3 2 7 7 N 1.31520 * 119.99883 * 0.02562 * 6 4 3 8 8 Si 1.86800 * 120.00043 * 180.02562 * 6 4 3 9 9 H 1.48494 * 109.47288 * 59.99994 * 8 6 4 10 10 H 1.48503 * 109.47086 * 179.97438 * 8 6 4 11 11 H 1.48505 * 109.46819 * 299.99648 * 8 6 4 12 12 C 1.39457 * 111.00053 * 236.04238 * 2 1 3 13 13 C 1.38742 * 120.11999 * 63.67830 * 12 2 1 14 14 C 1.38340 * 120.01396 * 179.76967 * 13 12 2 15 15 F 1.35108 * 119.86581 * 180.25713 * 14 13 12 16 16 C 1.38644 * 120.26802 * 0.51082 * 14 13 12 17 17 C 1.37978 * 120.25030 * 359.74911 * 16 14 13 18 18 C 1.39256 * 119.97636 * 359.97438 * 17 16 14 19 19 C 1.48354 * 120.13238 * 180.02562 * 18 17 16 20 20 N 1.34075 * 126.68343 * 179.66364 * 19 18 17 21 21 N 1.28979 * 107.26811 * 179.83117 * 20 19 18 22 22 N 1.28730 * 108.95296 * 0.43791 * 21 20 19 23 23 H 0.96999 * 125.33308 * 179.75647 * 22 21 20 24 24 N 1.28866 * 109.32580 * 359.71976 * 22 21 20 25 25 H 1.08997 * 109.47186 * 59.99756 * 1 2 3 26 26 H 1.08993 * 109.47654 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47132 * 300.00059 * 1 2 3 28 28 H 1.09001 * 109.46739 * 306.04690 * 3 2 1 29 29 H 1.09000 * 109.47767 * 186.04949 * 3 2 1 30 30 H 0.97004 * 119.99507 * 180.02562 * 7 6 4 31 31 H 1.07997 * 119.99257 * 0.02923 * 13 12 2 32 32 H 1.08001 * 119.87931 * 179.71833 * 16 14 13 33 33 H 1.07997 * 120.01087 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.6370 2.0471 1.2985 5 1 1.0746 1.5112 2.0487 6 6 2.0269 3.3494 1.5285 7 7 2.7114 4.0020 0.6145 8 14 1.5832 4.1867 3.1382 9 1 2.1758 3.4296 4.2699 10 1 2.1154 5.5731 3.1382 11 1 0.1060 4.2231 3.2864 12 6 1.9687 -0.7272 -1.0799 13 6 1.7215 -0.3046 -2.3780 14 6 2.2223 -1.0251 -3.4476 15 9 1.9841 -0.6079 -4.7104 16 6 2.9633 -2.1763 -3.2290 17 6 3.2113 -2.6096 -1.9427 18 6 2.7169 -1.8891 -0.8584 19 6 2.9820 -2.3515 0.5261 20 7 2.5776 -1.7600 1.6594 21 7 3.0102 -2.4765 2.6407 22 7 3.6698 -3.4765 2.1694 23 1 4.1014 -4.1641 2.7002 24 7 3.6660 -3.4211 0.8819 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.5612 1.9272 -0.8309 29 1 3.0798 1.3443 -0.1083 30 1 2.9860 4.9182 0.7766 31 1 1.1414 0.5893 -2.5535 32 1 3.3475 -2.7364 -4.0687 33 1 3.7893 -3.5067 -1.7769 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001591061741.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:51 Heat of formation + Delta-G solvation = 101.905432 kcal Electronic energy + Delta-G solvation = -21149.616692 eV Core-core repulsion = 17741.709404 eV Total energy + Delta-G solvation = -3407.907288 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.103 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -49.95640 -45.20316 -40.78180 -37.53000 -35.15257 -34.64078 -34.34624 -31.38954 -30.95300 -29.13050 -26.84279 -25.64574 -25.08118 -24.30064 -22.60439 -21.88923 -20.04157 -18.76462 -18.15414 -17.90298 -17.54561 -17.35122 -16.77617 -16.56110 -15.98213 -15.45695 -15.18521 -14.82346 -14.75771 -14.12140 -14.01367 -13.69169 -13.49260 -13.18883 -12.84432 -12.81930 -12.72959 -12.40994 -12.23381 -12.09893 -11.95811 -11.80130 -11.66341 -11.34158 -10.58593 -9.96030 -9.43691 -9.13370 -8.16956 -6.24938 -0.37333 0.15750 0.37992 1.42228 1.42590 1.45999 1.53520 1.61920 2.42648 2.59664 2.85353 3.06659 3.16773 3.26153 3.37835 3.84608 4.02427 4.22449 4.38345 4.41545 4.60273 4.64544 4.74622 4.91432 5.02488 5.05567 5.08062 5.17991 5.25573 5.39074 5.69725 5.76554 5.82185 6.10750 6.21189 6.75754 6.89047 7.42441 7.43224 8.94124 Molecular weight = 277.10amu Principal moments of inertia in cm(-1) A = 0.013550 B = 0.007152 C = 0.005067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2065.881791 B = 3914.200943 C = 5524.113389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.052 3.948 2 N -0.497 5.497 3 C 0.226 3.774 4 C -0.511 4.511 5 H 0.065 0.935 6 C 0.002 3.998 7 N -0.936 5.936 8 Si 0.966 3.034 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.265 1.265 12 C 0.152 3.848 13 C -0.202 4.202 14 C 0.121 3.879 15 F -0.140 7.140 16 C -0.148 4.148 17 C -0.035 4.035 18 C -0.033 4.033 19 C 0.210 3.790 20 N -0.245 5.245 21 N -0.082 5.082 22 N -0.207 5.207 23 H 0.491 0.509 24 N -0.291 5.291 25 H 0.020 0.980 26 H 0.069 0.931 27 H 0.068 0.932 28 H -0.027 1.027 29 H -0.007 1.007 30 H 0.263 0.737 31 H 0.123 0.877 32 H 0.181 0.819 33 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.453 -17.867 -4.027 18.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 N -0.218 5.218 3 C 0.102 3.898 4 C -0.549 4.549 5 H 0.083 0.917 6 C -0.196 4.196 7 N -0.577 5.577 8 Si 0.791 3.209 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.190 1.190 12 C 0.054 3.946 13 C -0.224 4.224 14 C 0.100 3.900 15 F -0.118 7.118 16 C -0.167 4.167 17 C -0.056 4.056 18 C -0.037 4.037 19 C -0.069 4.069 20 N -0.116 5.116 21 N -0.077 5.077 22 N -0.057 5.057 23 H 0.349 0.651 24 N -0.145 5.145 25 H 0.038 0.962 26 H 0.087 0.913 27 H 0.086 0.914 28 H -0.010 1.010 29 H 0.011 0.989 30 H 0.072 0.928 31 H 0.141 0.859 32 H 0.198 0.802 33 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 1.617 -17.852 -2.947 18.166 hybrid contribution -0.150 1.204 -0.298 1.249 sum 1.467 -16.648 -3.245 17.025 Atomic orbital electron populations 1.22171 0.85598 1.00880 1.00783 1.59693 1.08602 1.15674 1.37803 1.19310 0.92978 0.82008 0.95546 1.21358 1.34470 0.96981 1.02078 0.91664 1.25851 0.95193 0.98070 1.00469 1.70088 1.39630 1.11845 1.36134 0.85483 0.78955 0.77029 0.79438 1.19777 1.20950 1.18994 1.18965 0.94010 0.92616 0.88960 1.21720 1.05430 1.02442 0.92776 1.17845 0.98685 0.95286 0.78156 1.91496 1.92753 1.90067 1.37529 1.21321 1.00527 0.95727 0.99094 1.21200 0.95996 0.99061 0.89294 1.17496 1.02623 0.96110 0.87487 1.23466 0.97658 0.90246 0.95548 1.76700 1.18691 1.20434 0.95821 1.79023 1.08289 0.96708 1.23668 1.47761 1.34317 1.20567 1.03016 0.65091 1.74747 1.22096 1.21411 0.96214 0.96155 0.91273 0.91365 1.00988 0.98883 0.92833 0.85895 0.80171 0.80790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 2.08 9.08 127.69 1.16 3.24 16 2 N -0.50 -22.22 2.92 -723.79 -2.11 -24.33 16 3 C 0.23 12.30 4.31 85.56 0.37 12.67 16 4 C -0.51 -29.51 8.51 25.60 0.22 -29.29 16 5 H 0.07 3.74 7.10 -2.91 -0.02 3.72 16 6 C 0.00 0.10 5.46 84.65 0.46 0.56 16 7 N -0.94 -57.39 13.29 21.45 0.28 -57.11 16 8 Si 0.97 45.57 29.54 68.60 2.03 47.59 16 9 H -0.27 -12.64 7.11 99.48 0.71 -11.93 16 10 H -0.28 -13.05 7.11 99.48 0.71 -12.35 16 11 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 12 C 0.15 5.83 4.67 38.47 0.18 6.01 16 13 C -0.20 -7.17 8.67 22.41 0.19 -6.97 16 14 C 0.12 3.49 7.29 22.39 0.16 3.65 16 15 F -0.14 -4.00 17.26 44.97 0.78 -3.22 16 16 C -0.15 -3.25 10.01 22.31 0.22 -3.02 16 17 C -0.04 -0.83 9.69 22.45 0.22 -0.61 16 18 C -0.03 -1.07 5.89 -19.92 -0.12 -1.19 16 19 C 0.21 7.15 7.90 137.33 1.08 8.23 16 20 N -0.25 -9.68 10.93 -52.23 -0.57 -10.25 16 21 N -0.08 -2.63 13.47 37.02 0.50 -2.13 16 22 N -0.21 -4.64 7.90 37.02 0.29 -4.34 16 23 H 0.49 5.26 8.96 -347.54 -3.12 2.14 16 24 N -0.29 -7.64 12.08 -52.17 -0.63 -8.27 16 25 H 0.02 0.77 7.46 -2.39 -0.02 0.76 16 26 H 0.07 2.39 8.12 -2.39 -0.02 2.37 16 27 H 0.07 2.88 6.86 -2.39 -0.02 2.87 16 28 H -0.03 -1.59 7.48 -2.39 -0.02 -1.61 16 29 H -0.01 -0.42 8.06 -2.39 -0.02 -0.44 16 30 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 31 H 0.12 4.67 7.15 -2.91 -0.02 4.65 16 32 H 0.18 2.47 8.06 -2.91 -0.02 2.45 16 33 H 0.17 2.95 7.88 -2.91 -0.02 2.92 16 Total: -1.00 -72.76 295.62 2.77 -69.98 By element: Atomic # 1 Polarization: 0.75 SS G_CDS: -1.94 Total: -1.19 kcal Atomic # 6 Polarization: -10.88 SS G_CDS: 4.15 Total: -6.73 kcal Atomic # 7 Polarization: -104.19 SS G_CDS: -2.24 Total: -106.43 kcal Atomic # 9 Polarization: -4.00 SS G_CDS: 0.78 Total: -3.22 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 2.03 Total: 47.59 kcal Total: -72.76 2.77 -69.98 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001591061741.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.887 kcal (2) G-P(sol) polarization free energy of solvation -72.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.982 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds