Wall clock time and date at job start Mon Mar 30 2020 01:36:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.47466 * 2 1 4 4 C 1.50703 * 109.47090 * 240.00003 * 2 1 3 5 5 H 1.08003 * 119.99547 * 275.10548 * 4 2 1 6 6 C 1.37877 * 120.00042 * 95.10343 * 4 2 1 7 7 N 1.31513 * 119.99822 * 184.91416 * 6 4 2 8 8 Si 1.86802 * 119.99945 * 4.91169 * 6 4 2 9 9 H 1.48499 * 109.46762 * 84.82207 * 8 6 4 10 10 H 1.48496 * 109.46877 * 204.82113 * 8 6 4 11 11 H 1.48496 * 109.47127 * 324.82015 * 8 6 4 12 12 C 1.50703 * 109.46967 * 119.99850 * 2 1 3 13 13 O 1.21281 * 119.99733 * 120.00079 * 12 2 1 14 14 N 1.34775 * 120.00102 * 299.99803 * 12 2 1 15 15 C 1.46503 * 119.99891 * 180.02562 * 14 12 2 16 16 C 1.50698 * 109.46819 * 180.02562 * 15 14 12 17 17 C 1.38385 * 119.92569 * 269.72132 * 16 15 14 18 18 C 1.38346 * 120.30682 * 179.72792 * 17 16 15 19 19 C 1.37969 * 120.14617 * 0.54778 * 18 17 16 20 20 C 1.39608 * 119.84761 * 359.73475 * 19 18 17 21 21 C 1.47724 * 120.15297 * 180.02562 * 20 19 18 22 22 O 1.21469 * 120.00543 * 179.97438 * 21 20 19 23 23 O 1.34715 * 119.99652 * 359.97215 * 21 20 19 24 24 C 1.37926 * 119.92281 * 90.00442 * 16 15 14 25 25 H 1.08993 * 109.47166 * 175.07580 * 1 2 3 26 26 H 1.09000 * 109.46549 * 295.07398 * 1 2 3 27 27 H 1.08995 * 109.46873 * 55.07119 * 1 2 3 28 28 H 0.96996 * 119.99659 * 180.02562 * 7 6 4 29 29 H 0.96991 * 120.00077 * 0.02562 * 14 12 2 30 30 H 1.09000 * 109.46875 * 299.99820 * 15 14 12 31 31 H 1.09002 * 109.46920 * 59.99833 * 15 14 12 32 32 H 1.08012 * 119.84456 * 0.02562 * 17 16 15 33 33 H 1.07996 * 119.92748 * 180.25987 * 18 17 16 34 34 H 1.08002 * 120.07718 * 179.70205 * 19 18 17 35 35 H 0.96694 * 116.99965 * 180.02562 * 23 21 20 36 36 H 1.07992 * 120.07706 * 359.96986 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.1339 -1.7857 -1.2295 6 6 2.3623 0.0123 -2.3574 7 7 2.7080 -0.6129 -3.4616 8 14 2.3182 1.8793 -2.3157 9 1 3.6040 2.3929 -1.7787 10 1 2.1127 2.4003 -3.6910 11 1 1.2030 2.3287 -1.4443 12 6 2.0324 -0.7104 1.2305 13 8 2.7296 -1.6965 1.1192 14 7 1.7068 -0.2499 2.4546 15 6 2.1956 -0.9402 3.6508 16 6 1.6926 -0.2302 4.8812 17 6 2.4437 0.7844 5.4483 18 6 1.9869 1.4453 6.5745 19 6 0.7831 1.0887 7.1467 20 6 0.0231 0.0622 6.5832 21 6 -1.2671 -0.3248 7.1899 22 8 -1.9264 -1.2180 6.6971 23 8 -1.7123 0.3131 8.2897 24 6 0.4875 -0.5969 5.4429 25 1 -0.3633 -1.0238 -0.0882 26 1 -0.3632 0.4355 0.9308 27 1 -0.3633 0.5884 -0.8425 28 1 2.9405 -0.1044 -4.2542 29 1 1.1489 0.5385 2.5436 30 1 1.8326 -1.9680 3.6509 31 1 3.2856 -0.9398 3.6506 32 1 3.3888 1.0648 5.0067 33 1 2.5761 2.2390 7.0096 34 1 0.4299 1.6022 8.0287 35 1 -2.5617 0.0246 8.6508 36 1 -0.0957 -1.3916 5.0018 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592210759.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:17 Heat of formation + Delta-G solvation = -137.744505 kcal Electronic energy + Delta-G solvation = -20455.565790 eV Core-core repulsion = 17096.141304 eV Total energy + Delta-G solvation = -3359.424486 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.51797 -40.70697 -39.70795 -37.12324 -35.94909 -35.62302 -33.51134 -32.40617 -32.09887 -27.51165 -27.14863 -25.81708 -24.14954 -22.77016 -21.95346 -21.04602 -19.14588 -19.01691 -18.55408 -17.53502 -17.01955 -16.94620 -16.68689 -16.54412 -16.02467 -15.78165 -15.19145 -14.90692 -14.45672 -14.39868 -14.11851 -13.96710 -13.58595 -13.52887 -13.07763 -12.93131 -12.69964 -12.61988 -12.58847 -12.19232 -12.07954 -11.75090 -11.71702 -11.25372 -10.75181 -10.59321 -10.11083 -10.01248 -9.90527 -8.26359 -6.33346 -0.37164 0.20632 1.37048 1.40475 1.46599 1.50836 1.89411 2.00933 2.36606 2.38115 2.83945 3.11706 3.52845 3.84003 3.97605 4.08723 4.19988 4.25877 4.27547 4.41352 4.64978 4.66846 4.73411 4.82806 4.86482 4.93094 5.13270 5.21842 5.35229 5.45551 5.49120 5.52885 5.55287 5.58596 5.80104 6.26372 6.66206 6.84747 6.93093 7.28238 7.51282 8.91832 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.026841 B = 0.003626 C = 0.003554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.935279 B = 7720.591535 C = 7877.423012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.008 4.008 3 H 0.075 0.925 4 C -0.509 4.509 5 H 0.021 0.979 6 C 0.004 3.996 7 N -0.953 5.953 8 Si 0.949 3.051 9 H -0.266 1.266 10 H -0.286 1.286 11 H -0.224 1.224 12 C 0.519 3.481 13 O -0.583 6.583 14 N -0.721 5.721 15 C 0.160 3.840 16 C -0.116 4.116 17 C -0.060 4.060 18 C -0.124 4.124 19 C -0.045 4.045 20 C -0.147 4.147 21 C 0.532 3.468 22 O -0.553 6.553 23 O -0.500 6.500 24 C -0.048 4.048 25 H 0.035 0.965 26 H 0.073 0.927 27 H 0.057 0.943 28 H 0.267 0.733 29 H 0.411 0.589 30 H 0.059 0.941 31 H 0.075 0.925 32 H 0.148 0.852 33 H 0.168 0.832 34 H 0.163 0.837 35 H 0.434 0.566 36 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.016 11.435 27.569 30.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.030 4.030 3 H 0.093 0.907 4 C -0.547 4.547 5 H 0.039 0.961 6 C -0.192 4.192 7 N -0.593 5.593 8 Si 0.771 3.229 9 H -0.191 1.191 10 H -0.212 1.212 11 H -0.146 1.146 12 C 0.307 3.693 13 O -0.461 6.461 14 N -0.375 5.375 15 C 0.037 3.963 16 C -0.117 4.117 17 C -0.078 4.078 18 C -0.142 4.142 19 C -0.063 4.063 20 C -0.149 4.149 21 C 0.378 3.622 22 O -0.446 6.446 23 O -0.314 6.314 24 C -0.067 4.067 25 H 0.054 0.946 26 H 0.091 0.909 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.248 0.752 30 H 0.077 0.923 31 H 0.093 0.907 32 H 0.166 0.834 33 H 0.186 0.814 34 H 0.180 0.820 35 H 0.296 0.704 36 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -5.280 10.619 27.044 29.530 hybrid contribution -0.629 -0.128 -0.555 0.848 sum -5.909 10.491 26.490 29.098 Atomic orbital electron populations 1.21836 0.94048 1.01026 1.01659 1.19330 0.96060 0.97119 0.90483 0.90749 1.20901 1.43575 0.93789 0.96450 0.96082 1.26123 0.93900 1.04865 0.94328 1.70082 1.47882 1.38486 1.02826 0.85726 0.80657 0.78202 0.78346 1.19111 1.21173 1.14612 1.21514 0.78543 0.83884 0.85311 1.90574 1.39591 1.28593 1.87388 1.46077 1.54512 1.32676 1.04264 1.20123 0.99342 0.95325 0.81468 1.19636 0.95529 0.99286 0.97235 1.21705 0.99456 0.92098 0.94540 1.21547 0.96212 1.00840 0.95586 1.21799 0.93082 0.92767 0.98697 1.19087 0.94266 1.02497 0.99005 1.20997 0.85469 0.77951 0.77790 1.90909 1.58757 1.31779 1.63129 1.84489 1.44410 1.61332 1.41190 1.21144 0.94668 0.97601 0.93256 0.94586 0.90864 0.92366 0.92396 0.75216 0.92276 0.90694 0.83406 0.81435 0.81986 0.70413 0.86011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.89 9.12 71.98 0.66 -4.23 16 2 C -0.01 -0.38 2.30 -12.28 -0.03 -0.41 16 3 H 0.07 3.09 5.29 -2.39 -0.01 3.08 16 4 C -0.51 -30.51 8.36 25.60 0.21 -30.29 16 5 H 0.02 1.48 7.61 -2.91 -0.02 1.46 16 6 C 0.00 0.24 5.47 84.65 0.46 0.71 16 7 N -0.95 -61.41 13.96 21.45 0.30 -61.11 16 8 Si 0.95 42.24 26.99 68.60 1.85 44.09 16 9 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 10 H -0.29 -12.63 7.11 99.48 0.71 -11.93 16 11 H -0.22 -8.44 6.82 99.48 0.68 -7.76 16 12 C 0.52 22.78 7.15 87.66 0.63 23.41 16 13 O -0.58 -31.66 15.77 -3.03 -0.05 -31.70 16 14 N -0.72 -22.28 5.41 -466.78 -2.53 -24.81 16 15 C 0.16 4.29 5.80 85.63 0.50 4.79 16 16 C -0.12 -2.30 5.24 -19.90 -0.10 -2.41 16 17 C -0.06 -0.85 9.69 22.33 0.22 -0.63 16 18 C -0.12 -1.25 10.03 22.23 0.22 -1.03 16 19 C -0.05 -0.53 9.62 22.54 0.22 -0.32 16 20 C -0.15 -2.63 5.87 -20.10 -0.12 -2.75 16 21 C 0.53 10.09 8.27 70.33 0.58 10.67 16 22 O -0.55 -14.84 17.13 19.94 0.34 -14.50 16 23 O -0.50 -5.43 12.68 -56.25 -0.71 -6.14 16 24 C -0.05 -1.01 9.24 22.54 0.21 -0.80 16 25 H 0.03 1.47 8.14 -2.39 -0.02 1.45 16 26 H 0.07 2.11 7.43 -2.39 -0.02 2.09 16 27 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 28 H 0.27 15.92 8.31 -92.71 -0.77 15.15 16 29 H 0.41 10.09 7.82 -92.71 -0.73 9.37 16 30 H 0.06 1.76 8.08 -2.39 -0.02 1.74 16 31 H 0.07 2.03 8.08 -2.39 -0.02 2.01 16 32 H 0.15 1.71 8.06 -2.90 -0.02 1.69 16 33 H 0.17 0.62 8.06 -2.91 -0.02 0.60 16 34 H 0.16 1.13 7.61 -2.91 -0.02 1.11 16 35 H 0.43 1.06 9.11 -74.06 -0.67 0.39 16 36 H 0.12 2.97 7.65 -2.91 -0.02 2.95 16 Total: -1.00 -85.14 318.53 2.56 -82.59 By element: Atomic # 1 Polarization: 15.16 SS G_CDS: -0.30 Total: 14.86 kcal Atomic # 6 Polarization: -6.94 SS G_CDS: 3.65 Total: -3.29 kcal Atomic # 7 Polarization: -83.69 SS G_CDS: -2.23 Total: -85.92 kcal Atomic # 8 Polarization: -51.92 SS G_CDS: -0.42 Total: -52.34 kcal Atomic # 14 Polarization: 42.24 SS G_CDS: 1.85 Total: 44.09 kcal Total: -85.14 2.56 -82.59 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592210759.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.158 kcal (2) G-P(sol) polarization free energy of solvation -85.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds