Wall clock time and date at job start Mon Mar 30 2020 01:36:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47821 * 2 1 4 4 C 1.50700 * 109.47037 * 240.00012 * 2 1 3 5 5 H 1.08000 * 120.00144 * 240.00002 * 4 2 1 6 6 C 1.37883 * 120.00073 * 60.00187 * 4 2 1 7 7 N 1.31512 * 119.99774 * 0.02562 * 6 4 2 8 8 Si 1.86794 * 120.00265 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.47176 * 59.99549 * 8 6 4 10 10 H 1.48495 * 109.47292 * 179.97438 * 8 6 4 11 11 H 1.48502 * 109.47216 * 300.00390 * 8 6 4 12 12 C 1.50703 * 109.47013 * 120.00448 * 2 1 3 13 13 O 1.21277 * 120.00066 * 120.00175 * 12 2 1 14 14 N 1.34779 * 119.99831 * 299.99323 * 12 2 1 15 15 C 1.46493 * 119.99897 * 179.97438 * 14 12 2 16 16 H 1.08997 * 109.47261 * 325.00633 * 15 14 12 17 17 C 1.50706 * 109.47153 * 85.00552 * 15 14 12 18 18 O 1.20825 * 119.99859 * 359.97438 * 17 15 14 19 19 O 1.34224 * 120.00295 * 180.02562 * 17 15 14 20 20 C 1.50696 * 109.47208 * 205.00173 * 15 14 12 21 21 C 1.38233 * 120.00250 * 319.73248 * 20 15 14 22 22 C 1.38235 * 120.00171 * 179.81029 * 21 20 15 23 23 C 1.38231 * 119.99931 * 0.39240 * 22 21 20 24 24 C 1.38237 * 119.99987 * 359.85925 * 23 22 21 25 25 C 1.38230 * 119.99824 * 359.95291 * 24 23 22 26 26 H 1.08998 * 109.47108 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47068 * 300.00126 * 1 2 3 28 28 H 1.09005 * 109.46721 * 59.99569 * 1 2 3 29 29 H 0.96995 * 120.00275 * 179.97438 * 7 6 4 30 30 H 0.97001 * 119.99623 * 0.02562 * 14 12 2 31 31 H 0.96700 * 117.00196 * 179.97438 * 19 17 15 32 32 H 1.08001 * 119.99534 * 359.97438 * 21 20 15 33 33 H 1.07997 * 120.00136 * 180.23226 * 22 21 20 34 34 H 1.08006 * 119.99888 * 179.83730 * 23 22 21 35 35 H 1.07997 * 119.99926 * 179.97438 * 24 23 22 36 36 H 1.08007 * 119.99686 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2393 -2.4828 7 7 0.9436 0.8303 -2.6034 8 14 2.3212 -1.1203 -4.0080 9 1 1.8257 -2.5202 -4.0078 10 1 1.8259 -0.4205 -5.2205 11 1 3.8062 -1.1210 -4.0082 12 6 2.0323 -0.7105 1.2304 13 8 2.7296 -1.6966 1.1191 14 7 1.7068 -0.2500 2.4546 15 6 2.1946 -0.9410 3.6507 16 1 2.2308 -2.0138 3.4611 17 6 3.5763 -0.4438 3.9896 18 8 4.0999 0.4007 3.3023 19 8 4.2256 -0.9399 5.0545 20 6 1.2648 -0.6658 4.8042 21 6 0.7351 0.5991 4.9784 22 6 -0.1210 0.8506 6.0342 23 6 -0.4409 -0.1608 6.9206 24 6 0.0929 -1.4244 6.7494 25 6 0.9458 -1.6768 5.6913 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 0.7096 1.1619 -3.4843 30 1 1.1489 0.5385 2.5435 31 1 5.1096 -0.5903 5.2317 32 1 0.9880 1.3902 4.2880 33 1 -0.5378 1.8378 6.1682 34 1 -1.1077 0.0364 7.7470 35 1 -0.1568 -2.2144 7.4421 36 1 1.3632 -2.6640 5.5578 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592210458.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:29 Heat of formation + Delta-G solvation = -127.017532 kcal Electronic energy + Delta-G solvation = -21329.622276 eV Core-core repulsion = 17970.662946 eV Total energy + Delta-G solvation = -3358.959330 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.95664 -40.37194 -39.90682 -37.24803 -36.06977 -35.79467 -33.08608 -31.96144 -31.66170 -28.48769 -27.20239 -24.77884 -23.65519 -23.52058 -21.93179 -21.13314 -19.28032 -18.60801 -18.31704 -17.99706 -17.28790 -17.10005 -16.68300 -16.31710 -15.82485 -15.68170 -15.30856 -14.82240 -14.56193 -14.29334 -14.16587 -13.77668 -13.56535 -13.39356 -12.98000 -12.73438 -12.65828 -12.61939 -12.24142 -12.22978 -12.01212 -11.95363 -11.93397 -11.07926 -10.71973 -10.44887 -10.33316 -9.84821 -9.76860 -8.15779 -6.26629 0.25678 0.47780 1.05980 1.40777 1.42796 1.50114 1.54310 1.97831 2.36786 2.48407 2.93878 3.13732 3.35384 3.79384 4.08012 4.15856 4.21969 4.30851 4.35878 4.60038 4.68505 4.73139 4.92257 4.95138 4.99816 5.11887 5.23419 5.46218 5.47209 5.52712 5.56658 5.60492 5.72766 5.90791 6.05352 6.16993 6.54838 6.81006 6.86458 7.30709 7.43059 8.90151 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.025039 B = 0.004622 C = 0.004227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.990175 B = 6056.791813 C = 6622.330075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.026 3.974 3 H 0.038 0.962 4 C -0.531 4.531 5 H 0.049 0.951 6 C 0.020 3.980 7 N -0.910 5.910 8 Si 0.958 3.042 9 H -0.273 1.273 10 H -0.273 1.273 11 H -0.279 1.279 12 C 0.531 3.469 13 O -0.578 6.578 14 N -0.706 5.706 15 C 0.198 3.802 16 H 0.124 0.876 17 C 0.473 3.527 18 O -0.540 6.540 19 O -0.500 6.500 20 C -0.106 4.106 21 C -0.123 4.123 22 C -0.119 4.119 23 C -0.110 4.110 24 C -0.117 4.117 25 C -0.100 4.100 26 H 0.028 0.972 27 H 0.051 0.949 28 H 0.072 0.928 29 H 0.266 0.734 30 H 0.413 0.587 31 H 0.427 0.573 32 H 0.119 0.881 33 H 0.147 0.853 34 H 0.153 0.847 35 H 0.153 0.847 36 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.907 -0.832 21.988 22.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.005 3.995 3 H 0.056 0.944 4 C -0.570 4.570 5 H 0.067 0.933 6 C -0.179 4.179 7 N -0.549 5.549 8 Si 0.783 3.217 9 H -0.199 1.199 10 H -0.198 1.198 11 H -0.205 1.205 12 C 0.321 3.679 13 O -0.457 6.457 14 N -0.361 5.361 15 C 0.091 3.909 16 H 0.141 0.859 17 C 0.314 3.686 18 O -0.429 6.429 19 O -0.312 6.312 20 C -0.107 4.107 21 C -0.142 4.142 22 C -0.137 4.137 23 C -0.128 4.128 24 C -0.135 4.135 25 C -0.118 4.118 26 H 0.047 0.953 27 H 0.070 0.930 28 H 0.091 0.909 29 H 0.075 0.925 30 H 0.252 0.748 31 H 0.288 0.712 32 H 0.137 0.863 33 H 0.164 0.836 34 H 0.171 0.829 35 H 0.171 0.829 36 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -3.726 -1.337 21.494 21.856 hybrid contribution 1.086 0.344 -1.098 1.582 sum -2.640 -0.993 20.397 20.591 Atomic orbital electron populations 1.21556 0.94483 0.99791 1.01825 1.18808 0.95743 0.95735 0.89194 0.94437 1.21231 1.31857 1.12863 0.91018 0.93257 1.25608 0.95128 0.95750 1.01439 1.69940 1.37068 1.23452 1.24451 0.85620 0.78509 0.78847 0.78709 1.19858 1.19774 1.20456 1.21685 0.77504 0.83430 0.85253 1.90500 1.39306 1.28567 1.87277 1.45895 1.53697 1.32988 1.03542 1.19121 0.86672 0.99559 0.85555 0.85851 1.24126 0.88855 0.78402 0.77177 1.90737 1.68581 1.32707 1.50910 1.84463 1.36260 1.65304 1.45195 1.19327 0.99544 0.96067 0.95725 1.21124 0.98220 0.95675 0.99133 1.21409 0.97253 1.00935 0.94106 1.21636 0.99057 0.92730 0.99335 1.21488 0.96379 0.98179 0.97465 1.21212 0.97588 0.98750 0.94253 0.95317 0.93009 0.90880 0.92512 0.74833 0.71179 0.86281 0.83570 0.82920 0.82905 0.84477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.48 8.87 71.98 0.64 -4.84 16 2 C 0.03 1.38 2.64 -12.29 -0.03 1.34 16 3 H 0.04 2.08 8.14 -2.39 -0.02 2.06 16 4 C -0.53 -31.60 8.37 25.60 0.21 -31.39 16 5 H 0.05 3.12 6.75 -2.91 -0.02 3.10 16 6 C 0.02 1.15 5.30 84.66 0.45 1.59 16 7 N -0.91 -51.94 11.32 21.45 0.24 -51.70 16 8 Si 0.96 45.74 29.54 68.60 2.03 47.76 16 9 H -0.27 -12.84 7.11 99.48 0.71 -12.13 16 10 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 11 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 12 C 0.53 25.52 6.98 87.66 0.61 26.13 16 13 O -0.58 -31.55 15.12 -3.02 -0.05 -31.59 16 14 N -0.71 -25.92 4.45 -449.70 -2.00 -27.92 16 15 C 0.20 6.18 2.68 43.50 0.12 6.30 16 16 H 0.12 3.99 7.44 -2.39 -0.02 3.97 16 17 C 0.47 15.33 7.64 71.24 0.54 15.87 16 18 O -0.54 -21.92 17.08 21.97 0.38 -21.54 16 19 O -0.50 -11.63 13.34 -51.35 -0.69 -12.32 16 20 C -0.11 -2.53 4.88 -19.87 -0.10 -2.63 16 21 C -0.12 -2.67 9.04 22.27 0.20 -2.47 16 22 C -0.12 -1.96 10.05 22.27 0.22 -1.73 16 23 C -0.11 -1.50 10.05 22.27 0.22 -1.28 16 24 C -0.12 -1.72 10.05 22.27 0.22 -1.50 16 25 C -0.10 -1.93 9.67 22.27 0.22 -1.71 16 26 H 0.03 1.30 8.14 -2.39 -0.02 1.29 16 27 H 0.05 1.93 7.56 -2.39 -0.02 1.91 16 28 H 0.07 3.72 6.07 -2.38 -0.01 3.70 16 29 H 0.27 14.34 8.31 -92.71 -0.77 13.57 16 30 H 0.41 13.21 6.30 -92.71 -0.58 12.63 16 31 H 0.43 6.19 9.10 -74.06 -0.67 5.52 16 32 H 0.12 2.62 6.93 -2.91 -0.02 2.60 16 33 H 0.15 1.72 8.06 -2.91 -0.02 1.70 16 34 H 0.15 1.17 8.06 -2.91 -0.02 1.15 16 35 H 0.15 1.37 8.06 -2.91 -0.02 1.35 16 36 H 0.14 2.32 8.04 -2.91 -0.02 2.29 16 Total: -1.00 -76.46 315.35 3.31 -73.14 By element: Atomic # 1 Polarization: 20.61 SS G_CDS: -0.13 Total: 20.48 kcal Atomic # 6 Polarization: 0.16 SS G_CDS: 3.53 Total: 3.69 kcal Atomic # 7 Polarization: -77.86 SS G_CDS: -1.76 Total: -79.62 kcal Atomic # 8 Polarization: -65.10 SS G_CDS: -0.36 Total: -65.46 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 2.03 Total: 47.76 kcal Total: -76.46 3.31 -73.14 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592210458.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.874 kcal (2) G-P(sol) polarization free energy of solvation -76.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds