Wall clock time and date at job start Mon Mar 30 2020 01:36:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47821 * 2 1 4 4 C 1.50700 * 109.47037 * 240.00012 * 2 1 3 5 5 H 1.08000 * 120.00144 * 240.00002 * 4 2 1 6 6 C 1.37883 * 120.00073 * 60.00187 * 4 2 1 7 7 N 1.31512 * 119.99774 * 0.02562 * 6 4 2 8 8 Si 1.86794 * 120.00265 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.47176 * 59.99549 * 8 6 4 10 10 H 1.48495 * 109.47292 * 179.97438 * 8 6 4 11 11 H 1.48502 * 109.47216 * 300.00390 * 8 6 4 12 12 C 1.50703 * 109.47013 * 120.00448 * 2 1 3 13 13 O 1.21277 * 120.00066 * 120.00175 * 12 2 1 14 14 N 1.34779 * 119.99831 * 299.99323 * 12 2 1 15 15 C 1.46493 * 119.99897 * 179.97438 * 14 12 2 16 16 H 1.08997 * 109.47261 * 325.00633 * 15 14 12 17 17 C 1.50706 * 109.47153 * 85.00552 * 15 14 12 18 18 O 1.20825 * 119.99859 * 359.97438 * 17 15 14 19 19 O 1.34224 * 120.00295 * 180.02562 * 17 15 14 20 20 C 1.50696 * 109.47208 * 205.00173 * 15 14 12 21 21 C 1.38233 * 120.00250 * 319.73248 * 20 15 14 22 22 C 1.38235 * 120.00171 * 179.81029 * 21 20 15 23 23 C 1.38231 * 119.99931 * 0.39240 * 22 21 20 24 24 C 1.38237 * 119.99987 * 359.85925 * 23 22 21 25 25 C 1.38230 * 119.99824 * 359.95291 * 24 23 22 26 26 H 1.08998 * 109.47108 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47068 * 300.00126 * 1 2 3 28 28 H 1.09005 * 109.46721 * 59.99569 * 1 2 3 29 29 H 0.96995 * 120.00275 * 179.97438 * 7 6 4 30 30 H 0.97001 * 119.99623 * 0.02562 * 14 12 2 31 31 H 0.96700 * 117.00196 * 179.97438 * 19 17 15 32 32 H 1.08001 * 119.99534 * 359.97438 * 21 20 15 33 33 H 1.07997 * 120.00136 * 180.23226 * 22 21 20 34 34 H 1.08006 * 119.99888 * 179.83730 * 23 22 21 35 35 H 1.07997 * 119.99926 * 179.97438 * 24 23 22 36 36 H 1.08007 * 119.99686 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2393 -2.4828 7 7 0.9436 0.8303 -2.6034 8 14 2.3212 -1.1203 -4.0080 9 1 1.8257 -2.5202 -4.0078 10 1 1.8259 -0.4205 -5.2205 11 1 3.8062 -1.1210 -4.0082 12 6 2.0323 -0.7105 1.2304 13 8 2.7296 -1.6966 1.1191 14 7 1.7068 -0.2500 2.4546 15 6 2.1946 -0.9410 3.6507 16 1 2.2308 -2.0138 3.4611 17 6 3.5763 -0.4438 3.9896 18 8 4.0999 0.4007 3.3023 19 8 4.2256 -0.9399 5.0545 20 6 1.2648 -0.6658 4.8042 21 6 0.7351 0.5991 4.9784 22 6 -0.1210 0.8506 6.0342 23 6 -0.4409 -0.1608 6.9206 24 6 0.0929 -1.4244 6.7494 25 6 0.9458 -1.6768 5.6913 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 0.7096 1.1619 -3.4843 30 1 1.1489 0.5385 2.5435 31 1 5.1096 -0.5903 5.2317 32 1 0.9880 1.3902 4.2880 33 1 -0.5378 1.8378 6.1682 34 1 -1.1077 0.0364 7.7470 35 1 -0.1568 -2.2144 7.4421 36 1 1.3632 -2.6640 5.5578 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592210458.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:29 Heat of formation + Delta-G solvation = -103.084969 kcal Electronic energy + Delta-G solvation = -21328.584482 eV Core-core repulsion = 17970.662946 eV Total energy + Delta-G solvation = -3357.921536 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.67582 -39.13613 -38.54914 -36.00287 -34.65588 -33.74144 -31.57739 -31.03980 -30.15714 -27.27970 -25.11616 -23.17621 -22.75379 -22.37438 -20.72566 -19.47373 -18.08503 -17.25457 -16.85411 -16.24903 -16.01966 -15.61221 -15.36605 -14.88263 -14.51201 -14.30166 -13.90347 -13.55031 -13.21199 -13.04719 -12.77366 -12.50945 -12.36912 -11.55521 -11.48126 -11.32511 -11.16600 -10.98591 -10.75202 -10.67918 -10.64336 -10.24302 -9.95240 -9.09680 -9.07591 -8.96983 -8.77052 -8.64840 -8.32453 -6.00856 -4.03948 1.07501 1.23160 2.33490 2.87808 3.38647 3.40676 3.44994 3.51348 3.72671 3.99570 4.39517 4.49608 4.69913 4.82014 4.94702 5.20915 5.28752 5.32624 5.37711 5.45719 5.72506 5.85130 6.13884 6.25400 6.32569 6.34672 6.56361 6.62258 6.76709 6.79339 6.83657 6.93712 7.48093 7.76074 7.95102 8.00414 8.10531 8.38029 9.03643 9.11942 9.60977 11.06864 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.025039 B = 0.004622 C = 0.004227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.990175 B = 6056.791813 C = 6622.330075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.033 3.967 3 H 0.056 0.944 4 C -0.501 4.501 5 H 0.074 0.926 6 C 0.059 3.941 7 N -0.896 5.896 8 Si 0.902 3.098 9 H -0.276 1.276 10 H -0.288 1.288 11 H -0.276 1.276 12 C 0.529 3.471 13 O -0.540 6.540 14 N -0.723 5.723 15 C 0.200 3.800 16 H 0.130 0.870 17 C 0.468 3.532 18 O -0.494 6.494 19 O -0.516 6.516 20 C -0.089 4.089 21 C -0.107 4.107 22 C -0.117 4.117 23 C -0.115 4.115 24 C -0.119 4.119 25 C -0.091 4.091 26 H 0.032 0.968 27 H 0.012 0.988 28 H 0.094 0.906 29 H 0.261 0.739 30 H 0.403 0.597 31 H 0.406 0.594 32 H 0.125 0.875 33 H 0.125 0.875 34 H 0.123 0.877 35 H 0.125 0.875 36 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.733 -0.679 19.949 20.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.012 3.988 3 H 0.074 0.926 4 C -0.540 4.540 5 H 0.092 0.908 6 C -0.142 4.142 7 N -0.536 5.536 8 Si 0.730 3.270 9 H -0.202 1.202 10 H -0.214 1.214 11 H -0.202 1.202 12 C 0.319 3.681 13 O -0.415 6.415 14 N -0.379 5.379 15 C 0.091 3.909 16 H 0.147 0.853 17 C 0.306 3.694 18 O -0.380 6.380 19 O -0.328 6.328 20 C -0.090 4.090 21 C -0.126 4.126 22 C -0.135 4.135 23 C -0.133 4.133 24 C -0.137 4.137 25 C -0.110 4.110 26 H 0.051 0.949 27 H 0.031 0.969 28 H 0.113 0.887 29 H 0.071 0.929 30 H 0.239 0.761 31 H 0.264 0.736 32 H 0.143 0.857 33 H 0.143 0.857 34 H 0.141 0.859 35 H 0.143 0.857 36 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -2.538 -1.205 19.390 19.592 hybrid contribution 0.725 0.281 -0.633 1.003 sum -1.813 -0.924 18.756 18.867 Atomic orbital electron populations 1.21756 0.96343 0.99939 1.01044 1.18879 0.94217 0.96999 0.88747 0.92627 1.21084 1.31102 1.12853 0.88929 0.90831 1.24940 0.95095 0.95068 0.99084 1.69856 1.37057 1.23010 1.23657 0.86490 0.79298 0.79670 0.81579 1.20196 1.21368 1.20201 1.22163 0.77800 0.83976 0.84116 1.90531 1.37557 1.26948 1.86473 1.46261 1.54618 1.33092 1.03946 1.18988 0.85832 1.00428 0.85604 0.85293 1.24095 0.88769 0.79297 0.77196 1.90748 1.67532 1.30499 1.49212 1.84525 1.34972 1.66127 1.47131 1.19518 0.98688 0.94799 0.95974 1.21044 0.97229 0.96162 0.98130 1.21119 0.98008 0.99508 0.94819 1.21217 0.99639 0.93298 0.99180 1.21132 0.97538 0.97132 0.97913 1.21017 0.97139 0.98798 0.94037 0.94857 0.96872 0.88713 0.92894 0.76078 0.73595 0.85704 0.85660 0.85935 0.85680 0.85328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.05 8.87 37.16 0.33 -2.72 16 2 C 0.03 0.83 2.64 -92.92 -0.25 0.58 16 3 H 0.06 1.48 8.14 -51.93 -0.42 1.06 16 4 C -0.50 -14.45 8.37 -34.44 -0.29 -14.74 16 5 H 0.07 2.23 6.75 -52.49 -0.35 1.88 16 6 C 0.06 1.65 5.30 -17.82 -0.09 1.56 16 7 N -0.90 -25.39 11.32 55.43 0.63 -24.76 16 8 Si 0.90 22.11 29.54 -169.99 -5.02 17.09 16 9 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 10 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 11 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 12 C 0.53 12.34 6.98 -10.98 -0.08 12.27 16 13 O -0.54 -14.21 15.12 5.56 0.08 -14.13 16 14 N -0.72 -13.11 4.45 -56.07 -0.25 -13.35 16 15 C 0.20 3.11 2.68 -70.24 -0.19 2.92 16 16 H 0.13 2.06 7.44 -51.93 -0.39 1.67 16 17 C 0.47 7.57 7.64 36.01 0.28 7.84 16 18 O -0.49 -9.83 17.08 -18.75 -0.32 -10.15 16 19 O -0.52 -6.31 13.34 -39.24 -0.52 -6.84 16 20 C -0.09 -1.12 4.88 -104.63 -0.51 -1.63 16 21 C -0.11 -1.24 9.04 -39.58 -0.36 -1.60 16 22 C -0.12 -1.12 10.05 -39.58 -0.40 -1.52 16 23 C -0.12 -1.01 10.05 -39.58 -0.40 -1.41 16 24 C -0.12 -1.08 10.05 -39.58 -0.40 -1.48 16 25 C -0.09 -0.98 9.67 -39.59 -0.38 -1.36 16 26 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 27 H 0.01 0.24 7.56 -51.93 -0.39 -0.15 16 28 H 0.09 2.40 6.07 -51.93 -0.32 2.08 16 29 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 30 H 0.40 6.44 6.30 -40.82 -0.26 6.18 16 31 H 0.41 3.25 9.10 45.56 0.41 3.66 16 32 H 0.13 1.41 6.93 -52.49 -0.36 1.04 16 33 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 34 H 0.12 0.78 8.06 -52.48 -0.42 0.36 16 35 H 0.13 0.84 8.06 -52.49 -0.42 0.41 16 36 H 0.13 1.20 8.04 -52.48 -0.42 0.78 16 LS Contribution 315.35 15.07 4.75 4.75 Total: -1.00 -34.62 315.35 -6.71 -41.33 By element: Atomic # 1 Polarization: 10.68 SS G_CDS: -3.33 Total: 7.36 kcal Atomic # 6 Polarization: 1.44 SS G_CDS: -2.73 Total: -1.29 kcal Atomic # 7 Polarization: -38.49 SS G_CDS: 0.38 Total: -38.12 kcal Atomic # 8 Polarization: -30.36 SS G_CDS: -0.76 Total: -31.12 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -34.62 -6.71 -41.33 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592210458.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.760 kcal (2) G-P(sol) polarization free energy of solvation -34.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds