Wall clock time and date at job start Mon Mar 30 2020 01:37:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50699 * 109.47078 * 240.00207 * 2 1 3 5 5 H 1.08000 * 119.99792 * 239.99917 * 4 2 1 6 6 C 1.37878 * 119.99902 * 59.99463 * 4 2 1 7 7 N 1.31515 * 120.00126 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99745 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47256 * 90.00491 * 8 6 4 10 10 H 1.48506 * 109.46930 * 210.00332 * 8 6 4 11 11 H 1.48499 * 109.47104 * 330.00193 * 8 6 4 12 12 N 1.46505 * 109.47212 * 120.00008 * 2 1 3 13 13 C 1.34769 * 119.99798 * 274.99913 * 12 2 1 14 14 O 1.21547 * 120.00429 * 0.02562 * 13 12 2 15 15 C 1.47851 * 119.99649 * 179.97438 * 13 12 2 16 16 C 1.39594 * 120.14449 * 359.72746 * 15 13 12 17 17 C 1.37942 * 119.85393 * 179.79163 * 16 15 13 18 18 C 1.38377 * 120.13986 * 0.48352 * 17 16 15 19 19 C 1.38338 * 120.29584 * 359.74430 * 18 17 16 20 20 C 1.50700 * 119.92681 * 180.02562 * 19 18 17 21 21 C 1.50698 * 109.47102 * 270.02214 * 20 19 18 22 22 O 1.20826 * 119.99971 * 0.02562 * 21 20 19 23 23 O 1.34232 * 120.00083 * 180.02562 * 21 20 19 24 24 C 1.37975 * 120.14614 * 0.02562 * 19 18 17 25 25 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47533 * 299.99629 * 1 2 3 27 27 H 1.08996 * 109.47853 * 59.99972 * 1 2 3 28 28 H 0.96999 * 120.00073 * 179.97438 * 7 6 4 29 29 H 0.97005 * 119.99239 * 94.99888 * 12 2 1 30 30 H 1.08005 * 120.07249 * 359.97438 * 16 15 13 31 31 H 1.07996 * 119.92914 * 180.22686 * 17 16 15 32 32 H 1.08007 * 119.84994 * 179.76776 * 18 17 16 33 33 H 1.08996 * 109.47470 * 30.02389 * 20 19 18 34 34 H 1.09000 * 109.47154 * 150.02512 * 20 19 18 35 35 H 0.96701 * 117.00512 * 180.02562 * 23 21 20 36 36 H 1.07998 * 120.07346 * 180.02562 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6991 -0.2393 -2.4827 7 7 0.9433 0.8302 -2.6034 8 14 2.3212 -1.1203 -4.0080 9 1 1.3426 -2.1616 -4.4119 10 1 2.4864 -0.1413 -5.1123 11 1 3.6292 -1.7582 -3.7122 12 7 2.0183 -0.6906 1.1962 13 6 2.1471 -0.0183 2.3571 14 8 1.8576 1.1610 2.4118 15 6 2.6394 -0.7154 3.5644 16 6 2.9663 -2.0713 3.5066 17 6 3.4292 -2.7147 4.6356 18 6 3.5602 -2.0215 5.8260 19 6 3.2334 -0.6788 5.8912 20 6 3.3798 0.0683 7.1918 21 6 2.0939 -0.0249 7.9720 22 8 1.1551 -0.6357 7.5188 23 8 1.9915 0.5707 9.1706 24 6 2.7738 -0.0222 4.7681 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5137 0.8900 27 1 -0.3635 0.5138 -0.8899 28 1 0.7092 1.1618 -3.4843 29 1 2.2490 -1.6318 1.1525 30 1 2.8599 -2.6146 2.5793 31 1 3.6860 -3.7628 4.5913 32 1 3.9195 -2.5308 6.7080 33 1 4.1904 -0.3704 7.7736 34 1 3.6051 1.1147 6.9863 35 1 1.1472 0.4830 9.6338 36 1 2.5194 1.0261 4.8203 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592222539.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:25 Heat of formation + Delta-G solvation = -111.300203 kcal Electronic energy + Delta-G solvation = -20554.249253 eV Core-core repulsion = 17195.971478 eV Total energy + Delta-G solvation = -3358.277775 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.61988 -39.62073 -38.02124 -36.30348 -34.81786 -33.35467 -32.27370 -31.04954 -29.01407 -27.94906 -25.26072 -23.85006 -22.89610 -21.38845 -20.74228 -19.30504 -18.32284 -17.71842 -16.69947 -16.34684 -16.25248 -15.67987 -15.36314 -14.79359 -14.46952 -14.20253 -13.90675 -13.53376 -13.28439 -12.96084 -12.58808 -12.44358 -12.24712 -11.74269 -11.69748 -11.57894 -11.12329 -11.10516 -10.94551 -10.80472 -10.73151 -10.32493 -10.23381 -9.14885 -9.04251 -8.89440 -8.84325 -8.55645 -7.91149 -6.12257 -4.21781 0.99284 1.30207 2.00559 2.80018 3.24553 3.31254 3.33473 3.38619 4.01396 4.18163 4.33196 4.38291 4.68215 4.93909 5.00363 5.11276 5.15363 5.20015 5.30670 5.38341 5.59707 5.84662 5.96446 6.26316 6.37610 6.38197 6.45194 6.83101 6.88511 6.98540 7.15617 7.44400 7.56273 7.67079 7.69498 7.91666 8.14789 8.64371 8.77187 9.09081 9.45614 10.93814 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.035201 B = 0.003500 C = 0.003307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.230200 B = 7999.016111 C = 8463.876103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.264 3.736 3 H 0.050 0.950 4 C -0.535 4.535 5 H 0.061 0.939 6 C 0.066 3.934 7 N -0.883 5.883 8 Si 0.902 3.098 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.273 1.273 12 N -0.701 5.701 13 C 0.541 3.459 14 O -0.551 6.551 15 C -0.118 4.118 16 C -0.082 4.082 17 C -0.127 4.127 18 C -0.088 4.088 19 C -0.096 4.096 20 C -0.069 4.069 21 C 0.476 3.524 22 O -0.502 6.502 23 O -0.521 6.521 24 C -0.047 4.047 25 H 0.027 0.973 26 H 0.015 0.985 27 H 0.091 0.909 28 H 0.265 0.735 29 H 0.388 0.612 30 H 0.130 0.870 31 H 0.128 0.872 32 H 0.122 0.878 33 H 0.116 0.884 34 H 0.118 0.882 35 H 0.410 0.590 36 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.855 -5.322 19.828 21.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.162 3.838 3 H 0.068 0.932 4 C -0.573 4.573 5 H 0.080 0.920 6 C -0.137 4.137 7 N -0.520 5.520 8 Si 0.730 3.270 9 H -0.205 1.205 10 H -0.211 1.211 11 H -0.198 1.198 12 N -0.348 5.348 13 C 0.327 3.673 14 O -0.431 6.431 15 C -0.121 4.121 16 C -0.101 4.101 17 C -0.145 4.145 18 C -0.106 4.106 19 C -0.097 4.097 20 C -0.106 4.106 21 C 0.317 3.683 22 O -0.388 6.388 23 O -0.333 6.333 24 C -0.066 4.066 25 H 0.046 0.954 26 H 0.034 0.966 27 H 0.110 0.890 28 H 0.075 0.925 29 H 0.222 0.778 30 H 0.148 0.852 31 H 0.146 0.854 32 H 0.140 0.860 33 H 0.134 0.866 34 H 0.136 0.864 35 H 0.269 0.731 36 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 5.656 -4.480 19.315 20.618 hybrid contribution -0.239 -1.036 -0.583 1.213 sum 5.417 -5.516 18.731 20.264 Atomic orbital electron populations 1.22084 0.98339 0.99208 1.00991 1.18789 0.91118 0.94058 0.79811 0.93186 1.21212 1.32528 1.13262 0.90305 0.92047 1.24890 0.94801 0.94941 0.99061 1.69905 1.35851 1.22381 1.23908 0.86436 0.79164 0.79269 0.82157 1.20531 1.21050 1.19830 1.46494 1.64409 1.13551 1.10392 1.18217 0.78942 0.86805 0.83374 1.90718 1.51611 1.15692 1.85112 1.20286 1.02466 0.94349 0.95040 1.21455 0.96101 0.93596 0.98924 1.21023 1.00743 1.00081 0.92603 1.21069 0.98392 0.93210 0.97926 1.19129 1.02706 0.94378 0.93449 1.20232 0.93405 1.04075 0.92888 1.23451 0.90431 0.75163 0.79254 1.90786 1.40119 1.39232 1.68675 1.84519 1.44163 1.71692 1.32951 1.21094 0.94368 1.00447 0.90736 0.95420 0.96573 0.89049 0.92544 0.77831 0.85205 0.85399 0.85981 0.86629 0.86426 0.73111 0.84797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.78 9.26 37.16 0.34 -3.43 16 2 C 0.26 6.86 2.56 -69.08 -0.18 6.69 16 3 H 0.05 1.49 7.58 -51.93 -0.39 1.10 16 4 C -0.53 -14.30 8.73 -34.44 -0.30 -14.60 16 5 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 6 C 0.07 1.80 5.30 -17.82 -0.09 1.70 16 7 N -0.88 -25.06 11.32 55.43 0.63 -24.43 16 8 Si 0.90 20.69 29.54 -169.99 -5.02 15.67 16 9 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 10 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 12 N -0.70 -15.20 5.02 -55.88 -0.28 -15.48 16 13 C 0.54 11.56 7.74 -12.33 -0.10 11.47 16 14 O -0.55 -13.77 16.01 5.32 0.09 -13.69 16 15 C -0.12 -2.00 5.87 -104.97 -0.62 -2.61 16 16 C -0.08 -1.13 9.54 -39.18 -0.37 -1.50 16 17 C -0.13 -1.43 10.03 -39.64 -0.40 -1.83 16 18 C -0.09 -0.94 9.69 -39.49 -0.38 -1.33 16 19 C -0.10 -1.14 4.37 -104.68 -0.46 -1.60 16 20 C -0.07 -0.58 5.94 -29.04 -0.17 -0.75 16 21 C 0.48 4.85 8.32 36.00 0.30 5.15 16 22 O -0.50 -7.22 16.79 -18.75 -0.31 -7.54 16 23 O -0.52 -3.85 13.42 -39.26 -0.53 -4.38 16 24 C -0.05 -0.72 9.24 -39.19 -0.36 -1.08 16 25 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.09 2.51 6.07 -51.93 -0.32 2.20 16 28 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 29 H 0.39 7.23 6.57 -40.82 -0.27 6.97 16 30 H 0.13 1.61 6.41 -52.48 -0.34 1.27 16 31 H 0.13 1.09 8.06 -52.49 -0.42 0.66 16 32 H 0.12 0.95 8.06 -52.48 -0.42 0.53 16 33 H 0.12 0.63 8.08 -51.93 -0.42 0.21 16 34 H 0.12 0.82 8.08 -51.93 -0.42 0.40 16 35 H 0.41 1.49 9.10 45.56 0.41 1.91 16 36 H 0.13 2.07 7.65 -52.49 -0.40 1.66 16 LS Contribution 318.02 15.07 4.79 4.79 Total: -1.00 -34.78 318.02 -6.80 -41.57 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: -3.37 Total: 7.22 kcal Atomic # 6 Polarization: -0.95 SS G_CDS: -2.79 Total: -3.73 kcal Atomic # 7 Polarization: -40.26 SS G_CDS: 0.35 Total: -39.91 kcal Atomic # 8 Polarization: -24.85 SS G_CDS: -0.76 Total: -25.61 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -34.78 -6.80 -41.57 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592222539.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.727 kcal (2) G-P(sol) polarization free energy of solvation -34.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds