Wall clock time and date at job start Mon Mar 30 2020 02:00:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.36928 * 119.99939 * 2 1 4 4 H 1.07998 * 120.00015 * 202.58758 * 3 2 1 5 5 C 1.38817 * 120.00298 * 22.58663 * 3 2 1 6 6 N 1.31617 * 119.99745 * 11.16059 * 5 3 2 7 7 Si 1.86800 * 119.99999 * 191.16743 * 5 3 2 8 8 H 1.48507 * 109.47113 * 359.97438 * 7 5 3 9 9 H 1.48495 * 109.47204 * 119.99581 * 7 5 3 10 10 H 1.48500 * 109.46982 * 239.99869 * 7 5 3 11 11 C 1.46503 * 119.99752 * 179.97438 * 2 1 3 12 12 C 1.50701 * 109.47139 * 270.00012 * 11 2 1 13 13 C 1.38005 * 119.95460 * 105.00209 * 12 11 2 14 14 C 1.39295 * 119.90893 * 180.02562 * 13 12 11 15 15 C 1.48450 * 120.09143 * 180.02562 * 14 13 12 16 16 N 1.34049 * 126.67282 * 359.66686 * 15 14 13 17 17 N 1.28984 * 107.26501 * 179.86725 * 16 15 14 18 18 N 1.28726 * 108.94861 * 0.39841 * 17 16 15 19 19 H 0.97004 * 125.34712 * 179.76707 * 18 17 16 20 20 N 1.28875 * 109.31360 * 359.74344 * 18 17 16 21 21 C 1.39333 * 119.81417 * 359.97438 * 14 13 12 22 22 C 1.37956 * 119.91051 * 0.02562 * 21 14 13 23 23 C 1.38524 * 119.95305 * 284.98071 * 12 11 2 24 24 F 1.35090 * 119.91014 * 359.97438 * 23 12 11 25 25 H 1.08999 * 109.47062 * 274.24932 * 1 2 3 26 26 H 1.08998 * 109.46727 * 34.24844 * 1 2 3 27 27 H 1.09002 * 109.46877 * 154.25024 * 1 2 3 28 28 H 0.97001 * 119.99573 * 180.02562 * 6 5 3 29 29 H 1.09000 * 109.47111 * 150.00342 * 11 2 1 30 30 H 1.09001 * 109.46985 * 29.99788 * 11 2 1 31 31 H 1.08001 * 120.04188 * 0.02562 * 13 12 11 32 32 H 1.08003 * 120.04293 * 179.72607 * 21 14 13 33 33 H 1.07997 * 119.95729 * 179.97438 * 22 21 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.1676 1.2217 -0.3592 5 6 1.5355 2.3420 0.4617 6 7 0.3864 2.2671 1.0991 7 14 2.3399 4.0039 0.1783 8 1 3.6167 3.8170 -0.5567 9 1 1.4302 4.8644 -0.6199 10 1 2.6125 4.6514 1.4866 11 6 2.1975 -1.2688 0.0006 12 6 2.4487 -1.7032 1.4216 13 6 1.7092 -2.7320 1.9685 14 6 1.9417 -3.1324 3.2823 15 6 1.1490 -4.2391 3.8745 16 7 0.1771 -4.9390 3.2725 17 7 -0.2536 -5.8066 4.1242 18 7 0.3992 -5.6711 5.2254 19 1 0.2645 -6.2012 6.0265 20 7 1.2601 -4.7208 5.0964 21 6 2.9212 -2.4921 4.0386 22 6 3.6560 -1.4645 3.4842 23 6 3.4218 -1.0695 2.1768 24 9 4.1442 -0.0635 1.6374 25 1 -0.3633 0.0761 1.0248 26 1 -0.3633 0.8495 -0.5784 27 1 -0.3633 -0.9256 -0.4465 28 1 -0.0429 3.0750 1.4214 29 1 3.1500 -1.1387 -0.5133 30 1 1.6084 -2.0286 -0.5129 31 1 0.9512 -3.2260 1.3787 32 1 3.1016 -2.7966 5.0590 33 1 4.4151 -0.9674 4.0699 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001604708322.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:23 Heat of formation + Delta-G solvation = 110.332289 kcal Electronic energy + Delta-G solvation = -20954.924198 eV Core-core repulsion = 17547.382326 eV Total energy + Delta-G solvation = -3407.541872 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.103 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -49.63918 -45.42923 -40.09865 -37.42207 -35.37074 -34.59165 -33.67938 -31.96651 -31.10569 -28.02979 -27.42116 -25.64204 -25.33584 -23.63404 -23.14307 -21.62474 -20.12343 -18.74635 -18.38465 -18.10720 -17.34969 -17.13031 -16.71687 -16.30271 -15.44780 -15.35147 -15.00781 -14.96257 -14.61662 -14.07557 -13.85784 -13.61446 -13.54357 -13.12298 -12.85963 -12.81431 -12.50110 -12.38701 -12.33503 -12.16885 -11.96750 -11.83167 -11.78335 -11.66744 -10.61667 -9.89076 -9.35478 -8.79395 -7.79639 -5.26332 -0.32283 0.19767 0.34372 1.27933 1.45548 1.46366 1.47608 1.57665 2.52194 2.66085 2.73483 3.17776 3.35993 3.49975 3.81550 3.91736 3.97031 4.17324 4.26359 4.40289 4.52390 4.65216 4.87771 4.94696 5.01383 5.04790 5.22756 5.34953 5.38584 5.46617 5.66055 5.68944 5.76260 5.93925 6.35732 7.14713 7.18440 7.87446 8.30747 9.24075 Molecular weight = 277.10amu Principal moments of inertia in cm(-1) A = 0.026823 B = 0.004875 C = 0.004567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.632365 B = 5742.301396 C = 6129.213758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.178 3.822 2 N -0.606 5.606 3 C -0.241 4.241 4 H 0.070 0.930 5 C -0.051 4.051 6 N -0.939 5.939 7 Si 0.959 3.041 8 H -0.267 1.267 9 H -0.291 1.291 10 H -0.295 1.295 11 C 0.180 3.820 12 C -0.139 4.139 13 C -0.047 4.047 14 C -0.046 4.046 15 C 0.219 3.781 16 N -0.295 5.295 17 N -0.056 5.056 18 N -0.199 5.199 19 H 0.495 0.505 20 N -0.292 5.292 21 C -0.053 4.053 22 C -0.161 4.161 23 C 0.117 3.883 24 F -0.140 7.140 25 H -0.001 1.001 26 H 0.021 0.979 27 H 0.034 0.966 28 H 0.245 0.755 29 H 0.059 0.941 30 H 0.080 0.920 31 H 0.142 0.858 32 H 0.163 0.837 33 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.492 -15.940 8.870 18.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.328 5.328 3 C -0.372 4.372 4 H 0.088 0.912 5 C -0.246 4.246 6 N -0.586 5.586 7 Si 0.788 3.212 8 H -0.191 1.191 9 H -0.217 1.217 10 H -0.222 1.222 11 C 0.054 3.946 12 C -0.143 4.143 13 C -0.068 4.068 14 C -0.049 4.049 15 C -0.061 4.061 16 N -0.167 5.167 17 N -0.051 5.051 18 N -0.050 5.050 19 H 0.354 0.646 20 N -0.144 5.144 21 C -0.074 4.074 22 C -0.180 4.180 23 C 0.097 3.903 24 F -0.119 7.119 25 H 0.018 0.982 26 H 0.039 0.961 27 H 0.052 0.948 28 H 0.055 0.945 29 H 0.077 0.923 30 H 0.098 0.902 31 H 0.160 0.840 32 H 0.180 0.820 33 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 2.925 -16.258 8.854 18.742 hybrid contribution 0.426 1.492 0.450 1.616 sum 3.351 -14.765 9.303 17.771 Atomic orbital electron populations 1.20567 0.82327 0.96292 0.97471 1.44313 1.02232 1.01230 1.85009 1.19489 0.97940 0.86019 1.33710 0.91221 1.25701 0.98390 1.01545 0.98934 1.70246 1.19250 1.27135 1.41997 0.85308 0.78254 0.80674 0.76957 1.19097 1.21740 1.22225 1.20037 0.96991 0.87855 0.89741 1.21095 0.95605 0.96158 1.01488 1.20902 0.97482 0.94646 0.93796 1.17282 0.98233 0.95208 0.94221 1.23553 0.96150 0.98624 0.87732 1.76101 1.11297 1.05131 1.24213 1.78835 1.17376 1.17448 0.91469 1.47759 1.20258 1.22433 1.14550 0.64584 1.74866 1.14822 1.05171 1.19589 1.21049 0.92646 0.93363 1.00326 1.21250 1.03584 0.99955 0.93219 1.18111 0.92313 0.86740 0.93172 1.91490 1.75763 1.58176 1.86427 0.98218 0.96056 0.94791 0.94527 0.92316 0.90151 0.84035 0.81963 0.82385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.92 9.01 127.77 1.15 10.08 16 2 N -0.61 -30.50 2.91 -731.29 -2.13 -32.62 16 3 C -0.24 -13.30 8.27 84.04 0.69 -12.61 16 4 H 0.07 3.82 7.66 -2.91 -0.02 3.80 16 5 C -0.05 -2.91 5.13 84.86 0.44 -2.47 16 6 N -0.94 -56.48 10.59 21.65 0.23 -56.25 16 7 Si 0.96 46.21 29.57 68.60 2.03 48.23 16 8 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 9 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 10 H -0.29 -14.30 7.11 99.48 0.71 -13.59 16 11 C 0.18 7.29 5.56 85.63 0.48 7.77 16 12 C -0.14 -5.31 5.46 -19.85 -0.11 -5.42 16 13 C -0.05 -1.58 9.32 22.47 0.21 -1.37 16 14 C -0.05 -1.38 5.88 -20.04 -0.12 -1.50 16 15 C 0.22 6.06 7.93 137.38 1.09 7.15 16 16 N -0.30 -8.47 12.23 -52.19 -0.64 -9.11 16 17 N -0.06 -1.28 13.47 37.02 0.50 -0.78 16 18 N -0.20 -3.19 7.90 37.02 0.29 -2.89 16 19 H 0.49 2.43 8.96 -347.53 -3.12 -0.68 16 20 N -0.29 -6.39 12.08 -52.14 -0.63 -7.02 16 21 C -0.05 -1.45 9.70 22.47 0.22 -1.23 16 22 C -0.16 -4.92 10.01 22.28 0.22 -4.70 16 23 C 0.12 4.51 7.21 22.42 0.16 4.67 16 24 F -0.14 -6.07 15.16 44.97 0.68 -5.39 16 25 H 0.00 -0.03 7.41 -2.39 -0.02 -0.05 16 26 H 0.02 1.14 7.20 -2.39 -0.02 1.12 16 27 H 0.03 1.43 7.84 -2.39 -0.02 1.41 16 28 H 0.25 14.40 8.31 -92.71 -0.77 13.63 16 29 H 0.06 2.35 7.97 -2.39 -0.02 2.33 16 30 H 0.08 2.80 7.67 -2.39 -0.02 2.79 16 31 H 0.14 4.49 7.82 -2.91 -0.02 4.47 16 32 H 0.16 3.39 7.88 -2.91 -0.02 3.37 16 33 H 0.16 3.95 8.06 -2.91 -0.02 3.93 16 Total: -1.00 -70.48 295.49 2.82 -67.66 By element: Atomic # 1 Polarization: -0.25 SS G_CDS: -1.95 Total: -2.19 kcal Atomic # 6 Polarization: -4.06 SS G_CDS: 4.43 Total: 0.37 kcal Atomic # 7 Polarization: -106.30 SS G_CDS: -2.37 Total: -108.68 kcal Atomic # 9 Polarization: -6.07 SS G_CDS: 0.68 Total: -5.39 kcal Atomic # 14 Polarization: 46.21 SS G_CDS: 2.03 Total: 48.23 kcal Total: -70.48 2.82 -67.66 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604708322.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 177.989 kcal (2) G-P(sol) polarization free energy of solvation -70.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.657 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds