Wall clock time and date at job start Mon Mar 30 2020 01:48:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46500 * 109.47376 * 2 1 4 4 C 1.37102 * 119.99570 * 264.74512 * 3 2 1 5 5 H 1.07999 * 119.99957 * 146.16425 * 4 3 2 6 6 C 1.38947 * 119.99906 * 326.16175 * 4 3 2 7 7 N 1.31409 * 120.00406 * 337.68711 * 6 4 3 8 8 Si 1.86801 * 119.99814 * 157.69811 * 6 4 3 9 9 H 1.48495 * 109.47592 * 59.99279 * 8 6 4 10 10 H 1.48498 * 109.47117 * 179.97438 * 8 6 4 11 11 H 1.48507 * 109.46676 * 299.99667 * 8 6 4 12 12 C 1.34778 * 120.00211 * 84.74290 * 3 2 1 13 13 O 1.21291 * 119.99783 * 180.02562 * 12 3 2 14 14 C 1.50698 * 120.00039 * 0.02562 * 12 3 2 15 15 C 1.50700 * 109.47079 * 180.02562 * 14 12 3 16 16 C 1.38374 * 119.84439 * 269.72205 * 15 14 12 17 17 C 1.37947 * 120.14706 * 179.71885 * 16 15 14 18 18 C 1.39633 * 119.84413 * 0.58168 * 17 16 15 19 19 C 1.47727 * 120.14489 * 179.68056 * 18 17 16 20 20 O 1.21477 * 119.99718 * 180.02562 * 19 18 17 21 21 O 1.34710 * 120.00093 * 0.02562 * 19 18 17 22 22 C 1.39621 * 119.70266 * 359.69366 * 18 17 16 23 23 C 1.37945 * 119.85064 * 0.02562 * 22 18 17 24 24 H 1.08999 * 109.47063 * 300.00838 * 1 2 3 25 25 H 1.09005 * 109.46899 * 60.00339 * 1 2 3 26 26 H 1.08993 * 109.47496 * 180.02562 * 1 2 3 27 27 H 1.08992 * 109.47405 * 239.99379 * 2 1 3 28 28 H 1.09005 * 109.46899 * 119.99661 * 2 1 3 29 29 H 0.96996 * 120.00671 * 180.02562 * 7 6 4 30 30 H 1.08998 * 109.47103 * 59.99731 * 14 12 3 31 31 H 1.08994 * 109.46870 * 299.99815 * 14 12 3 32 32 H 1.08002 * 119.92470 * 359.97438 * 16 15 14 33 33 H 1.07992 * 120.07670 * 180.27239 * 17 16 15 34 34 H 0.96704 * 116.99788 * 180.02562 * 21 19 18 35 35 H 1.08003 * 120.07740 * 179.97438 * 22 18 17 36 36 H 1.08003 * 119.92749 * 179.97438 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3494 1.9911 -1.1824 5 1 2.1816 3.0505 -1.3090 6 6 2.9008 1.2464 -2.2178 7 7 3.5052 0.1086 -1.9593 8 14 2.7831 1.8628 -3.9772 9 1 3.4565 3.1818 -4.0858 10 1 3.4449 0.8933 -4.8867 11 1 1.3546 2.0036 -4.3578 12 6 2.1422 2.0522 1.1623 13 8 2.5461 3.1959 1.1621 14 6 1.7788 1.3816 2.4620 15 6 2.0057 2.3401 3.6025 16 6 3.2346 2.3765 4.2373 17 6 3.4510 3.2556 5.2782 18 6 2.4225 4.1013 5.6987 19 6 2.6446 5.0402 6.8173 20 8 1.7479 5.7744 7.1811 21 8 3.8417 5.0823 7.4337 22 6 1.1831 4.0552 5.0573 23 6 0.9823 3.1754 4.0139 24 1 -0.3633 0.5140 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3634 -1.0276 0.0005 27 1 1.8933 -0.5139 -0.8898 28 1 1.8933 -0.5138 0.8901 29 1 3.8905 -0.4112 -2.6820 30 1 2.4008 0.4973 2.6008 31 1 0.7296 1.0876 2.4381 32 1 4.0276 1.7181 3.9145 33 1 4.4119 3.2861 5.7700 34 1 3.9392 5.7126 8.1606 35 1 0.3833 4.7063 5.3778 36 1 0.0240 3.1385 3.5172 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001605411523.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:32 Heat of formation + Delta-G solvation = -120.758465 kcal Electronic energy + Delta-G solvation = -20858.517597 eV Core-core repulsion = 17499.829681 eV Total energy + Delta-G solvation = -3358.687916 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.47284 -40.66083 -39.41824 -37.11321 -36.86476 -34.28674 -33.58239 -32.00659 -31.13419 -29.52855 -26.81268 -24.73655 -23.89645 -23.60411 -22.03808 -20.58471 -19.15951 -18.70921 -18.45415 -17.76577 -16.90970 -16.65816 -16.48548 -16.35999 -15.73913 -15.55334 -15.23862 -14.56775 -14.51761 -14.40336 -14.09731 -13.70523 -13.55111 -13.40096 -12.90179 -12.83896 -12.67432 -12.60582 -12.54539 -12.19012 -12.10470 -12.00035 -11.74181 -11.70111 -10.85859 -10.42642 -9.96863 -9.80407 -9.43514 -8.32534 -6.01077 -0.34332 0.40917 1.39384 1.42494 1.48250 1.52798 2.05792 2.08343 2.31177 2.72375 3.03747 3.22815 3.71732 3.80113 3.99142 4.09786 4.18390 4.33564 4.38989 4.43169 4.61628 4.66179 4.70631 4.82372 4.94077 5.03967 5.09895 5.21767 5.33035 5.37092 5.48794 5.53435 5.59940 5.63113 5.85975 6.23126 6.56689 6.95749 7.21699 7.52304 8.11422 8.69025 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.031178 B = 0.003808 C = 0.003672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.846364 B = 7351.268881 C = 7623.152164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.091 3.909 3 N -0.453 5.453 4 C -0.342 4.342 5 H 0.061 0.939 6 C 0.006 3.994 7 N -0.885 5.885 8 Si 0.976 3.024 9 H -0.280 1.280 10 H -0.271 1.271 11 H -0.266 1.266 12 C 0.449 3.551 13 O -0.626 6.626 14 C -0.094 4.094 15 C -0.023 4.023 16 C -0.133 4.133 17 C -0.054 4.054 18 C -0.156 4.156 19 C 0.539 3.461 20 O -0.549 6.549 21 O -0.502 6.502 22 C -0.058 4.058 23 C -0.128 4.128 24 H 0.058 0.942 25 H 0.037 0.963 26 H 0.084 0.916 27 H 0.088 0.912 28 H 0.071 0.929 29 H 0.274 0.726 30 H 0.113 0.887 31 H 0.118 0.882 32 H 0.138 0.862 33 H 0.158 0.842 34 H 0.433 0.567 35 H 0.142 0.858 36 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.877 -1.383 13.414 13.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.032 4.032 3 N -0.172 5.172 4 C -0.470 4.470 5 H 0.079 0.921 6 C -0.196 4.196 7 N -0.523 5.523 8 Si 0.800 3.200 9 H -0.206 1.206 10 H -0.196 1.196 11 H -0.191 1.191 12 C 0.238 3.762 13 O -0.513 6.513 14 C -0.134 4.134 15 C -0.023 4.023 16 C -0.151 4.151 17 C -0.072 4.072 18 C -0.157 4.157 19 C 0.385 3.615 20 O -0.442 6.442 21 O -0.316 6.316 22 C -0.076 4.076 23 C -0.146 4.146 24 H 0.077 0.923 25 H 0.056 0.944 26 H 0.103 0.897 27 H 0.106 0.894 28 H 0.090 0.910 29 H 0.083 0.917 30 H 0.131 0.869 31 H 0.136 0.864 32 H 0.156 0.844 33 H 0.175 0.825 34 H 0.296 0.704 35 H 0.160 0.840 36 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -2.846 -1.095 13.073 13.424 hybrid contribution 0.212 0.809 -0.652 1.060 sum -2.633 -0.286 12.421 12.700 Atomic orbital electron populations 1.22116 0.95373 1.02505 1.01327 1.21738 0.94060 0.83397 1.04034 1.43802 1.55775 1.13148 1.04470 1.19327 1.41875 0.94765 0.91050 0.92109 1.25963 0.93604 0.96598 1.03464 1.69963 1.32338 1.15836 1.34179 0.85272 0.78928 0.78001 0.77827 1.20553 1.19581 1.19053 1.21004 0.81688 0.87555 0.85909 1.90514 1.52188 1.20870 1.87681 1.20774 1.05341 0.98081 0.89200 1.19931 0.94136 0.94956 0.93305 1.21248 0.96860 1.00531 0.96499 1.21563 0.98774 0.92079 0.94752 1.19156 0.96788 1.00972 0.98823 1.20806 0.79632 0.80185 0.80849 1.90855 1.45163 1.42720 1.65452 1.84524 1.34121 1.62738 1.50192 1.21297 0.96001 0.96574 0.93751 1.21129 1.00230 0.96085 0.97186 0.92315 0.94386 0.89708 0.89371 0.91041 0.91664 0.86920 0.86409 0.84442 0.82472 0.70436 0.84014 0.84121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.96 10.15 71.98 0.73 -4.23 16 2 C 0.09 3.65 5.43 86.38 0.47 4.12 16 3 N -0.45 -22.28 2.56 -635.55 -1.63 -23.91 16 4 C -0.34 -19.09 8.98 84.04 0.75 -18.34 16 5 H 0.06 3.68 7.70 -2.91 -0.02 3.66 16 6 C 0.01 0.33 4.92 84.93 0.42 0.75 16 7 N -0.89 -46.36 11.33 21.66 0.25 -46.12 16 8 Si 0.98 41.74 29.61 68.60 2.03 43.77 16 9 H -0.28 -12.25 7.11 99.48 0.71 -11.55 16 10 H -0.27 -10.94 7.11 99.48 0.71 -10.24 16 11 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 12 C 0.45 21.09 7.59 87.66 0.66 21.75 16 13 O -0.63 -35.08 15.86 -3.06 -0.05 -35.13 16 14 C -0.09 -3.11 4.43 29.10 0.13 -2.98 16 15 C -0.02 -0.72 4.38 -19.80 -0.09 -0.81 16 16 C -0.13 -3.93 9.68 22.23 0.22 -3.71 16 17 C -0.05 -1.41 9.62 22.54 0.22 -1.19 16 18 C -0.16 -4.32 5.87 -20.10 -0.12 -4.44 16 19 C 0.54 13.71 8.27 70.33 0.58 14.29 16 20 O -0.55 -16.69 17.13 19.91 0.34 -16.35 16 21 O -0.50 -8.85 12.68 -56.20 -0.71 -9.56 16 22 C -0.06 -1.65 9.60 22.53 0.22 -1.43 16 23 C -0.13 -3.81 9.68 22.23 0.22 -3.60 16 24 H 0.06 1.67 6.60 -2.39 -0.02 1.65 16 25 H 0.04 1.35 8.14 -2.38 -0.02 1.33 16 26 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 27 H 0.09 4.03 5.34 -2.39 -0.01 4.02 16 28 H 0.07 2.48 6.66 -2.38 -0.02 2.46 16 29 H 0.27 13.41 8.31 -92.71 -0.77 12.64 16 30 H 0.11 3.26 7.35 -2.39 -0.02 3.25 16 31 H 0.12 3.21 6.48 -2.39 -0.02 3.19 16 32 H 0.14 3.72 8.06 -2.91 -0.02 3.70 16 33 H 0.16 3.29 7.61 -2.91 -0.02 3.27 16 34 H 0.43 3.30 9.11 -74.05 -0.67 2.63 16 35 H 0.14 3.70 7.65 -2.91 -0.02 3.67 16 36 H 0.14 3.71 8.06 -2.91 -0.02 3.69 16 Total: -1.00 -72.96 314.29 5.08 -67.87 By element: Atomic # 1 Polarization: 18.80 SS G_CDS: 0.45 Total: 19.25 kcal Atomic # 6 Polarization: -4.23 SS G_CDS: 4.41 Total: 0.17 kcal Atomic # 7 Polarization: -68.64 SS G_CDS: -1.38 Total: -70.02 kcal Atomic # 8 Polarization: -60.62 SS G_CDS: -0.42 Total: -61.04 kcal Atomic # 14 Polarization: 41.74 SS G_CDS: 2.03 Total: 43.77 kcal Total: -72.96 5.08 -67.87 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605411523.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.886 kcal (2) G-P(sol) polarization free energy of solvation -72.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds