Wall clock time and date at job start Mon Mar 30 2020 01:48:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46500 * 109.47376 * 2 1 4 4 C 1.37102 * 119.99570 * 264.74512 * 3 2 1 5 5 H 1.07999 * 119.99957 * 146.16425 * 4 3 2 6 6 C 1.38947 * 119.99906 * 326.16175 * 4 3 2 7 7 N 1.31409 * 120.00406 * 337.68711 * 6 4 3 8 8 Si 1.86801 * 119.99814 * 157.69811 * 6 4 3 9 9 H 1.48495 * 109.47592 * 59.99279 * 8 6 4 10 10 H 1.48498 * 109.47117 * 179.97438 * 8 6 4 11 11 H 1.48507 * 109.46676 * 299.99667 * 8 6 4 12 12 C 1.34778 * 120.00211 * 84.74290 * 3 2 1 13 13 O 1.21291 * 119.99783 * 180.02562 * 12 3 2 14 14 C 1.50698 * 120.00039 * 0.02562 * 12 3 2 15 15 C 1.50700 * 109.47079 * 180.02562 * 14 12 3 16 16 C 1.38374 * 119.84439 * 269.72205 * 15 14 12 17 17 C 1.37947 * 120.14706 * 179.71885 * 16 15 14 18 18 C 1.39633 * 119.84413 * 0.58168 * 17 16 15 19 19 C 1.47727 * 120.14489 * 179.68056 * 18 17 16 20 20 O 1.21477 * 119.99718 * 180.02562 * 19 18 17 21 21 O 1.34710 * 120.00093 * 0.02562 * 19 18 17 22 22 C 1.39621 * 119.70266 * 359.69366 * 18 17 16 23 23 C 1.37945 * 119.85064 * 0.02562 * 22 18 17 24 24 H 1.08999 * 109.47063 * 300.00838 * 1 2 3 25 25 H 1.09005 * 109.46899 * 60.00339 * 1 2 3 26 26 H 1.08993 * 109.47496 * 180.02562 * 1 2 3 27 27 H 1.08992 * 109.47405 * 239.99379 * 2 1 3 28 28 H 1.09005 * 109.46899 * 119.99661 * 2 1 3 29 29 H 0.96996 * 120.00671 * 180.02562 * 7 6 4 30 30 H 1.08998 * 109.47103 * 59.99731 * 14 12 3 31 31 H 1.08994 * 109.46870 * 299.99815 * 14 12 3 32 32 H 1.08002 * 119.92470 * 359.97438 * 16 15 14 33 33 H 1.07992 * 120.07670 * 180.27239 * 17 16 15 34 34 H 0.96704 * 116.99788 * 180.02562 * 21 19 18 35 35 H 1.08003 * 120.07740 * 179.97438 * 22 18 17 36 36 H 1.08003 * 119.92749 * 179.97438 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3494 1.9911 -1.1824 5 1 2.1816 3.0505 -1.3090 6 6 2.9008 1.2464 -2.2178 7 7 3.5052 0.1086 -1.9593 8 14 2.7831 1.8628 -3.9772 9 1 3.4565 3.1818 -4.0858 10 1 3.4449 0.8933 -4.8867 11 1 1.3546 2.0036 -4.3578 12 6 2.1422 2.0522 1.1623 13 8 2.5461 3.1959 1.1621 14 6 1.7788 1.3816 2.4620 15 6 2.0057 2.3401 3.6025 16 6 3.2346 2.3765 4.2373 17 6 3.4510 3.2556 5.2782 18 6 2.4225 4.1013 5.6987 19 6 2.6446 5.0402 6.8173 20 8 1.7479 5.7744 7.1811 21 8 3.8417 5.0823 7.4337 22 6 1.1831 4.0552 5.0573 23 6 0.9823 3.1754 4.0139 24 1 -0.3633 0.5140 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3634 -1.0276 0.0005 27 1 1.8933 -0.5139 -0.8898 28 1 1.8933 -0.5138 0.8901 29 1 3.8905 -0.4112 -2.6820 30 1 2.4008 0.4973 2.6008 31 1 0.7296 1.0876 2.4381 32 1 4.0276 1.7181 3.9145 33 1 4.4119 3.2861 5.7700 34 1 3.9392 5.7126 8.1606 35 1 0.3833 4.7063 5.3778 36 1 0.0240 3.1385 3.5172 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001605411523.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:32 Heat of formation + Delta-G solvation = -99.845118 kcal Electronic energy + Delta-G solvation = -20857.610726 eV Core-core repulsion = 17499.829681 eV Total energy + Delta-G solvation = -3357.781045 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.39693 -39.18748 -38.02114 -36.13848 -35.03573 -32.77093 -31.90748 -30.88298 -29.50060 -28.16404 -25.04613 -23.46622 -22.60720 -22.20516 -20.87024 -18.91268 -18.15522 -17.39754 -16.84326 -16.02235 -15.63785 -15.34007 -15.14500 -14.84517 -14.43995 -14.02039 -13.75553 -13.37533 -13.05245 -12.93974 -12.88549 -12.30178 -11.97576 -11.87213 -11.61424 -11.42964 -11.29400 -11.06904 -11.00619 -10.87451 -10.60873 -10.39416 -10.33752 -10.12271 -8.97393 -8.84350 -8.81933 -8.34116 -7.53237 -6.36920 -3.97641 0.79517 1.53882 2.58437 2.98603 3.17006 3.23535 3.27334 3.84750 3.88762 4.15229 4.79018 4.87238 5.00431 5.04288 5.06614 5.19063 5.49254 5.53956 5.70291 5.81353 5.82479 5.88177 6.07487 6.14996 6.19643 6.27595 6.32735 6.41447 6.45454 6.49389 6.77369 6.84512 6.99844 7.22695 7.56516 7.83500 8.20304 8.47206 9.15308 9.37765 9.97049 10.66755 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.031178 B = 0.003808 C = 0.003672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.846364 B = 7351.268881 C = 7623.152164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.094 3.906 3 N -0.439 5.439 4 C -0.308 4.308 5 H 0.092 0.908 6 C 0.036 3.964 7 N -0.870 5.870 8 Si 0.917 3.083 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.273 1.273 12 C 0.460 3.540 13 O -0.576 6.576 14 C -0.110 4.110 15 C 0.000 4.000 16 C -0.123 4.123 17 C -0.058 4.058 18 C -0.147 4.147 19 C 0.531 3.469 20 O -0.523 6.523 21 O -0.513 6.513 22 C -0.051 4.051 23 C -0.122 4.122 24 H 0.041 0.959 25 H 0.057 0.943 26 H 0.051 0.949 27 H 0.114 0.886 28 H 0.048 0.952 29 H 0.268 0.732 30 H 0.094 0.906 31 H 0.092 0.908 32 H 0.130 0.870 33 H 0.135 0.865 34 H 0.411 0.589 35 H 0.134 0.866 36 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.662 -0.506 12.528 12.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.031 4.031 3 N -0.158 5.158 4 C -0.435 4.435 5 H 0.110 0.890 6 C -0.168 4.168 7 N -0.508 5.508 8 Si 0.744 3.256 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.199 1.199 12 C 0.247 3.753 13 O -0.459 6.459 14 C -0.150 4.150 15 C -0.001 4.001 16 C -0.141 4.141 17 C -0.076 4.076 18 C -0.149 4.149 19 C 0.377 3.623 20 O -0.413 6.413 21 O -0.325 6.325 22 C -0.070 4.070 23 C -0.140 4.140 24 H 0.060 0.940 25 H 0.076 0.924 26 H 0.070 0.930 27 H 0.132 0.868 28 H 0.066 0.934 29 H 0.079 0.921 30 H 0.112 0.888 31 H 0.110 0.890 32 H 0.148 0.852 33 H 0.152 0.848 34 H 0.269 0.731 35 H 0.151 0.849 36 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -2.636 -0.182 12.164 12.448 hybrid contribution 0.065 0.512 -0.454 0.687 sum -2.571 0.330 11.710 11.994 Atomic orbital electron populations 1.22215 0.98208 1.00397 1.01499 1.21619 0.91736 0.85504 1.04209 1.43523 1.55676 1.11863 1.04784 1.19426 1.39873 0.95499 0.88743 0.89043 1.25313 0.94456 0.96489 1.00508 1.69902 1.32524 1.15295 1.33053 0.86140 0.78654 0.78792 0.82016 1.19738 1.20963 1.19898 1.20033 0.82933 0.88058 0.84254 1.90559 1.50120 1.18562 1.86647 1.20894 1.03521 0.98003 0.92618 1.19851 0.93173 0.94125 0.92916 1.21038 0.96964 0.99969 0.96088 1.21344 0.97985 0.92969 0.95311 1.18907 0.96680 1.00777 0.98489 1.21013 0.79190 0.80932 0.81173 1.90861 1.44080 1.41708 1.64639 1.84584 1.36166 1.62144 1.49563 1.21133 0.95408 0.96581 0.93839 1.20949 0.99819 0.96246 0.96988 0.93953 0.92403 0.93031 0.86827 0.93370 0.92147 0.88756 0.89003 0.85189 0.84763 0.73122 0.84856 0.85222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.80 10.15 37.16 0.38 -2.42 16 2 C 0.09 1.92 5.43 -4.04 -0.02 1.90 16 3 N -0.44 -10.70 2.56 -114.82 -0.29 -10.99 16 4 C -0.31 -8.34 8.98 -14.93 -0.13 -8.48 16 5 H 0.09 2.62 7.70 -52.49 -0.40 2.22 16 6 C 0.04 0.94 4.92 -17.47 -0.09 0.85 16 7 N -0.87 -22.75 11.33 55.50 0.63 -22.12 16 8 Si 0.92 20.23 29.61 -169.99 -5.03 15.19 16 9 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 10 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 11 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 12 C 0.46 10.73 7.59 -10.99 -0.08 10.65 16 13 O -0.58 -15.68 15.86 5.55 0.09 -15.59 16 14 C -0.11 -1.89 4.43 -29.04 -0.13 -2.02 16 15 C 0.00 0.00 4.38 -104.53 -0.46 -0.46 16 16 C -0.12 -1.88 9.68 -39.64 -0.38 -2.26 16 17 C -0.06 -0.81 9.62 -39.17 -0.38 -1.18 16 18 C -0.15 -2.14 5.87 -104.98 -0.62 -2.76 16 19 C 0.53 7.21 8.27 34.61 0.29 7.50 16 20 O -0.52 -8.26 17.13 -19.25 -0.33 -8.59 16 21 O -0.51 -5.19 12.68 -40.52 -0.51 -5.70 16 22 C -0.05 -0.75 9.60 -39.17 -0.38 -1.13 16 23 C -0.12 -1.86 9.68 -39.64 -0.38 -2.25 16 24 H 0.04 0.66 6.60 -51.93 -0.34 0.31 16 25 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 26 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.11 2.62 5.34 -51.93 -0.28 2.34 16 28 H 0.05 0.88 6.66 -51.93 -0.35 0.54 16 29 H 0.27 6.64 8.31 -40.82 -0.34 6.30 16 30 H 0.09 1.47 7.35 -51.93 -0.38 1.09 16 31 H 0.09 1.37 6.48 -51.93 -0.34 1.03 16 32 H 0.13 1.84 8.06 -52.49 -0.42 1.41 16 33 H 0.13 1.57 7.61 -52.49 -0.40 1.17 16 34 H 0.41 2.15 9.11 45.56 0.42 2.56 16 35 H 0.13 1.79 7.65 -52.48 -0.40 1.38 16 36 H 0.13 1.77 8.06 -52.48 -0.42 1.35 16 LS Contribution 314.29 15.07 4.74 4.74 Total: -1.00 -33.02 314.29 -6.40 -39.42 By element: Atomic # 1 Polarization: 9.01 SS G_CDS: -3.30 Total: 5.71 kcal Atomic # 6 Polarization: 0.32 SS G_CDS: -2.38 Total: -2.07 kcal Atomic # 7 Polarization: -33.45 SS G_CDS: 0.34 Total: -33.11 kcal Atomic # 8 Polarization: -29.13 SS G_CDS: -0.76 Total: -29.89 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.03 Total: 15.19 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -33.02 -6.40 -39.42 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605411523.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.421 kcal (2) G-P(sol) polarization free energy of solvation -33.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds