Wall clock time and date at job start Mon Mar 30 2020 02:00:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34777 * 119.99786 * 2 1 4 4 O 1.21277 * 119.99871 * 179.97438 * 3 2 1 5 5 C 1.50707 * 120.00041 * 359.97438 * 3 2 1 6 6 C 1.53002 * 109.46715 * 180.02562 * 5 3 2 7 7 C 1.50707 * 109.46715 * 179.97438 * 6 5 3 8 8 H 1.08001 * 119.99968 * 0.02562 * 7 6 5 9 9 C 1.37868 * 119.99948 * 179.97438 * 7 6 5 10 10 N 1.31516 * 120.00357 * 179.97438 * 9 7 6 11 11 Si 1.86806 * 120.00090 * 359.97438 * 9 7 6 12 12 H 1.48507 * 109.46872 * 89.99856 * 11 9 7 13 13 H 1.48494 * 109.47206 * 209.99735 * 11 9 7 14 14 H 1.48499 * 109.47101 * 330.00044 * 11 9 7 15 15 C 1.39250 * 120.00175 * 179.97438 * 2 1 3 16 16 C 1.38852 * 120.16776 * 89.99845 * 15 2 1 17 17 C 1.38022 * 120.07461 * 179.97438 * 16 15 2 18 18 C 1.38575 * 120.41731 * 0.02562 * 17 16 15 19 19 C 1.37775 * 120.33944 * 359.97438 * 18 17 16 20 20 C 1.39744 * 119.91728 * 359.97438 * 19 18 17 21 21 C 1.47387 * 120.20926 * 179.97438 * 20 19 18 22 22 O 1.21504 * 120.00192 * 180.02562 * 21 20 19 23 23 O 1.34756 * 119.99530 * 0.02562 * 21 20 19 24 24 H 1.09003 * 109.47351 * 270.00369 * 1 2 3 25 25 H 1.08999 * 109.47096 * 30.00413 * 1 2 3 26 26 H 1.09005 * 109.46999 * 150.00044 * 1 2 3 27 27 H 1.08995 * 109.46706 * 299.99992 * 5 3 2 28 28 H 1.09003 * 109.46853 * 60.00149 * 5 3 2 29 29 H 1.09002 * 109.47065 * 299.99640 * 6 5 3 30 30 H 1.08998 * 109.47067 * 60.00510 * 6 5 3 31 31 H 0.96996 * 120.00598 * 179.97438 * 10 9 7 32 32 H 1.07999 * 119.96249 * 359.95863 * 16 15 2 33 33 H 1.07992 * 119.78775 * 180.02562 * 17 16 15 34 34 H 1.08000 * 119.83253 * 180.02562 * 18 17 16 35 35 H 1.08008 * 120.04477 * 179.72133 * 19 18 17 36 36 H 0.96704 * 116.99632 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3516 1.1672 0.0005 5 6 1.3853 2.4724 -0.0006 6 6 2.3796 3.6353 -0.0011 7 6 1.6260 4.9404 -0.0023 8 1 0.5460 4.9404 -0.0023 9 6 2.3153 6.1344 -0.0024 10 7 1.6578 7.2734 -0.0040 11 14 4.1834 6.1345 -0.0004 12 1 4.6799 6.1334 -1.4000 13 1 4.6776 7.3475 0.6992 14 1 4.6777 4.9225 0.7011 15 6 2.1613 -1.2059 0.0005 16 6 2.5102 -1.8108 -1.1996 17 6 3.2008 -3.0058 -1.1969 18 6 3.5507 -3.6111 -0.0004 19 6 3.2132 -3.0260 1.2004 20 6 2.5149 -1.8156 1.2140 21 6 2.1501 -1.1843 2.4949 22 8 1.5426 -0.1321 2.5023 23 8 2.4905 -1.7741 3.6577 24 1 -0.3634 0.0001 1.0277 25 1 -0.3633 0.8899 -0.5139 26 1 -0.3633 -0.8900 -0.5138 27 1 0.7590 2.5298 -0.8908 28 1 0.7583 2.5303 0.8892 29 1 3.0062 3.5779 0.8890 30 1 3.0062 3.5771 -0.8911 31 1 2.1427 8.1134 -0.0037 32 1 2.2406 -1.3457 -2.1364 33 1 3.4702 -3.4719 -2.1330 34 1 4.0914 -4.5460 -0.0093 35 1 3.4843 -3.5042 2.1301 36 1 2.2298 -1.3222 4.4719 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001598013454.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:04 Heat of formation + Delta-G solvation = -115.519562 kcal Electronic energy + Delta-G solvation = -21438.310499 eV Core-core repulsion = 18079.849758 eV Total energy + Delta-G solvation = -3358.460740 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.03529 -40.70939 -39.40341 -37.22643 -36.43793 -35.62055 -33.44930 -32.48249 -31.33061 -28.25259 -27.61907 -25.69226 -24.23926 -23.05443 -22.07375 -20.34617 -19.22847 -19.13617 -18.57770 -17.89401 -17.40845 -17.12119 -16.64861 -16.25389 -15.98589 -15.86808 -15.35954 -14.85491 -14.58959 -14.55468 -14.23941 -13.85880 -13.64555 -13.55047 -13.25444 -12.98891 -12.90385 -12.59406 -12.44165 -12.13347 -12.01636 -11.81719 -11.67452 -11.44387 -10.89699 -10.80783 -10.13042 -9.92695 -9.88653 -8.34207 -6.37239 -0.42753 0.21149 1.29526 1.31252 1.47346 1.50100 1.56161 1.91203 2.04689 2.32465 2.67297 3.00800 3.73192 3.80554 4.03005 4.04727 4.14901 4.29905 4.34142 4.35282 4.40927 4.55178 4.62371 4.81036 4.87778 4.94144 5.16874 5.26285 5.31378 5.37156 5.38906 5.52089 5.56045 5.57247 5.91706 6.16284 6.22643 6.67678 6.90823 7.14992 7.27907 8.81562 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.023524 B = 0.004682 C = 0.004538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.973158 B = 5978.604885 C = 6167.996128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.573 5.573 3 C 0.528 3.472 4 O -0.581 6.581 5 C -0.109 4.109 6 C 0.009 3.991 7 C -0.529 4.529 8 H 0.051 0.949 9 C 0.017 3.983 10 N -0.941 5.941 11 Si 0.937 3.063 12 H -0.263 1.263 13 H -0.274 1.274 14 H -0.269 1.269 15 C 0.176 3.824 16 C -0.136 4.136 17 C -0.065 4.065 18 C -0.123 4.123 19 C -0.055 4.055 20 C -0.156 4.156 21 C 0.518 3.482 22 O -0.533 6.533 23 O -0.504 6.504 24 H 0.056 0.944 25 H 0.089 0.911 26 H 0.096 0.904 27 H 0.107 0.893 28 H 0.092 0.908 29 H 0.001 0.999 30 H 0.011 0.989 31 H 0.269 0.731 32 H 0.139 0.861 33 H 0.170 0.830 34 H 0.174 0.826 35 H 0.159 0.841 36 H 0.430 0.570 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.385 -28.501 0.499 28.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.302 5.302 3 C 0.320 3.680 4 O -0.460 6.460 5 C -0.148 4.148 6 C -0.029 4.029 7 C -0.567 4.567 8 H 0.069 0.931 9 C -0.181 4.181 10 N -0.581 5.581 11 Si 0.761 3.239 12 H -0.188 1.188 13 H -0.199 1.199 14 H -0.193 1.193 15 C 0.086 3.914 16 C -0.156 4.156 17 C -0.083 4.083 18 C -0.141 4.141 19 C -0.074 4.074 20 C -0.159 4.159 21 C 0.363 3.637 22 O -0.424 6.424 23 O -0.318 6.318 24 H 0.075 0.925 25 H 0.107 0.893 26 H 0.115 0.885 27 H 0.125 0.875 28 H 0.110 0.890 29 H 0.020 0.980 30 H 0.030 0.970 31 H 0.078 0.922 32 H 0.157 0.843 33 H 0.187 0.813 34 H 0.191 0.809 35 H 0.177 0.823 36 H 0.292 0.708 Dipole moment (debyes) X Y Z Total from point charges 0.948 -28.198 0.161 28.214 hybrid contribution 0.302 1.190 0.859 1.498 sum 1.250 -27.008 1.020 27.056 Atomic orbital electron populations 1.22031 0.76105 1.04936 1.02838 1.45171 1.08343 1.02929 1.73803 1.21221 0.87492 0.85975 0.73295 1.90608 1.16134 1.87965 1.51302 1.21470 0.99235 0.89652 1.04477 1.19197 0.94852 0.92758 0.96055 1.21368 0.94319 0.90435 1.50589 0.93093 1.25755 1.03028 0.95154 0.94126 1.70011 1.37696 0.98113 1.52321 0.85857 0.80872 0.77789 0.79375 1.18834 1.19948 1.19339 1.17892 0.94550 0.86268 0.92701 1.21583 1.00134 0.97219 0.96624 1.21776 0.93083 0.92786 1.00647 1.21671 0.99821 1.01737 0.90850 1.21693 0.92923 0.91634 1.01128 1.19612 1.07456 0.99415 0.89395 1.21035 0.75405 0.81987 0.85266 1.90921 1.39485 1.23543 1.88462 1.84481 1.75438 1.54872 1.17024 0.92496 0.89252 0.88507 0.87456 0.89015 0.98022 0.97020 0.92243 0.84316 0.81256 0.80876 0.82317 0.70840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.99 9.88 127.77 1.26 3.25 16 2 N -0.57 -18.49 1.52 -653.82 -0.99 -19.48 16 3 C 0.53 22.10 6.72 87.66 0.59 22.69 16 4 O -0.58 -28.80 15.95 -3.02 -0.05 -28.85 16 5 C -0.11 -4.72 4.19 29.85 0.13 -4.59 16 6 C 0.01 0.50 3.33 29.85 0.10 0.60 16 7 C -0.53 -32.03 9.66 25.60 0.25 -31.78 16 8 H 0.05 3.23 7.99 -2.91 -0.02 3.20 16 9 C 0.02 1.06 5.47 84.65 0.46 1.53 16 10 N -0.94 -60.22 13.96 21.44 0.30 -59.93 16 11 Si 0.94 48.46 27.47 68.60 1.88 50.34 16 12 H -0.26 -13.01 7.11 99.48 0.71 -12.30 16 13 H -0.27 -13.47 7.11 99.48 0.71 -12.77 16 14 H -0.27 -14.14 6.54 99.48 0.65 -13.49 16 15 C 0.18 5.02 4.44 38.62 0.17 5.19 16 16 C -0.14 -2.97 9.96 22.37 0.22 -2.75 16 17 C -0.06 -0.92 10.03 22.30 0.22 -0.69 16 18 C -0.12 -1.56 10.02 22.24 0.22 -1.34 16 19 C -0.06 -0.99 9.61 22.52 0.22 -0.77 16 20 C -0.16 -4.13 5.89 -20.00 -0.12 -4.24 16 21 C 0.52 14.90 8.26 70.23 0.58 15.48 16 22 O -0.53 -19.21 13.90 19.82 0.28 -18.93 16 23 O -0.50 -10.09 12.68 -56.67 -0.72 -10.81 16 24 H 0.06 1.48 7.18 -2.39 -0.02 1.46 16 25 H 0.09 2.05 6.44 -2.39 -0.02 2.03 16 26 H 0.10 1.71 8.05 -2.38 -0.02 1.69 16 27 H 0.11 4.10 7.40 -2.39 -0.02 4.08 16 28 H 0.09 3.91 8.11 -2.39 -0.02 3.89 16 29 H 0.00 0.08 7.15 -2.39 -0.02 0.06 16 30 H 0.01 0.63 7.53 -2.39 -0.02 0.61 16 31 H 0.27 15.99 8.31 -92.71 -0.77 15.22 16 32 H 0.14 2.80 8.06 -2.91 -0.02 2.77 16 33 H 0.17 1.15 8.06 -2.91 -0.02 1.13 16 34 H 0.17 0.83 8.06 -2.91 -0.02 0.80 16 35 H 0.16 2.12 7.61 -2.91 -0.02 2.10 16 36 H 0.43 5.19 9.11 -74.05 -0.67 4.51 16 Total: -1.00 -85.44 312.74 5.39 -80.05 By element: Atomic # 1 Polarization: 4.65 SS G_CDS: 0.38 Total: 5.03 kcal Atomic # 6 Polarization: -1.73 SS G_CDS: 4.31 Total: 2.58 kcal Atomic # 7 Polarization: -78.72 SS G_CDS: -0.69 Total: -79.41 kcal Atomic # 8 Polarization: -58.11 SS G_CDS: -0.49 Total: -58.60 kcal Atomic # 14 Polarization: 48.46 SS G_CDS: 1.88 Total: 50.34 kcal Total: -85.44 5.39 -80.05 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001598013454.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.469 kcal (2) G-P(sol) polarization free energy of solvation -85.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds