Wall clock time and date at job start Mon Mar 30 2020 01:36:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50699 * 109.47078 * 119.99793 * 2 1 3 5 5 H 1.08003 * 120.00271 * 120.00264 * 4 2 1 6 6 C 1.37879 * 120.00161 * 299.99763 * 4 2 1 7 7 N 1.31516 * 120.00079 * 179.97438 * 6 4 2 8 8 Si 1.86795 * 119.99984 * 0.02562 * 6 4 2 9 9 H 1.48498 * 109.47308 * 89.99475 * 8 6 4 10 10 H 1.48501 * 109.47369 * 209.99550 * 8 6 4 11 11 H 1.48502 * 109.47235 * 329.99718 * 8 6 4 12 12 C 1.50697 * 109.47466 * 239.99773 * 2 1 3 13 13 O 1.21277 * 120.00304 * 240.00314 * 12 2 1 14 14 N 1.34778 * 119.99637 * 59.99942 * 12 2 1 15 15 C 1.46505 * 119.99943 * 180.02562 * 14 12 2 16 16 H 1.09007 * 109.46886 * 325.00252 * 15 14 12 17 17 C 1.50701 * 109.47076 * 84.99704 * 15 14 12 18 18 O 1.20826 * 119.99849 * 0.02562 * 17 15 14 19 19 O 1.34228 * 120.00019 * 180.02562 * 17 15 14 20 20 C 1.50699 * 109.47289 * 205.00100 * 15 14 12 21 21 C 1.38237 * 119.99844 * 319.72730 * 20 15 14 22 22 C 1.38236 * 119.99809 * 179.78821 * 21 20 15 23 23 C 1.38237 * 120.00016 * 0.43941 * 22 21 20 24 24 C 1.38240 * 119.99962 * 359.81287 * 23 22 21 25 25 C 1.38231 * 119.99717 * 359.97438 * 24 23 22 26 26 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 28 28 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 29 29 H 0.96999 * 119.99874 * 180.02562 * 7 6 4 30 30 H 0.97000 * 120.00446 * 0.02562 * 14 12 2 31 31 H 0.96699 * 116.99877 * 180.02562 * 19 17 15 32 32 H 1.08001 * 119.99815 * 359.97438 * 21 20 15 33 33 H 1.07998 * 120.00129 * 180.27377 * 22 21 20 34 34 H 1.07995 * 120.00098 * 179.83061 * 23 22 21 35 35 H 1.07998 * 119.99938 * 180.02562 * 24 23 22 36 36 H 1.08007 * 120.00187 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1315 6 6 1.6993 -0.2393 2.4828 7 7 2.1372 -0.8595 3.5566 8 14 0.6248 1.2791 2.6541 9 1 -0.8028 0.8728 2.6997 10 1 0.9759 1.9952 3.9068 11 1 0.8471 2.1766 1.4920 12 6 2.0324 -0.7104 -1.2304 13 8 2.7296 -1.6965 -1.1191 14 7 1.7068 -0.2500 -2.4545 15 6 2.1947 -0.9409 -3.6507 16 1 3.1939 -1.3335 -3.4614 17 6 1.2644 -2.0772 -3.9891 18 8 0.2932 -2.2879 -3.3018 19 8 1.5147 -2.8552 -5.0539 20 6 2.2456 0.0273 -4.8044 21 6 1.2303 0.9491 -4.9785 22 6 1.2792 1.8401 -6.0343 23 6 2.3389 1.8032 -6.9212 24 6 3.3516 0.8780 -6.7501 25 6 3.3049 -0.0100 -5.6918 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 0.5139 0.8900 29 1 1.9026 -0.5283 4.4376 30 1 1.1494 0.5389 -2.5436 31 1 0.8895 -3.5712 -5.2311 32 1 0.4004 0.9751 -4.2879 33 1 0.4882 2.5631 -6.1677 34 1 2.3757 2.4975 -7.7476 35 1 4.1797 0.8495 -7.4428 36 1 4.0959 -0.7333 -5.5583 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592210457.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:27 Heat of formation + Delta-G solvation = -121.234064 kcal Electronic energy + Delta-G solvation = -21424.283091 eV Core-core repulsion = 18065.574552 eV Total energy + Delta-G solvation = -3358.708540 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.97640 -40.42910 -39.92563 -37.24378 -36.09634 -35.84583 -33.55241 -32.21269 -31.75753 -28.57339 -27.13822 -24.98742 -23.65247 -23.54684 -21.90452 -21.16263 -19.27613 -18.83135 -18.51883 -18.08107 -17.33622 -17.10873 -16.72450 -16.34068 -15.86040 -15.75961 -15.34302 -15.03275 -14.69986 -14.26615 -14.23159 -14.07957 -13.75275 -13.52302 -13.43925 -12.86153 -12.64076 -12.58074 -12.22494 -12.17555 -11.95348 -11.93708 -11.47592 -11.25527 -10.81551 -10.65086 -10.40469 -9.84546 -9.77013 -8.27637 -6.35926 0.25632 0.48092 1.06764 1.33751 1.39786 1.48200 1.51314 1.93152 2.34241 2.36617 2.93099 3.05779 3.34494 3.78927 4.03402 4.08484 4.21412 4.23493 4.32680 4.38368 4.56084 4.60059 4.65901 4.74871 4.94002 4.96976 5.11205 5.19797 5.41398 5.47439 5.48974 5.52947 5.56303 5.61005 6.05290 6.21279 6.51096 6.78632 6.86768 7.21732 7.33839 8.90031 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.023134 B = 0.004967 C = 0.004556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.061708 B = 5635.336153 C = 6144.923143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.006 4.006 3 H 0.078 0.922 4 C -0.522 4.522 5 H 0.030 0.970 6 C 0.007 3.993 7 N -0.952 5.952 8 Si 0.959 3.041 9 H -0.263 1.263 10 H -0.297 1.297 11 H -0.227 1.227 12 C 0.536 3.464 13 O -0.575 6.575 14 N -0.704 5.704 15 C 0.199 3.801 16 H 0.122 0.878 17 C 0.473 3.527 18 O -0.536 6.536 19 O -0.501 6.501 20 C -0.106 4.106 21 C -0.121 4.121 22 C -0.118 4.118 23 C -0.110 4.110 24 C -0.119 4.119 25 C -0.101 4.101 26 H 0.039 0.961 27 H 0.081 0.919 28 H 0.050 0.950 29 H 0.268 0.732 30 H 0.417 0.583 31 H 0.427 0.573 32 H 0.125 0.875 33 H 0.148 0.852 34 H 0.152 0.848 35 H 0.151 0.849 36 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.886 8.748 -25.942 27.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.027 4.027 3 H 0.095 0.905 4 C -0.560 4.560 5 H 0.048 0.952 6 C -0.189 4.189 7 N -0.591 5.591 8 Si 0.783 3.217 9 H -0.189 1.189 10 H -0.225 1.225 11 H -0.150 1.150 12 C 0.326 3.674 13 O -0.453 6.453 14 N -0.359 5.359 15 C 0.091 3.909 16 H 0.139 0.861 17 C 0.314 3.686 18 O -0.425 6.425 19 O -0.314 6.314 20 C -0.107 4.107 21 C -0.139 4.139 22 C -0.136 4.136 23 C -0.128 4.128 24 C -0.136 4.136 25 C -0.119 4.119 26 H 0.058 0.942 27 H 0.100 0.900 28 H 0.068 0.932 29 H 0.077 0.923 30 H 0.256 0.744 31 H 0.288 0.712 32 H 0.143 0.857 33 H 0.166 0.834 34 H 0.170 0.830 35 H 0.169 0.831 36 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -2.371 8.270 -25.419 26.835 hybrid contribution -0.894 -0.470 0.879 1.339 sum -3.265 7.801 -24.539 25.956 Atomic orbital electron populations 1.22002 0.94641 1.01366 1.01475 1.19269 0.95199 0.97836 0.90418 0.90454 1.21054 1.31814 1.12907 0.90272 0.95179 1.26028 0.97366 1.00799 0.94729 1.70074 1.47560 1.42782 0.98734 0.85719 0.78628 0.79043 0.78306 1.18923 1.22464 1.14962 1.21193 0.77810 0.83401 0.85015 1.90568 1.39455 1.28116 1.87115 1.45801 1.54994 1.31844 1.03285 1.19102 0.97087 0.89187 0.85496 0.86079 1.24084 0.84580 0.82763 0.77218 1.90735 1.30484 1.70607 1.50701 1.84464 1.56981 1.44668 1.45287 1.19310 0.98132 0.97558 0.95663 1.21147 0.97910 0.95705 0.99184 1.21421 0.99510 0.98619 0.94064 1.21638 0.93418 0.98377 0.99388 1.21474 0.99817 0.94868 0.97470 1.21204 0.97041 0.99341 0.94336 0.94199 0.89980 0.93185 0.92334 0.74414 0.71171 0.85682 0.83402 0.83040 0.83146 0.84728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.62 8.57 71.98 0.62 -5.00 16 2 C -0.01 -0.27 2.23 -12.29 -0.03 -0.30 16 3 H 0.08 3.31 7.20 -2.39 -0.02 3.29 16 4 C -0.52 -31.92 8.96 25.60 0.23 -31.69 16 5 H 0.03 2.16 7.00 -2.91 -0.02 2.14 16 6 C 0.01 0.44 5.45 84.65 0.46 0.90 16 7 N -0.95 -61.91 13.96 21.45 0.30 -61.61 16 8 Si 0.96 43.60 24.37 68.60 1.67 45.27 16 9 H -0.26 -11.34 6.87 99.48 0.68 -10.66 16 10 H -0.30 -13.52 7.11 99.48 0.71 -12.81 16 11 H -0.23 -8.81 6.53 99.48 0.65 -8.16 16 12 C 0.54 24.36 6.98 87.66 0.61 24.97 16 13 O -0.57 -31.52 15.12 -3.02 -0.05 -31.56 16 14 N -0.70 -23.33 4.45 -449.68 -2.00 -25.33 16 15 C 0.20 5.79 2.68 43.50 0.12 5.91 16 16 H 0.12 3.78 7.44 -2.38 -0.02 3.76 16 17 C 0.47 14.48 7.64 71.24 0.54 15.02 16 18 O -0.54 -20.46 17.08 21.96 0.38 -20.09 16 19 O -0.50 -11.20 13.34 -51.40 -0.69 -11.88 16 20 C -0.11 -2.31 4.88 -19.87 -0.10 -2.41 16 21 C -0.12 -2.27 9.05 22.27 0.20 -2.07 16 22 C -0.12 -1.67 10.05 22.27 0.22 -1.44 16 23 C -0.11 -1.34 10.05 22.27 0.22 -1.12 16 24 C -0.12 -1.61 10.05 22.27 0.22 -1.38 16 25 C -0.10 -1.83 9.67 22.27 0.22 -1.61 16 26 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 27 H 0.08 2.53 7.56 -2.39 -0.02 2.51 16 28 H 0.05 2.03 3.27 -2.38 -0.01 2.03 16 29 H 0.27 16.10 8.31 -92.71 -0.77 15.33 16 30 H 0.42 11.07 6.30 -92.71 -0.58 10.49 16 31 H 0.43 5.86 9.10 -74.06 -0.67 5.19 16 32 H 0.13 2.22 6.93 -2.91 -0.02 2.20 16 33 H 0.15 1.36 8.06 -2.91 -0.02 1.34 16 34 H 0.15 0.97 8.06 -2.91 -0.02 0.95 16 35 H 0.15 1.26 8.06 -2.91 -0.02 1.23 16 36 H 0.13 2.19 8.04 -2.91 -0.02 2.17 16 Total: -1.00 -85.64 308.53 2.95 -82.69 By element: Atomic # 1 Polarization: 22.94 SS G_CDS: -0.20 Total: 22.74 kcal Atomic # 6 Polarization: -3.76 SS G_CDS: 3.54 Total: -0.22 kcal Atomic # 7 Polarization: -85.25 SS G_CDS: -1.70 Total: -86.95 kcal Atomic # 8 Polarization: -63.17 SS G_CDS: -0.36 Total: -63.53 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 1.67 Total: 45.27 kcal Total: -85.64 2.95 -82.69 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592210457.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.543 kcal (2) G-P(sol) polarization free energy of solvation -85.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds