Wall clock time and date at job start Mon Mar 30 2020 01:36:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09006 * 109.46949 * 2 1 4 4 C 1.50696 * 109.47248 * 239.99978 * 2 1 3 5 5 H 1.08005 * 120.00350 * 239.99638 * 4 2 1 6 6 C 1.37877 * 120.00354 * 60.00103 * 4 2 1 7 7 N 1.31518 * 119.99561 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 120.00521 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47116 * 89.99443 * 8 6 4 10 10 H 1.48499 * 109.47419 * 210.00038 * 8 6 4 11 11 H 1.48508 * 109.46771 * 330.00122 * 8 6 4 12 12 C 1.50700 * 109.47251 * 119.99810 * 2 1 3 13 13 O 1.21281 * 120.00122 * 120.00245 * 12 2 1 14 14 N 1.34783 * 119.99763 * 300.00504 * 12 2 1 15 15 C 1.39926 * 119.99580 * 184.61559 * 14 12 2 16 16 C 1.38874 * 120.06834 * 144.91429 * 15 14 12 17 17 C 1.38109 * 119.92462 * 180.29564 * 16 15 14 18 18 C 1.38288 * 120.07253 * 359.41813 * 17 16 15 19 19 C 1.50698 * 119.92933 * 180.28055 * 18 17 16 20 20 C 1.50697 * 109.47220 * 270.31882 * 19 18 17 21 21 O 1.20831 * 120.00071 * 0.02562 * 20 19 18 22 22 O 1.34226 * 120.00327 * 180.02562 * 20 19 18 23 23 C 1.38279 * 120.13703 * 0.60192 * 18 17 16 24 24 C 1.38105 * 120.07578 * 359.67631 * 23 18 17 25 25 H 1.09000 * 109.47021 * 60.00531 * 1 2 3 26 26 H 1.08998 * 109.46653 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47463 * 300.00259 * 1 2 3 28 28 H 0.97003 * 119.99928 * 180.02562 * 7 6 4 29 29 H 0.97002 * 120.00184 * 4.60561 * 14 12 2 30 30 H 1.07996 * 120.03554 * 0.02562 * 16 15 14 31 31 H 1.08005 * 119.96241 * 179.69762 * 17 16 15 32 32 H 1.09000 * 109.47607 * 30.31943 * 19 18 17 33 33 H 1.08997 * 109.47068 * 150.32062 * 19 18 17 34 34 H 0.96696 * 117.00423 * 180.02562 * 22 20 19 35 35 H 1.08004 * 119.96104 * 179.70467 * 23 18 17 36 36 H 1.08001 * 120.04483 * 180.02562 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6534 -1.5885 -1.1314 6 6 1.6994 -0.2394 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3215 -1.1203 -4.0079 9 1 1.3429 -2.1617 -4.4118 10 1 2.4867 -0.1414 -5.1123 11 1 3.6294 -1.7584 -3.7121 12 6 2.0324 -0.7104 1.2305 13 8 2.7297 -1.6964 1.1192 14 7 1.7067 -0.2499 2.4546 15 6 2.2507 -0.8502 3.5954 16 6 2.5591 -0.0784 4.7080 17 6 3.1017 -0.6731 5.8302 18 6 3.3266 -2.0374 5.8512 19 6 3.9129 -2.6839 7.0798 20 6 5.4164 -2.6847 6.9781 21 8 5.9566 -2.2086 6.0077 22 8 6.1557 -3.2142 7.9654 23 6 3.0210 -2.8086 4.7449 24 6 2.4835 -2.2192 3.6175 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3632 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 0.7082 1.1608 -3.4844 29 1 1.0953 0.4978 2.5447 30 1 2.3790 0.9863 4.6940 31 1 3.3463 -0.0727 6.6940 32 1 3.6089 -2.1250 7.9648 33 1 3.5535 -3.7100 7.1569 34 1 7.1161 -3.1913 7.8555 35 1 3.2023 -3.8732 4.7627 36 1 2.2446 -2.8220 2.7538 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592211210.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:00 Heat of formation + Delta-G solvation = -109.173767 kcal Electronic energy + Delta-G solvation = -20584.074491 eV Core-core repulsion = 17225.888925 eV Total energy + Delta-G solvation = -3358.185566 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.55412 -39.84994 -38.15495 -36.25824 -34.55510 -33.84463 -31.90811 -30.77948 -30.37234 -27.23968 -25.19608 -23.43102 -22.74417 -22.11415 -20.69576 -19.39129 -18.24599 -17.50967 -16.68677 -16.33284 -16.14424 -15.79292 -15.36475 -14.89085 -14.56280 -13.90489 -13.85082 -13.40032 -13.23659 -13.01523 -12.75307 -12.47216 -12.24175 -11.67898 -11.65014 -11.59313 -11.07580 -10.99155 -10.78817 -10.73207 -10.70325 -10.36380 -10.00905 -9.80139 -9.04140 -8.84123 -8.61068 -8.37450 -7.74103 -6.07553 -4.11241 1.37340 1.60559 2.07561 2.92008 3.32198 3.38020 3.44813 3.51855 3.71465 4.07881 4.44353 4.51670 4.75817 5.08470 5.14901 5.24501 5.25531 5.26317 5.54560 5.73816 5.85535 6.01799 6.23818 6.31919 6.41533 6.52188 6.65667 6.67808 6.74271 6.83144 6.86737 7.33383 7.41207 7.69152 7.73964 7.89983 8.04198 8.30581 8.97094 9.03230 9.54623 11.00084 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.032123 B = 0.003515 C = 0.003295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.449918 B = 7963.543866 C = 8496.551946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.031 3.969 3 H 0.056 0.944 4 C -0.504 4.504 5 H 0.075 0.925 6 C 0.059 3.941 7 N -0.896 5.896 8 Si 0.901 3.099 9 H -0.280 1.280 10 H -0.287 1.287 11 H -0.272 1.272 12 C 0.518 3.482 13 O -0.522 6.522 14 N -0.689 5.689 15 C 0.171 3.829 16 C -0.156 4.156 17 C -0.083 4.083 18 C -0.118 4.118 19 C -0.063 4.063 20 C 0.472 3.528 21 O -0.499 6.499 22 O -0.523 6.523 23 C -0.083 4.083 24 C -0.125 4.125 25 H 0.096 0.904 26 H 0.033 0.967 27 H 0.013 0.987 28 H 0.262 0.738 29 H 0.408 0.592 30 H 0.125 0.875 31 H 0.120 0.880 32 H 0.111 0.889 33 H 0.112 0.888 34 H 0.409 0.591 35 H 0.120 0.880 36 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.130 -3.454 20.694 21.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.010 3.990 3 H 0.074 0.926 4 C -0.542 4.542 5 H 0.093 0.907 6 C -0.142 4.142 7 N -0.535 5.535 8 Si 0.729 3.271 9 H -0.206 1.206 10 H -0.212 1.212 11 H -0.197 1.197 12 C 0.310 3.690 13 O -0.395 6.395 14 N -0.335 5.335 15 C 0.075 3.925 16 C -0.177 4.177 17 C -0.102 4.102 18 C -0.119 4.119 19 C -0.100 4.100 20 C 0.313 3.687 21 O -0.385 6.385 22 O -0.336 6.336 23 C -0.101 4.101 24 C -0.145 4.145 25 H 0.114 0.886 26 H 0.052 0.948 27 H 0.032 0.968 28 H 0.071 0.929 29 H 0.243 0.757 30 H 0.143 0.857 31 H 0.138 0.862 32 H 0.130 0.870 33 H 0.130 0.870 34 H 0.267 0.733 35 H 0.138 0.862 36 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 2.277 -3.901 20.115 20.615 hybrid contribution 0.704 0.087 -0.863 1.117 sum 2.981 -3.814 19.252 19.851 Atomic orbital electron populations 1.21775 0.96279 1.00040 1.01160 1.18912 0.94285 0.96969 0.88794 0.92601 1.21125 1.31238 1.12948 0.88892 0.90677 1.24946 0.95032 0.95025 0.99163 1.69866 1.36975 1.23025 1.23672 0.86424 0.79495 0.79238 0.81926 1.20613 1.21243 1.19689 1.22311 0.78243 0.84368 0.84127 1.90536 1.36896 1.25865 1.86241 1.44152 1.48010 1.36552 1.04775 1.18013 0.95408 0.91939 0.87120 1.20857 1.03526 0.99396 0.93895 1.20636 0.98228 0.93579 0.97753 1.19072 1.03844 0.94090 0.94887 1.20174 0.86676 1.04340 0.98834 1.23610 0.91352 0.74083 0.79650 1.90802 1.73889 1.41982 1.31852 1.84523 1.25156 1.75750 1.48168 1.20834 0.97748 0.99443 0.92097 1.21354 1.00828 0.93611 0.98716 0.88566 0.94794 0.96835 0.92869 0.75656 0.85748 0.86232 0.87043 0.86988 0.73279 0.86194 0.83976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.01 8.86 37.16 0.33 -2.68 16 2 C 0.03 0.77 2.65 -92.92 -0.25 0.52 16 3 H 0.06 1.41 8.14 -51.93 -0.42 0.99 16 4 C -0.50 -14.17 8.37 -34.44 -0.29 -14.46 16 5 H 0.08 2.23 6.75 -52.48 -0.35 1.88 16 6 C 0.06 1.63 5.30 -17.82 -0.09 1.54 16 7 N -0.90 -24.92 11.32 55.43 0.63 -24.29 16 8 Si 0.90 21.76 29.54 -169.99 -5.02 16.74 16 9 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 10 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 12 C 0.52 11.76 6.99 -10.98 -0.08 11.68 16 13 O -0.52 -13.40 12.90 5.56 0.07 -13.33 16 14 N -0.69 -12.34 5.26 -9.86 -0.05 -12.39 16 15 C 0.17 2.90 6.30 -83.69 -0.53 2.38 16 16 C -0.16 -2.18 9.97 -39.39 -0.39 -2.57 16 17 C -0.08 -1.03 9.69 -39.61 -0.38 -1.42 16 18 C -0.12 -1.46 4.38 -104.59 -0.46 -1.92 16 19 C -0.06 -0.54 5.94 -29.04 -0.17 -0.72 16 20 C 0.47 5.03 8.32 36.00 0.30 5.33 16 21 O -0.50 -7.64 16.79 -18.75 -0.31 -7.96 16 22 O -0.52 -4.03 13.42 -39.25 -0.53 -4.56 16 23 C -0.08 -1.18 9.69 -39.61 -0.38 -1.56 16 24 C -0.12 -2.17 8.70 -39.39 -0.34 -2.51 16 25 H 0.10 2.38 6.07 -51.93 -0.32 2.06 16 26 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.01 0.24 7.47 -51.93 -0.39 -0.15 16 28 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 29 H 0.41 6.06 8.11 -40.82 -0.33 5.73 16 30 H 0.12 1.46 8.06 -52.49 -0.42 1.04 16 31 H 0.12 1.14 8.06 -52.48 -0.42 0.72 16 32 H 0.11 0.67 8.09 -51.93 -0.42 0.25 16 33 H 0.11 0.73 8.08 -51.93 -0.42 0.31 16 34 H 0.41 1.65 9.10 45.56 0.41 2.06 16 35 H 0.12 1.46 8.06 -52.48 -0.42 1.03 16 36 H 0.14 2.79 6.23 -52.49 -0.33 2.46 16 LS Contribution 314.38 15.07 4.74 4.74 Total: -1.00 -34.41 314.38 -6.60 -41.02 By element: Atomic # 1 Polarization: 9.81 SS G_CDS: -3.39 Total: 6.42 kcal Atomic # 6 Polarization: -3.65 SS G_CDS: -2.74 Total: -6.39 kcal Atomic # 7 Polarization: -37.26 SS G_CDS: 0.58 Total: -36.68 kcal Atomic # 8 Polarization: -25.07 SS G_CDS: -0.77 Total: -25.84 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -34.41 -6.60 -41.02 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592211210.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.158 kcal (2) G-P(sol) polarization free energy of solvation -34.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds