Wall clock time and date at job start Mon Mar 30 2020 01:36:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.47466 * 2 1 4 4 C 1.50703 * 109.47090 * 240.00003 * 2 1 3 5 5 H 1.08003 * 119.99547 * 275.10548 * 4 2 1 6 6 C 1.37877 * 120.00042 * 95.10343 * 4 2 1 7 7 N 1.31513 * 119.99822 * 184.91416 * 6 4 2 8 8 Si 1.86802 * 119.99945 * 4.91169 * 6 4 2 9 9 H 1.48499 * 109.46762 * 84.82207 * 8 6 4 10 10 H 1.48496 * 109.46877 * 204.82113 * 8 6 4 11 11 H 1.48496 * 109.47127 * 324.82015 * 8 6 4 12 12 C 1.50703 * 109.46967 * 119.99850 * 2 1 3 13 13 O 1.21281 * 119.99733 * 120.00079 * 12 2 1 14 14 N 1.34775 * 120.00102 * 299.99803 * 12 2 1 15 15 C 1.46503 * 119.99891 * 180.02562 * 14 12 2 16 16 C 1.50698 * 109.46819 * 180.02562 * 15 14 12 17 17 C 1.38385 * 119.92569 * 269.72132 * 16 15 14 18 18 C 1.38346 * 120.30682 * 179.72792 * 17 16 15 19 19 C 1.37969 * 120.14617 * 0.54778 * 18 17 16 20 20 C 1.39608 * 119.84761 * 359.73475 * 19 18 17 21 21 C 1.47724 * 120.15297 * 180.02562 * 20 19 18 22 22 O 1.21469 * 120.00543 * 179.97438 * 21 20 19 23 23 O 1.34715 * 119.99652 * 359.97215 * 21 20 19 24 24 C 1.37926 * 119.92281 * 90.00442 * 16 15 14 25 25 H 1.08993 * 109.47166 * 175.07580 * 1 2 3 26 26 H 1.09000 * 109.46549 * 295.07398 * 1 2 3 27 27 H 1.08995 * 109.46873 * 55.07119 * 1 2 3 28 28 H 0.96996 * 119.99659 * 180.02562 * 7 6 4 29 29 H 0.96991 * 120.00077 * 0.02562 * 14 12 2 30 30 H 1.09000 * 109.46875 * 299.99820 * 15 14 12 31 31 H 1.09002 * 109.46920 * 59.99833 * 15 14 12 32 32 H 1.08012 * 119.84456 * 0.02562 * 17 16 15 33 33 H 1.07996 * 119.92748 * 180.25987 * 18 17 16 34 34 H 1.08002 * 120.07718 * 179.70205 * 19 18 17 35 35 H 0.96694 * 116.99965 * 180.02562 * 23 21 20 36 36 H 1.07992 * 120.07706 * 359.96986 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.1339 -1.7857 -1.2295 6 6 2.3623 0.0123 -2.3574 7 7 2.7080 -0.6129 -3.4616 8 14 2.3182 1.8793 -2.3157 9 1 3.6040 2.3929 -1.7787 10 1 2.1127 2.4003 -3.6910 11 1 1.2030 2.3287 -1.4443 12 6 2.0324 -0.7104 1.2305 13 8 2.7296 -1.6965 1.1192 14 7 1.7068 -0.2499 2.4546 15 6 2.1956 -0.9402 3.6508 16 6 1.6926 -0.2302 4.8812 17 6 2.4437 0.7844 5.4483 18 6 1.9869 1.4453 6.5745 19 6 0.7831 1.0887 7.1467 20 6 0.0231 0.0622 6.5832 21 6 -1.2671 -0.3248 7.1899 22 8 -1.9264 -1.2180 6.6971 23 8 -1.7123 0.3131 8.2897 24 6 0.4875 -0.5969 5.4429 25 1 -0.3633 -1.0238 -0.0882 26 1 -0.3632 0.4355 0.9308 27 1 -0.3633 0.5884 -0.8425 28 1 2.9405 -0.1044 -4.2542 29 1 1.1489 0.5385 2.5436 30 1 1.8326 -1.9680 3.6509 31 1 3.2856 -0.9398 3.6506 32 1 3.3888 1.0648 5.0067 33 1 2.5761 2.2390 7.0096 34 1 0.4299 1.6022 8.0287 35 1 -2.5617 0.0246 8.6508 36 1 -0.0957 -1.3916 5.0018 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592210759.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:17 Heat of formation + Delta-G solvation = -110.305133 kcal Electronic energy + Delta-G solvation = -20454.375930 eV Core-core repulsion = 17096.141304 eV Total energy + Delta-G solvation = -3358.234626 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.75540 -39.43354 -38.54431 -36.41606 -34.62229 -33.63975 -31.83597 -31.55699 -30.84649 -26.28290 -25.23694 -25.09690 -22.59179 -21.88463 -21.14331 -19.38683 -18.26417 -17.68865 -17.04097 -16.31740 -16.03191 -15.94827 -15.60850 -15.33019 -14.64953 -14.15906 -14.13040 -13.69601 -13.30812 -13.12082 -12.83048 -12.60175 -12.33336 -12.10151 -11.90200 -11.88480 -11.41235 -11.34369 -11.08912 -10.92212 -10.74907 -10.26080 -9.81673 -9.42089 -9.37633 -9.16065 -8.65491 -8.56012 -8.49689 -6.05910 -4.05096 0.34539 0.93670 2.20792 2.64359 3.24477 3.30960 3.33699 3.34618 3.63274 4.00411 4.37783 4.38851 4.50999 4.63108 4.81917 4.95134 5.02893 5.24436 5.39637 5.50493 5.64804 5.75163 5.89645 5.99528 6.05448 6.10612 6.16934 6.25685 6.40355 6.46815 6.54490 6.84045 6.94167 7.19598 7.54203 7.56335 8.14215 8.55107 9.09849 9.14692 9.53622 11.07463 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.026841 B = 0.003626 C = 0.003554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.935279 B = 7720.591535 C = 7877.423012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.004 4.004 3 H 0.054 0.946 4 C -0.495 4.495 5 H 0.086 0.914 6 C 0.071 3.929 7 N -0.895 5.895 8 Si 0.872 3.128 9 H -0.275 1.275 10 H -0.287 1.287 11 H -0.265 1.265 12 C 0.519 3.481 13 O -0.528 6.528 14 N -0.746 5.746 15 C 0.159 3.841 16 C -0.109 4.109 17 C -0.063 4.063 18 C -0.135 4.135 19 C -0.059 4.059 20 C -0.133 4.133 21 C 0.527 3.473 22 O -0.510 6.510 23 O -0.514 6.514 24 C -0.036 4.036 25 H 0.052 0.948 26 H 0.026 0.974 27 H 0.054 0.946 28 H 0.265 0.735 29 H 0.395 0.605 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.134 0.866 33 H 0.134 0.866 34 H 0.138 0.862 35 H 0.414 0.586 36 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.426 7.278 24.406 26.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.026 4.026 3 H 0.072 0.928 4 C -0.533 4.533 5 H 0.104 0.896 6 C -0.131 4.131 7 N -0.533 5.533 8 Si 0.699 3.301 9 H -0.201 1.201 10 H -0.213 1.213 11 H -0.189 1.189 12 C 0.308 3.692 13 O -0.402 6.402 14 N -0.402 5.402 15 C 0.035 3.965 16 C -0.109 4.109 17 C -0.082 4.082 18 C -0.153 4.153 19 C -0.078 4.078 20 C -0.134 4.134 21 C 0.371 3.629 22 O -0.399 6.399 23 O -0.326 6.326 24 C -0.054 4.054 25 H 0.071 0.929 26 H 0.045 0.955 27 H 0.073 0.927 28 H 0.075 0.925 29 H 0.229 0.771 30 H 0.092 0.908 31 H 0.093 0.907 32 H 0.152 0.848 33 H 0.151 0.849 34 H 0.156 0.844 35 H 0.273 0.727 36 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -4.636 6.422 23.787 25.071 hybrid contribution -0.806 1.241 0.286 1.507 sum -5.442 7.663 24.073 25.843 Atomic orbital electron populations 1.21952 0.96754 1.01426 0.99053 1.19349 0.94073 0.96935 0.92215 0.92795 1.20759 1.42946 0.96210 0.93387 0.89600 1.25034 0.94680 0.98016 0.95342 1.69884 1.46031 1.35683 1.01680 0.86953 0.78952 0.86733 0.77469 1.20130 1.21260 1.18946 1.21817 0.78992 0.84583 0.83836 1.90589 1.36945 1.26241 1.86435 1.46429 1.55788 1.32827 1.05151 1.20092 0.99353 0.95730 0.81300 1.19996 0.94970 0.98029 0.97939 1.21500 0.99346 0.93094 0.94236 1.21185 0.96503 1.00887 0.96730 1.21483 0.93517 0.94166 0.98595 1.19006 0.93825 1.01594 0.98996 1.20910 0.85673 0.78685 0.77610 1.90921 1.57500 1.29804 1.61700 1.84541 1.43115 1.62244 1.42688 1.21265 0.94459 0.97431 0.92291 0.92864 0.95509 0.92715 0.92546 0.77123 0.90833 0.90726 0.84802 0.84855 0.84448 0.72674 0.84116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.68 9.12 37.16 0.34 -2.34 16 2 C 0.00 -0.09 2.30 -92.92 -0.21 -0.30 16 3 H 0.05 1.21 5.29 -51.93 -0.27 0.93 16 4 C -0.49 -14.24 8.36 -34.44 -0.29 -14.52 16 5 H 0.09 2.81 7.61 -52.48 -0.40 2.41 16 6 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 7 N -0.90 -27.62 13.96 55.43 0.77 -26.85 16 8 Si 0.87 20.86 26.99 -169.99 -4.59 16.27 16 9 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 10 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 11 H -0.26 -5.83 6.82 56.52 0.39 -5.45 16 12 C 0.52 11.32 7.15 -10.98 -0.08 11.24 16 13 O -0.53 -13.68 15.77 5.56 0.09 -13.60 16 14 N -0.75 -12.02 5.41 -61.47 -0.33 -12.36 16 15 C 0.16 2.16 5.80 -5.19 -0.03 2.13 16 16 C -0.11 -1.17 5.24 -104.68 -0.55 -1.72 16 17 C -0.06 -0.56 9.69 -39.49 -0.38 -0.95 16 18 C -0.14 -1.01 10.03 -39.64 -0.40 -1.41 16 19 C -0.06 -0.47 9.62 -39.17 -0.38 -0.85 16 20 C -0.13 -1.34 5.87 -104.98 -0.62 -1.95 16 21 C 0.53 5.43 8.27 34.61 0.29 5.71 16 22 O -0.51 -6.89 17.13 -19.24 -0.33 -7.22 16 23 O -0.51 -3.53 12.68 -40.53 -0.51 -4.04 16 24 C -0.04 -0.39 9.24 -39.17 -0.36 -0.76 16 25 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 26 H 0.03 0.43 7.43 -51.93 -0.39 0.04 16 27 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 28 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 29 H 0.40 5.45 7.82 -40.82 -0.32 5.13 16 30 H 0.07 1.06 8.08 -51.93 -0.42 0.64 16 31 H 0.07 1.03 8.08 -51.93 -0.42 0.61 16 32 H 0.13 1.04 8.06 -52.48 -0.42 0.62 16 33 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16 34 H 0.14 0.84 7.61 -52.49 -0.40 0.44 16 35 H 0.41 1.06 9.11 45.56 0.42 1.48 16 36 H 0.14 1.66 7.65 -52.49 -0.40 1.26 16 LS Contribution 318.53 15.07 4.80 4.80 Total: -1.00 -36.03 318.53 -6.32 -42.35 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: -3.45 Total: 4.42 kcal Atomic # 6 Polarization: -1.00 SS G_CDS: -2.77 Total: -3.77 kcal Atomic # 7 Polarization: -39.65 SS G_CDS: 0.44 Total: -39.21 kcal Atomic # 8 Polarization: -24.10 SS G_CDS: -0.76 Total: -24.86 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -4.59 Total: 16.27 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -36.03 -6.32 -42.35 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592210759.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.959 kcal (2) G-P(sol) polarization free energy of solvation -36.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds