Wall clock time and date at job start Mon Mar 30 2020 02:00:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34777 * 119.99786 * 2 1 4 4 O 1.21277 * 119.99871 * 179.97438 * 3 2 1 5 5 C 1.50707 * 120.00041 * 359.97438 * 3 2 1 6 6 C 1.53002 * 109.46715 * 180.02562 * 5 3 2 7 7 C 1.50707 * 109.46715 * 179.97438 * 6 5 3 8 8 H 1.08001 * 119.99968 * 0.02562 * 7 6 5 9 9 C 1.37868 * 119.99948 * 179.97438 * 7 6 5 10 10 N 1.31516 * 120.00357 * 179.97438 * 9 7 6 11 11 Si 1.86806 * 120.00090 * 359.97438 * 9 7 6 12 12 H 1.48507 * 109.46872 * 89.99856 * 11 9 7 13 13 H 1.48494 * 109.47206 * 209.99735 * 11 9 7 14 14 H 1.48499 * 109.47101 * 330.00044 * 11 9 7 15 15 C 1.39250 * 120.00175 * 179.97438 * 2 1 3 16 16 C 1.38852 * 120.16776 * 89.99845 * 15 2 1 17 17 C 1.38022 * 120.07461 * 179.97438 * 16 15 2 18 18 C 1.38575 * 120.41731 * 0.02562 * 17 16 15 19 19 C 1.37775 * 120.33944 * 359.97438 * 18 17 16 20 20 C 1.39744 * 119.91728 * 359.97438 * 19 18 17 21 21 C 1.47387 * 120.20926 * 179.97438 * 20 19 18 22 22 O 1.21504 * 120.00192 * 180.02562 * 21 20 19 23 23 O 1.34756 * 119.99530 * 0.02562 * 21 20 19 24 24 H 1.09003 * 109.47351 * 270.00369 * 1 2 3 25 25 H 1.08999 * 109.47096 * 30.00413 * 1 2 3 26 26 H 1.09005 * 109.46999 * 150.00044 * 1 2 3 27 27 H 1.08995 * 109.46706 * 299.99992 * 5 3 2 28 28 H 1.09003 * 109.46853 * 60.00149 * 5 3 2 29 29 H 1.09002 * 109.47065 * 299.99640 * 6 5 3 30 30 H 1.08998 * 109.47067 * 60.00510 * 6 5 3 31 31 H 0.96996 * 120.00598 * 179.97438 * 10 9 7 32 32 H 1.07999 * 119.96249 * 359.95863 * 16 15 2 33 33 H 1.07992 * 119.78775 * 180.02562 * 17 16 15 34 34 H 1.08000 * 119.83253 * 180.02562 * 18 17 16 35 35 H 1.08008 * 120.04477 * 179.72133 * 19 18 17 36 36 H 0.96704 * 116.99632 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3516 1.1672 0.0005 5 6 1.3853 2.4724 -0.0006 6 6 2.3796 3.6353 -0.0011 7 6 1.6260 4.9404 -0.0023 8 1 0.5460 4.9404 -0.0023 9 6 2.3153 6.1344 -0.0024 10 7 1.6578 7.2734 -0.0040 11 14 4.1834 6.1345 -0.0004 12 1 4.6799 6.1334 -1.4000 13 1 4.6776 7.3475 0.6992 14 1 4.6777 4.9225 0.7011 15 6 2.1613 -1.2059 0.0005 16 6 2.5102 -1.8108 -1.1996 17 6 3.2008 -3.0058 -1.1969 18 6 3.5507 -3.6111 -0.0004 19 6 3.2132 -3.0260 1.2004 20 6 2.5149 -1.8156 1.2140 21 6 2.1501 -1.1843 2.4949 22 8 1.5426 -0.1321 2.5023 23 8 2.4905 -1.7741 3.6577 24 1 -0.3634 0.0001 1.0277 25 1 -0.3633 0.8899 -0.5139 26 1 -0.3633 -0.8900 -0.5138 27 1 0.7590 2.5298 -0.8908 28 1 0.7583 2.5303 0.8892 29 1 3.0062 3.5779 0.8890 30 1 3.0062 3.5771 -0.8911 31 1 2.1427 8.1134 -0.0037 32 1 2.2406 -1.3457 -2.1364 33 1 3.4702 -3.4719 -2.1330 34 1 4.0914 -4.5460 -0.0093 35 1 3.4843 -3.5042 2.1301 36 1 2.2298 -1.3222 4.4719 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001598013454.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:05 Heat of formation + Delta-G solvation = -89.187757 kcal Electronic energy + Delta-G solvation = -21437.168666 eV Core-core repulsion = 18079.849758 eV Total energy + Delta-G solvation = -3357.318908 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.94299 -39.48387 -38.34391 -36.17213 -35.20046 -33.48203 -31.65599 -31.46579 -30.20793 -26.64405 -26.23616 -24.66088 -23.00102 -21.78859 -20.65496 -18.93287 -18.19916 -17.56774 -17.12400 -16.67803 -15.95950 -15.89102 -15.53684 -15.10592 -14.61048 -14.37833 -14.03888 -13.42602 -13.22568 -13.11451 -12.79741 -12.52772 -12.43153 -12.30562 -12.08718 -11.66967 -11.55845 -11.32708 -10.92339 -10.59319 -10.10364 -9.98003 -9.74930 -9.34246 -9.29985 -9.13783 -8.97770 -8.66501 -8.46564 -5.99084 -3.97228 0.46799 1.03231 2.46992 2.88800 3.07048 3.18953 3.40557 3.46828 3.51388 3.59218 4.54775 4.57553 4.69104 4.78289 5.04875 5.11825 5.22354 5.35585 5.36307 5.37056 5.54328 5.64161 5.83735 5.89784 6.10240 6.11790 6.15348 6.24472 6.37477 6.40821 6.72181 6.95643 7.41377 7.49428 7.54271 7.83346 7.83806 8.53422 8.65454 9.04131 9.64294 11.13820 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.023524 B = 0.004682 C = 0.004538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.973158 B = 5978.604885 C = 6167.996128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.586 5.586 3 C 0.528 3.472 4 O -0.534 6.534 5 C -0.115 4.115 6 C 0.002 3.998 7 C -0.522 4.522 8 H 0.073 0.927 9 C 0.069 3.931 10 N -0.904 5.904 11 Si 0.876 3.124 12 H -0.277 1.277 13 H -0.288 1.288 14 H -0.262 1.262 15 C 0.217 3.783 16 C -0.125 4.125 17 C -0.076 4.076 18 C -0.136 4.136 19 C -0.058 4.058 20 C -0.128 4.128 21 C 0.521 3.479 22 O -0.488 6.488 23 O -0.518 6.518 24 H 0.063 0.937 25 H 0.084 0.916 26 H 0.064 0.936 27 H 0.086 0.914 28 H 0.090 0.910 29 H 0.023 0.977 30 H 0.018 0.982 31 H 0.263 0.737 32 H 0.135 0.865 33 H 0.133 0.867 34 H 0.133 0.867 35 H 0.140 0.860 36 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.755 -25.449 1.193 25.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.319 5.319 3 C 0.320 3.680 4 O -0.409 6.409 5 C -0.155 4.155 6 C -0.036 4.036 7 C -0.560 4.560 8 H 0.091 0.909 9 C -0.132 4.132 10 N -0.543 5.543 11 Si 0.703 3.297 12 H -0.202 1.202 13 H -0.214 1.214 14 H -0.186 1.186 15 C 0.126 3.874 16 C -0.144 4.144 17 C -0.095 4.095 18 C -0.154 4.154 19 C -0.077 4.077 20 C -0.130 4.130 21 C 0.364 3.636 22 O -0.376 6.376 23 O -0.330 6.330 24 H 0.081 0.919 25 H 0.102 0.898 26 H 0.083 0.917 27 H 0.104 0.896 28 H 0.109 0.891 29 H 0.041 0.959 30 H 0.036 0.964 31 H 0.072 0.928 32 H 0.153 0.847 33 H 0.151 0.849 34 H 0.151 0.849 35 H 0.158 0.842 36 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges -0.151 -25.091 0.837 25.106 hybrid contribution 0.718 0.397 0.606 1.021 sum 0.567 -24.694 1.443 24.743 Atomic orbital electron populations 1.21816 0.77936 1.03067 1.02646 1.45394 1.07163 1.03281 1.76067 1.21586 0.88205 0.84987 0.73218 1.90649 1.14519 1.87162 1.48527 1.21669 1.00230 0.90262 1.03322 1.19386 0.94473 0.92211 0.97557 1.21104 0.94984 0.88795 1.51087 0.90876 1.24950 0.98386 0.95443 0.94380 1.69910 1.35767 0.97385 1.51277 0.86816 0.86379 0.77776 0.78727 1.20229 1.21427 1.18595 1.17531 0.92402 0.86386 0.91100 1.21409 0.99528 0.95985 0.97524 1.21320 0.95200 0.94255 0.98697 1.21165 1.01356 1.00918 0.91991 1.21381 0.94112 0.92914 0.99251 1.19440 1.05679 0.97743 0.90165 1.20687 0.76310 0.82533 0.84115 1.90948 1.37212 1.21641 1.87757 1.84525 1.76142 1.55334 1.17008 0.91874 0.89764 0.91741 0.89617 0.89134 0.95897 0.96364 0.92760 0.84679 0.84916 0.84939 0.84248 0.72774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.08 9.88 59.85 0.59 1.67 16 2 N -0.59 -9.46 1.52 -120.59 -0.18 -9.64 16 3 C 0.53 10.83 6.72 -10.98 -0.07 10.76 16 4 O -0.53 -12.91 15.95 5.56 0.09 -12.82 16 5 C -0.12 -2.44 4.19 -27.88 -0.12 -2.56 16 6 C 0.00 0.04 3.33 -27.88 -0.09 -0.05 16 7 C -0.52 -15.40 9.66 -34.44 -0.33 -15.74 16 8 H 0.07 2.24 7.99 -52.49 -0.42 1.82 16 9 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 10 N -0.90 -28.55 13.96 55.43 0.77 -27.77 16 11 Si 0.88 23.23 27.47 -169.99 -4.67 18.56 16 12 H -0.28 -7.18 7.11 56.52 0.40 -6.77 16 13 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 14 H -0.26 -6.99 6.54 56.52 0.37 -6.62 16 15 C 0.22 3.17 4.44 -83.48 -0.37 2.80 16 16 C -0.13 -1.49 9.96 -39.43 -0.39 -1.88 16 17 C -0.08 -0.69 10.03 -39.54 -0.40 -1.09 16 18 C -0.14 -1.17 10.02 -39.63 -0.40 -1.56 16 19 C -0.06 -0.60 9.61 -39.19 -0.38 -0.98 16 20 C -0.13 -1.75 5.89 -104.83 -0.62 -2.36 16 21 C 0.52 7.50 8.26 34.45 0.28 7.79 16 22 O -0.49 -8.54 13.90 -19.27 -0.27 -8.81 16 23 O -0.52 -5.44 12.68 -40.65 -0.52 -5.95 16 24 H 0.06 0.81 7.18 -51.93 -0.37 0.44 16 25 H 0.08 0.98 6.44 -51.93 -0.33 0.65 16 26 H 0.06 0.62 8.05 -51.93 -0.42 0.20 16 27 H 0.09 1.63 7.40 -51.93 -0.38 1.24 16 28 H 0.09 1.87 8.11 -51.93 -0.42 1.45 16 29 H 0.02 0.64 7.15 -51.93 -0.37 0.26 16 30 H 0.02 0.49 7.53 -51.93 -0.39 0.10 16 31 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 32 H 0.14 1.47 8.06 -52.49 -0.42 1.05 16 33 H 0.13 0.81 8.06 -52.49 -0.42 0.38 16 34 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16 35 H 0.14 1.17 7.61 -52.48 -0.40 0.77 16 36 H 0.41 2.66 9.11 45.56 0.42 3.07 16 LS Contribution 312.74 15.07 4.71 4.71 Total: -1.00 -38.21 312.74 -5.98 -44.19 By element: Atomic # 1 Polarization: 2.26 SS G_CDS: -3.53 Total: -1.27 kcal Atomic # 6 Polarization: 1.20 SS G_CDS: -2.39 Total: -1.19 kcal Atomic # 7 Polarization: -38.01 SS G_CDS: 0.59 Total: -37.42 kcal Atomic # 8 Polarization: -26.89 SS G_CDS: -0.69 Total: -27.59 kcal Atomic # 14 Polarization: 23.23 SS G_CDS: -4.67 Total: 18.56 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -38.21 -5.98 -44.19 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001598013454.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.000 kcal (2) G-P(sol) polarization free energy of solvation -38.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds