Wall clock time and date at job start Mon Mar 30 2020 01:36:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09006 * 109.46949 * 2 1 4 4 C 1.50696 * 109.47248 * 239.99978 * 2 1 3 5 5 H 1.08005 * 120.00350 * 239.99638 * 4 2 1 6 6 C 1.37877 * 120.00354 * 60.00103 * 4 2 1 7 7 N 1.31518 * 119.99561 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 120.00521 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47116 * 89.99443 * 8 6 4 10 10 H 1.48499 * 109.47419 * 210.00038 * 8 6 4 11 11 H 1.48508 * 109.46771 * 330.00122 * 8 6 4 12 12 C 1.50700 * 109.47251 * 119.99810 * 2 1 3 13 13 O 1.21281 * 120.00122 * 120.00245 * 12 2 1 14 14 N 1.34783 * 119.99763 * 300.00504 * 12 2 1 15 15 C 1.39926 * 119.99580 * 184.61559 * 14 12 2 16 16 C 1.38874 * 120.06834 * 144.91429 * 15 14 12 17 17 C 1.38109 * 119.92462 * 180.29564 * 16 15 14 18 18 C 1.38288 * 120.07253 * 359.41813 * 17 16 15 19 19 C 1.50698 * 119.92933 * 180.28055 * 18 17 16 20 20 C 1.50697 * 109.47220 * 270.31882 * 19 18 17 21 21 O 1.20831 * 120.00071 * 0.02562 * 20 19 18 22 22 O 1.34226 * 120.00327 * 180.02562 * 20 19 18 23 23 C 1.38279 * 120.13703 * 0.60192 * 18 17 16 24 24 C 1.38105 * 120.07578 * 359.67631 * 23 18 17 25 25 H 1.09000 * 109.47021 * 60.00531 * 1 2 3 26 26 H 1.08998 * 109.46653 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47463 * 300.00259 * 1 2 3 28 28 H 0.97003 * 119.99928 * 180.02562 * 7 6 4 29 29 H 0.97002 * 120.00184 * 4.60561 * 14 12 2 30 30 H 1.07996 * 120.03554 * 0.02562 * 16 15 14 31 31 H 1.08005 * 119.96241 * 179.69762 * 17 16 15 32 32 H 1.09000 * 109.47607 * 30.31943 * 19 18 17 33 33 H 1.08997 * 109.47068 * 150.32062 * 19 18 17 34 34 H 0.96696 * 117.00423 * 180.02562 * 22 20 19 35 35 H 1.08004 * 119.96104 * 179.70467 * 23 18 17 36 36 H 1.08001 * 120.04483 * 180.02562 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6534 -1.5885 -1.1314 6 6 1.6994 -0.2394 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3215 -1.1203 -4.0079 9 1 1.3429 -2.1617 -4.4118 10 1 2.4867 -0.1414 -5.1123 11 1 3.6294 -1.7584 -3.7121 12 6 2.0324 -0.7104 1.2305 13 8 2.7297 -1.6964 1.1192 14 7 1.7067 -0.2499 2.4546 15 6 2.2507 -0.8502 3.5954 16 6 2.5591 -0.0784 4.7080 17 6 3.1017 -0.6731 5.8302 18 6 3.3266 -2.0374 5.8512 19 6 3.9129 -2.6839 7.0798 20 6 5.4164 -2.6847 6.9781 21 8 5.9566 -2.2086 6.0077 22 8 6.1557 -3.2142 7.9654 23 6 3.0210 -2.8086 4.7449 24 6 2.4835 -2.2192 3.6175 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3632 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 0.7082 1.1608 -3.4844 29 1 1.0953 0.4978 2.5447 30 1 2.3790 0.9863 4.6940 31 1 3.3463 -0.0727 6.6940 32 1 3.6089 -2.1250 7.9648 33 1 3.5535 -3.7100 7.1569 34 1 7.1161 -3.1913 7.8555 35 1 3.2023 -3.8732 4.7627 36 1 2.2446 -2.8220 2.7538 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592211210.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:00 Heat of formation + Delta-G solvation = -133.160893 kcal Electronic energy + Delta-G solvation = -20585.114651 eV Core-core repulsion = 17225.888925 eV Total energy + Delta-G solvation = -3359.225726 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.60129 -41.10257 -39.47261 -37.06228 -35.97721 -35.83104 -33.23614 -32.11799 -31.86866 -28.35244 -27.23526 -24.96337 -23.91247 -23.32076 -21.74012 -21.00217 -19.01726 -18.94334 -18.24416 -17.66452 -17.44497 -16.97571 -16.60027 -16.40143 -16.12893 -15.32647 -15.28852 -14.68074 -14.56202 -14.30098 -14.15450 -13.65741 -13.38735 -13.15616 -13.00479 -12.79268 -12.68161 -12.57733 -12.47708 -12.25495 -12.09364 -12.03254 -11.64500 -11.16038 -11.09328 -10.62873 -10.36585 -9.83114 -9.00911 -8.18746 -6.29475 0.24231 0.49433 1.29567 1.39015 1.39679 1.51603 1.77131 2.17619 2.30647 2.46291 2.96566 3.11031 3.67288 3.88410 4.08559 4.18827 4.36060 4.46703 4.54997 4.64122 4.68990 4.75704 4.78915 4.88845 4.96011 5.10524 5.31509 5.40211 5.49469 5.59526 5.60431 5.69420 5.71876 5.89935 6.12280 6.16293 6.61252 6.79330 7.06219 7.31586 7.42287 8.87115 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.032123 B = 0.003515 C = 0.003295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.449918 B = 7963.543866 C = 8496.551946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.028 3.972 3 H 0.046 0.954 4 C -0.533 4.533 5 H 0.048 0.952 6 C 0.022 3.978 7 N -0.909 5.909 8 Si 0.956 3.044 9 H -0.273 1.273 10 H -0.273 1.273 11 H -0.281 1.281 12 C 0.520 3.480 13 O -0.563 6.563 14 N -0.671 5.671 15 C 0.134 3.866 16 C -0.150 4.150 17 C -0.083 4.083 18 C -0.107 4.107 19 C -0.062 4.062 20 C 0.480 3.520 21 O -0.556 6.556 22 O -0.512 6.512 23 C -0.093 4.093 24 C -0.153 4.153 25 H 0.074 0.926 26 H 0.024 0.976 27 H 0.054 0.946 28 H 0.266 0.734 29 H 0.422 0.578 30 H 0.149 0.851 31 H 0.159 0.841 32 H 0.150 0.850 33 H 0.139 0.861 34 H 0.425 0.575 35 H 0.135 0.865 36 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.165 -3.094 23.549 23.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.007 3.993 3 H 0.064 0.936 4 C -0.571 4.571 5 H 0.066 0.934 6 C -0.178 4.178 7 N -0.548 5.548 8 Si 0.781 3.219 9 H -0.198 1.198 10 H -0.198 1.198 11 H -0.206 1.206 12 C 0.311 3.689 13 O -0.440 6.440 14 N -0.317 5.317 15 C 0.040 3.960 16 C -0.170 4.170 17 C -0.101 4.101 18 C -0.108 4.108 19 C -0.098 4.098 20 C 0.324 3.676 21 O -0.446 6.446 22 O -0.326 6.326 23 C -0.111 4.111 24 C -0.173 4.173 25 H 0.093 0.907 26 H 0.043 0.957 27 H 0.073 0.927 28 H 0.075 0.925 29 H 0.260 0.740 30 H 0.167 0.833 31 H 0.176 0.824 32 H 0.168 0.832 33 H 0.156 0.844 34 H 0.287 0.713 35 H 0.153 0.847 36 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 2.294 -3.525 23.041 23.422 hybrid contribution 0.757 -0.060 -1.555 1.731 sum 3.051 -3.586 21.486 21.996 Atomic orbital electron populations 1.21590 0.94622 0.99678 1.02079 1.18822 0.95602 0.95992 0.88877 0.93633 1.21269 1.31864 1.12867 0.91097 0.93367 1.25576 0.95118 0.95710 1.01372 1.69937 1.37022 1.23434 1.24450 0.85590 0.78587 0.78588 0.79094 1.19814 1.19821 1.20582 1.21874 0.77996 0.83813 0.85251 1.90519 1.38899 1.27546 1.87052 1.43698 1.47749 1.36432 1.03839 1.18239 0.97857 0.92225 0.87672 1.21162 1.02389 1.00437 0.93026 1.21157 0.96628 0.94009 0.98285 1.19498 1.01660 0.94273 0.95374 1.20328 0.85144 1.06246 0.98106 1.23892 0.92137 0.72673 0.78907 1.90805 1.75034 1.44749 1.34039 1.84482 1.26629 1.74692 1.46778 1.21059 0.97526 1.00605 0.91918 1.21250 1.02981 0.94081 0.98987 0.90730 0.95682 0.92673 0.92461 0.73983 0.83307 0.82367 0.83198 0.84352 0.71336 0.84734 0.87512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.50 8.86 71.98 0.64 -4.86 16 2 C 0.03 1.43 2.65 -12.29 -0.03 1.40 16 3 H 0.05 2.38 8.14 -2.38 -0.02 2.36 16 4 C -0.53 -31.19 8.37 25.60 0.21 -30.97 16 5 H 0.05 3.03 6.75 -2.91 -0.02 3.01 16 6 C 0.02 1.22 5.30 84.65 0.45 1.67 16 7 N -0.91 -51.04 11.32 21.45 0.24 -50.80 16 8 Si 0.96 45.36 29.54 68.60 2.03 47.39 16 9 H -0.27 -12.54 7.11 99.48 0.71 -11.84 16 10 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 11 H -0.28 -13.60 7.11 99.48 0.71 -12.89 16 12 C 0.52 24.57 6.99 87.66 0.61 25.19 16 13 O -0.56 -30.76 12.90 -3.03 -0.04 -30.80 16 14 N -0.67 -24.33 5.26 -303.50 -1.60 -25.92 16 15 C 0.13 4.57 6.30 38.15 0.24 4.81 16 16 C -0.15 -3.87 9.97 22.39 0.22 -3.64 16 17 C -0.08 -1.76 9.69 22.25 0.22 -1.54 16 18 C -0.11 -2.35 4.38 -19.84 -0.09 -2.44 16 19 C -0.06 -0.80 5.94 29.10 0.17 -0.62 16 20 C 0.48 8.75 8.32 71.23 0.59 9.34 16 21 O -0.56 -16.18 16.79 21.95 0.37 -15.81 16 22 O -0.51 -6.10 13.42 -51.38 -0.69 -6.79 16 23 C -0.09 -2.60 9.69 22.25 0.22 -2.38 16 24 C -0.15 -5.51 8.70 22.39 0.19 -5.31 16 25 H 0.07 3.72 6.07 -2.39 -0.01 3.70 16 26 H 0.02 1.13 8.14 -2.39 -0.02 1.11 16 27 H 0.05 1.97 7.47 -2.39 -0.02 1.95 16 28 H 0.27 14.11 8.31 -92.71 -0.77 13.34 16 29 H 0.42 12.25 8.11 -92.71 -0.75 11.50 16 30 H 0.15 3.02 8.06 -2.91 -0.02 3.00 16 31 H 0.16 2.16 8.06 -2.91 -0.02 2.14 16 32 H 0.15 0.88 8.09 -2.39 -0.02 0.87 16 33 H 0.14 1.15 8.08 -2.39 -0.02 1.13 16 34 H 0.43 2.21 9.10 -74.06 -0.67 1.53 16 35 H 0.13 3.20 8.06 -2.91 -0.02 3.18 16 36 H 0.11 4.56 6.23 -2.91 -0.02 4.54 16 Total: -1.00 -78.73 314.38 3.67 -75.07 By element: Atomic # 1 Polarization: 17.33 SS G_CDS: -0.29 Total: 17.04 kcal Atomic # 6 Polarization: -13.02 SS G_CDS: 3.65 Total: -9.37 kcal Atomic # 7 Polarization: -75.37 SS G_CDS: -1.35 Total: -76.72 kcal Atomic # 8 Polarization: -53.04 SS G_CDS: -0.36 Total: -53.40 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 2.03 Total: 47.39 kcal Total: -78.73 3.67 -75.07 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592211210.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.095 kcal (2) G-P(sol) polarization free energy of solvation -78.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds