Wall clock time and date at job start Mon Mar 30 2020 02:00:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.36928 * 119.99939 * 2 1 4 4 H 1.07998 * 120.00015 * 202.58758 * 3 2 1 5 5 C 1.38817 * 120.00298 * 22.58663 * 3 2 1 6 6 N 1.31617 * 119.99745 * 11.16059 * 5 3 2 7 7 Si 1.86800 * 119.99999 * 191.16743 * 5 3 2 8 8 H 1.48507 * 109.47113 * 359.97438 * 7 5 3 9 9 H 1.48495 * 109.47204 * 119.99581 * 7 5 3 10 10 H 1.48500 * 109.46982 * 239.99869 * 7 5 3 11 11 C 1.46503 * 119.99752 * 179.97438 * 2 1 3 12 12 C 1.50701 * 109.47139 * 270.00012 * 11 2 1 13 13 C 1.38005 * 119.95460 * 105.00209 * 12 11 2 14 14 C 1.39295 * 119.90893 * 180.02562 * 13 12 11 15 15 C 1.48450 * 120.09143 * 180.02562 * 14 13 12 16 16 N 1.34049 * 126.67282 * 359.66686 * 15 14 13 17 17 N 1.28984 * 107.26501 * 179.86725 * 16 15 14 18 18 N 1.28726 * 108.94861 * 0.39841 * 17 16 15 19 19 H 0.97004 * 125.34712 * 179.76707 * 18 17 16 20 20 N 1.28875 * 109.31360 * 359.74344 * 18 17 16 21 21 C 1.39333 * 119.81417 * 359.97438 * 14 13 12 22 22 C 1.37956 * 119.91051 * 0.02562 * 21 14 13 23 23 C 1.38524 * 119.95305 * 284.98071 * 12 11 2 24 24 F 1.35090 * 119.91014 * 359.97438 * 23 12 11 25 25 H 1.08999 * 109.47062 * 274.24932 * 1 2 3 26 26 H 1.08998 * 109.46727 * 34.24844 * 1 2 3 27 27 H 1.09002 * 109.46877 * 154.25024 * 1 2 3 28 28 H 0.97001 * 119.99573 * 180.02562 * 6 5 3 29 29 H 1.09000 * 109.47111 * 150.00342 * 11 2 1 30 30 H 1.09001 * 109.46985 * 29.99788 * 11 2 1 31 31 H 1.08001 * 120.04188 * 0.02562 * 13 12 11 32 32 H 1.08003 * 120.04293 * 179.72607 * 21 14 13 33 33 H 1.07997 * 119.95729 * 179.97438 * 22 21 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.1676 1.2217 -0.3592 5 6 1.5355 2.3420 0.4617 6 7 0.3864 2.2671 1.0991 7 14 2.3399 4.0039 0.1783 8 1 3.6167 3.8170 -0.5567 9 1 1.4302 4.8644 -0.6199 10 1 2.6125 4.6514 1.4866 11 6 2.1975 -1.2688 0.0006 12 6 2.4487 -1.7032 1.4216 13 6 1.7092 -2.7320 1.9685 14 6 1.9417 -3.1324 3.2823 15 6 1.1490 -4.2391 3.8745 16 7 0.1771 -4.9390 3.2725 17 7 -0.2536 -5.8066 4.1242 18 7 0.3992 -5.6711 5.2254 19 1 0.2645 -6.2012 6.0265 20 7 1.2601 -4.7208 5.0964 21 6 2.9212 -2.4921 4.0386 22 6 3.6560 -1.4645 3.4842 23 6 3.4218 -1.0695 2.1768 24 9 4.1442 -0.0635 1.6374 25 1 -0.3633 0.0761 1.0248 26 1 -0.3633 0.8495 -0.5784 27 1 -0.3633 -0.9256 -0.4465 28 1 -0.0429 3.0750 1.4214 29 1 3.1500 -1.1387 -0.5133 30 1 1.6084 -2.0286 -0.5129 31 1 0.9512 -3.2260 1.3787 32 1 3.1016 -2.7966 5.0590 33 1 4.4151 -0.9674 4.0699 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001604708322.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:24 Heat of formation + Delta-G solvation = 131.241044 kcal Electronic energy + Delta-G solvation = -20954.017526 eV Core-core repulsion = 17547.382326 eV Total energy + Delta-G solvation = -3406.635200 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.103 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -48.09209 -44.40259 -38.73786 -35.61071 -34.31134 -33.39579 -31.99490 -30.33090 -29.75961 -26.19485 -25.60999 -24.54370 -24.13960 -22.10579 -21.63723 -20.16451 -19.10559 -17.09880 -16.97133 -16.76901 -15.98634 -15.63577 -15.01805 -14.58519 -14.17208 -13.67509 -13.49889 -13.19183 -13.14629 -12.67892 -12.45936 -12.30667 -11.99345 -11.68037 -11.31747 -11.15486 -11.07631 -10.89837 -10.65991 -10.61934 -10.48146 -10.27048 -9.94405 -9.85828 -8.56787 -8.51900 -7.98719 -6.79555 -5.72417 -3.15975 0.86937 1.27864 1.66939 2.24063 2.50378 3.39946 3.47126 3.49608 3.78694 4.03672 4.27946 4.53720 4.85847 5.17633 5.23762 5.35756 5.47153 5.50175 5.63645 5.68120 5.83558 6.08812 6.28640 6.32905 6.41664 6.54424 6.60139 6.68002 6.79128 6.89987 7.31754 7.40374 7.76055 7.85844 8.18676 8.38814 9.23322 9.84210 10.32491 11.32188 Molecular weight = 277.10amu Principal moments of inertia in cm(-1) A = 0.026823 B = 0.004875 C = 0.004567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.632365 B = 5742.301396 C = 6129.213758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.162 3.838 2 N -0.589 5.589 3 C -0.245 4.245 4 H 0.074 0.926 5 C 0.003 3.997 6 N -0.905 5.905 7 Si 0.904 3.096 8 H -0.276 1.276 9 H -0.290 1.290 10 H -0.290 1.290 11 C 0.181 3.819 12 C -0.124 4.124 13 C -0.045 4.045 14 C -0.049 4.049 15 C 0.237 3.763 16 N -0.268 5.268 17 N -0.055 5.055 18 N -0.234 5.234 19 H 0.473 0.527 20 N -0.303 5.303 21 C -0.068 4.068 22 C -0.167 4.167 23 C 0.150 3.850 24 F -0.120 7.120 25 H 0.029 0.971 26 H 0.048 0.952 27 H 0.000 1.000 28 H 0.252 0.748 29 H 0.059 0.941 30 H 0.056 0.944 31 H 0.136 0.864 32 H 0.131 0.869 33 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.895 -14.118 7.320 16.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.309 5.309 3 C -0.374 4.374 4 H 0.092 0.908 5 C -0.196 4.196 6 N -0.550 5.550 7 Si 0.734 3.266 8 H -0.201 1.201 9 H -0.216 1.216 10 H -0.217 1.217 11 C 0.053 3.947 12 C -0.129 4.129 13 C -0.067 4.067 14 C -0.052 4.052 15 C -0.042 4.042 16 N -0.141 5.141 17 N -0.050 5.050 18 N -0.079 5.079 19 H 0.326 0.674 20 N -0.154 5.154 21 C -0.089 4.089 22 C -0.186 4.186 23 C 0.129 3.871 24 F -0.098 7.098 25 H 0.047 0.953 26 H 0.067 0.933 27 H 0.019 0.981 28 H 0.062 0.938 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.154 0.846 32 H 0.149 0.851 33 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 2.303 -14.372 7.294 16.280 hybrid contribution 0.588 1.220 0.796 1.571 sum 2.891 -13.152 8.090 15.709 Atomic orbital electron populations 1.20860 0.82011 0.95886 0.99500 1.44228 1.02134 1.00279 1.84237 1.19338 0.98339 0.84808 1.34950 0.90829 1.25067 0.97621 0.98667 0.98219 1.70088 1.17783 1.27073 1.40023 0.86183 0.78796 0.84191 0.77455 1.20121 1.21640 1.21733 1.19977 0.97110 0.89091 0.88493 1.21294 0.94377 0.94725 1.02535 1.20858 0.97821 0.95052 0.92937 1.17144 0.98321 0.95154 0.94630 1.23739 0.95497 0.98091 0.86883 1.76111 1.10670 1.04307 1.23016 1.78878 1.17266 1.17866 0.91029 1.47684 1.22162 1.23707 1.14347 0.67389 1.74921 1.14690 1.05041 1.20770 1.20705 0.94152 0.94747 0.99300 1.20964 1.03251 0.99989 0.94405 1.17684 0.91398 0.86432 0.91617 1.91548 1.75234 1.57125 1.85937 0.95276 0.93339 0.98139 0.93780 0.92250 0.92526 0.84626 0.85070 0.84866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.99 9.01 59.85 0.54 4.53 16 2 N -0.59 -14.65 2.91 -182.49 -0.53 -15.18 16 3 C -0.24 -6.64 8.27 -15.06 -0.12 -6.77 16 4 H 0.07 1.99 7.66 -52.49 -0.40 1.59 16 5 C 0.00 0.07 5.13 -17.43 -0.09 -0.01 16 6 N -0.91 -26.45 10.59 55.49 0.59 -25.87 16 7 Si 0.90 22.07 29.57 -169.99 -5.03 17.04 16 8 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 9 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 10 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 11 C 0.18 3.68 5.56 -5.19 -0.03 3.66 16 12 C -0.12 -2.39 5.46 -104.60 -0.57 -2.97 16 13 C -0.05 -0.78 9.32 -39.27 -0.37 -1.15 16 14 C -0.05 -0.78 5.88 -104.89 -0.62 -1.40 16 15 C 0.24 3.59 7.93 -156.31 -1.24 2.35 16 16 N -0.27 -4.12 12.23 32.15 0.39 -3.73 16 17 N -0.06 -0.70 13.47 60.35 0.81 0.11 16 18 N -0.23 -2.28 7.90 60.35 0.48 -1.80 16 19 H 0.47 2.09 8.96 -340.36 -3.05 -0.96 16 20 N -0.30 -3.84 12.08 32.17 0.39 -3.45 16 21 C -0.07 -1.02 9.70 -39.28 -0.38 -1.40 16 22 C -0.17 -2.71 10.01 -39.56 -0.40 -3.11 16 23 C 0.15 2.91 7.21 -39.35 -0.28 2.63 16 24 F -0.12 -2.58 15.16 2.25 0.03 -2.55 16 25 H 0.03 0.78 7.41 -51.93 -0.38 0.40 16 26 H 0.05 1.28 7.20 -51.93 -0.37 0.90 16 27 H 0.00 0.00 7.84 -51.93 -0.41 -0.41 16 28 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 29 H 0.06 1.18 7.97 -51.93 -0.41 0.77 16 30 H 0.06 1.02 7.67 -51.93 -0.40 0.62 16 31 H 0.14 2.22 7.82 -52.49 -0.41 1.81 16 32 H 0.13 1.66 7.88 -52.48 -0.41 1.24 16 33 H 0.13 1.84 8.06 -52.49 -0.42 1.42 16 LS Contribution 295.49 15.07 4.45 4.45 Total: -1.00 -32.26 295.49 -7.78 -40.04 By element: Atomic # 1 Polarization: 0.39 SS G_CDS: -5.81 Total: -5.42 kcal Atomic # 6 Polarization: -0.09 SS G_CDS: -3.56 Total: -3.65 kcal Atomic # 7 Polarization: -52.05 SS G_CDS: 2.13 Total: -49.92 kcal Atomic # 9 Polarization: -2.58 SS G_CDS: 0.03 Total: -2.55 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.03 Total: 17.04 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -32.26 -7.78 -40.04 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604708322.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.284 kcal (2) G-P(sol) polarization free energy of solvation -32.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 139.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.042 kcal (6) G-S(sol) free energy of system = (1) + (5) 131.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds