Wall clock time and date at job start Mon Mar 30 2020 02:01:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46505 * 120.00127 * 2 1 4 4 C 1.50700 * 109.46867 * 269.99804 * 3 2 1 5 5 H 1.08001 * 119.99905 * 359.97438 * 4 3 2 6 6 C 1.37878 * 120.00143 * 180.02562 * 4 3 2 7 7 N 1.31511 * 120.00346 * 179.97438 * 6 4 3 8 8 Si 1.86804 * 119.99744 * 359.97438 * 6 4 3 9 9 H 1.48496 * 109.47288 * 90.00069 * 8 6 4 10 10 H 1.48508 * 109.46915 * 210.00269 * 8 6 4 11 11 H 1.48504 * 109.46985 * 329.99612 * 8 6 4 12 12 C 1.34777 * 120.00277 * 179.97438 * 2 1 3 13 13 O 1.21548 * 120.00463 * 184.85214 * 12 2 1 14 14 C 1.47846 * 119.99395 * 4.84913 * 12 2 1 15 15 C 1.39597 * 120.14829 * 320.80048 * 14 12 2 16 16 C 1.37931 * 119.85458 * 180.02562 * 15 14 12 17 17 C 1.38386 * 120.14641 * 359.72449 * 16 15 14 18 18 C 1.38335 * 120.28808 * 0.55582 * 17 16 15 19 19 C 1.50707 * 119.92639 * 179.72173 * 18 17 16 20 20 C 1.50698 * 109.46764 * 269.72302 * 19 18 17 21 21 O 1.20828 * 120.00748 * 0.02562 * 20 19 18 22 22 O 1.34235 * 119.99990 * 179.97438 * 20 19 18 23 23 C 1.37978 * 120.14738 * 359.44549 * 18 17 16 24 24 H 1.09001 * 109.47718 * 265.62826 * 1 2 3 25 25 H 1.09000 * 109.46932 * 25.62775 * 1 2 3 26 26 H 1.08997 * 109.46947 * 145.62163 * 1 2 3 27 27 H 1.08996 * 109.46895 * 29.99402 * 3 2 1 28 28 H 1.08996 * 109.47162 * 149.99466 * 3 2 1 29 29 H 0.96996 * 119.99832 * 179.97438 * 7 6 4 30 30 H 1.07996 * 120.06940 * 0.02562 * 15 14 12 31 31 H 1.08003 * 119.93246 * 180.02562 * 16 15 14 32 32 H 1.07995 * 119.85578 * 180.29459 * 17 16 15 33 33 H 1.08999 * 109.47182 * 149.72620 * 19 18 17 34 34 H 1.08991 * 109.46871 * 29.72329 * 19 18 17 35 35 H 0.96696 * 116.99896 * 180.02562 * 22 20 19 36 36 H 1.08000 * 120.07513 * 180.25470 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4487 1.7037 -1.4208 5 1 2.0981 1.0956 -2.2417 6 6 3.1270 2.8774 -1.6729 7 7 3.3466 3.2567 -2.9128 8 14 3.7339 3.9287 -0.2530 9 1 5.1070 3.5068 0.1237 10 1 3.7498 5.3554 -0.6650 11 1 2.8272 3.7597 0.9109 12 6 2.1389 -1.1672 0.0005 13 8 3.3511 -1.1691 0.0896 14 6 1.4036 -2.4453 -0.1071 15 6 0.1903 -2.6147 0.5623 16 6 -0.4903 -3.8098 0.4580 17 6 0.0241 -4.8377 -0.3127 18 6 1.2286 -4.6783 -0.9739 19 6 1.7844 -5.8053 -1.8060 20 6 2.6653 -6.6762 -0.9477 21 8 2.8251 -6.4095 0.2199 22 8 3.2717 -7.7489 -1.4801 23 6 1.9196 -3.4879 -0.8780 24 1 -0.3634 -0.0783 1.0246 25 1 -0.3633 0.9266 -0.4445 26 1 -0.3633 -0.8481 -0.5803 27 1 1.6084 2.0284 0.5137 28 1 3.1498 1.1384 0.5139 29 1 3.8235 4.0826 -3.0900 30 1 -0.2143 -1.8117 1.1604 31 1 -1.4293 -3.9421 0.9751 32 1 -0.5152 -5.7697 -0.3948 33 1 2.3700 -5.3951 -2.6287 34 1 0.9636 -6.4007 -2.2057 35 1 3.8265 -8.2773 -0.8902 36 1 2.8580 -3.3634 -1.3981 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001606105777.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:02 Heat of formation + Delta-G solvation = -89.967031 kcal Electronic energy + Delta-G solvation = -20850.473846 eV Core-core repulsion = 17493.121146 eV Total energy + Delta-G solvation = -3357.352699 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.61548 -39.78907 -38.06953 -36.27097 -35.05572 -33.31076 -32.43762 -31.06608 -28.89580 -27.80242 -26.18300 -23.87146 -22.89990 -21.86111 -21.02426 -18.83202 -18.27898 -16.95933 -16.83641 -16.44688 -16.34628 -16.25005 -15.55840 -15.01557 -14.37729 -14.30816 -13.89571 -13.47999 -13.29223 -13.03470 -12.61446 -12.47603 -12.42372 -12.20351 -12.06401 -11.69495 -11.57023 -11.37071 -11.04033 -10.89775 -10.76802 -10.52517 -10.17001 -9.57172 -9.17733 -8.87035 -8.73799 -8.59757 -7.73801 -6.09907 -4.09154 1.06027 1.31683 2.04071 2.82951 3.29270 3.34029 3.35443 3.37471 3.70909 4.04252 4.37472 4.39059 4.67731 4.86141 4.99943 5.06068 5.15280 5.22636 5.25446 5.32289 5.54049 5.62720 5.75799 5.86227 5.98353 6.15491 6.29291 6.32882 6.40184 6.44665 6.69006 6.87922 6.95011 7.29902 7.58901 7.70523 8.18196 8.45040 8.87601 8.94647 9.50086 11.03365 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.025381 B = 0.004116 C = 0.003818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.944171 B = 6801.216241 C = 7331.300672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.590 5.590 3 C 0.214 3.786 4 C -0.531 4.531 5 H 0.075 0.925 6 C 0.073 3.927 7 N -0.897 5.897 8 Si 0.876 3.124 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.265 1.265 12 C 0.549 3.451 13 O -0.535 6.535 14 C -0.112 4.112 15 C -0.091 4.091 16 C -0.128 4.128 17 C -0.090 4.090 18 C -0.093 4.093 19 C -0.069 4.069 20 C 0.476 3.524 21 O -0.502 6.502 22 O -0.520 6.520 23 C -0.049 4.049 24 H 0.048 0.952 25 H 0.077 0.923 26 H 0.067 0.933 27 H 0.032 0.968 28 H 0.039 0.961 29 H 0.265 0.735 30 H 0.137 0.863 31 H 0.127 0.873 32 H 0.122 0.878 33 H 0.118 0.882 34 H 0.116 0.884 35 H 0.410 0.590 36 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.167 -18.836 4.094 21.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.321 5.321 3 C 0.094 3.906 4 C -0.570 4.570 5 H 0.093 0.907 6 C -0.129 4.129 7 N -0.535 5.535 8 Si 0.703 3.297 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.190 1.190 12 C 0.336 3.664 13 O -0.413 6.413 14 C -0.115 4.115 15 C -0.110 4.110 16 C -0.146 4.146 17 C -0.108 4.108 18 C -0.093 4.093 19 C -0.107 4.107 20 C 0.318 3.682 21 O -0.388 6.388 22 O -0.333 6.333 23 C -0.068 4.068 24 H 0.066 0.934 25 H 0.096 0.904 26 H 0.085 0.915 27 H 0.050 0.950 28 H 0.057 0.943 29 H 0.075 0.925 30 H 0.154 0.846 31 H 0.145 0.855 32 H 0.140 0.860 33 H 0.136 0.864 34 H 0.134 0.866 35 H 0.269 0.731 36 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -8.642 -18.321 4.100 20.668 hybrid contribution 0.684 0.318 0.935 1.202 sum -7.959 -18.002 5.035 20.317 Atomic orbital electron populations 1.21997 0.81012 1.03575 1.00018 1.47742 1.06349 1.06890 1.71096 1.19726 0.92637 0.79736 0.98509 1.21331 1.37157 1.07304 0.91196 0.90699 1.24849 0.95154 0.97310 0.95616 1.69893 1.41381 1.23574 1.18667 0.86846 0.80202 0.79730 0.82903 1.19841 1.21018 1.19023 1.18193 0.87134 0.83372 0.77716 1.90753 1.13569 1.87058 1.49876 1.20116 0.95897 0.95325 1.00169 1.21721 0.93359 0.97929 0.97954 1.21011 1.00469 0.93221 0.99858 1.21052 0.95068 0.98723 0.95944 1.19103 0.95910 0.94021 1.00281 1.20237 0.99066 0.93971 0.97404 1.23441 0.78360 0.79141 0.87301 1.90783 1.59658 1.70129 1.18280 1.84523 1.61062 1.39515 1.48184 1.21040 0.98503 0.91123 0.96166 0.93395 0.90432 0.91454 0.94986 0.94290 0.92518 0.84553 0.85462 0.86004 0.86373 0.86589 0.73141 0.85130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.22 8.88 59.84 0.53 1.75 16 2 N -0.59 -12.56 2.86 -184.08 -0.53 -13.09 16 3 C 0.21 5.33 4.25 -5.19 -0.02 5.31 16 4 C -0.53 -15.39 9.94 -34.44 -0.34 -15.74 16 5 H 0.07 2.37 8.06 -52.49 -0.42 1.95 16 6 C 0.07 2.14 5.47 -17.82 -0.10 2.05 16 7 N -0.90 -27.69 13.96 55.43 0.77 -26.92 16 8 Si 0.88 21.66 27.47 -169.99 -4.67 16.99 16 9 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 10 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 11 H -0.27 -6.17 6.54 56.52 0.37 -5.80 16 12 C 0.55 11.99 7.35 -12.33 -0.09 11.90 16 13 O -0.53 -13.92 16.47 5.32 0.09 -13.83 16 14 C -0.11 -1.93 5.24 -104.97 -0.55 -2.47 16 15 C -0.09 -1.23 7.57 -39.19 -0.30 -1.53 16 16 C -0.13 -1.41 10.03 -39.64 -0.40 -1.80 16 17 C -0.09 -0.97 9.69 -39.49 -0.38 -1.35 16 18 C -0.09 -1.14 4.37 -104.68 -0.46 -1.60 16 19 C -0.07 -0.63 5.94 -29.03 -0.17 -0.80 16 20 C 0.48 5.10 8.32 36.00 0.30 5.40 16 21 O -0.50 -7.45 16.79 -18.75 -0.31 -7.77 16 22 O -0.52 -4.12 13.42 -39.27 -0.53 -4.64 16 23 C -0.05 -0.78 9.28 -39.18 -0.36 -1.15 16 24 H 0.05 0.60 6.90 -51.93 -0.36 0.25 16 25 H 0.08 1.24 8.04 -51.93 -0.42 0.82 16 26 H 0.07 0.94 5.81 -51.93 -0.30 0.64 16 27 H 0.03 0.75 7.13 -51.93 -0.37 0.38 16 28 H 0.04 1.04 6.79 -51.93 -0.35 0.68 16 29 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 30 H 0.14 1.62 5.30 -52.49 -0.28 1.34 16 31 H 0.13 1.02 8.06 -52.48 -0.42 0.59 16 32 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 33 H 0.12 0.92 8.08 -51.93 -0.42 0.50 16 34 H 0.12 0.69 8.08 -51.93 -0.42 0.27 16 35 H 0.41 1.68 9.10 45.56 0.41 2.09 16 36 H 0.13 2.14 8.05 -52.49 -0.42 1.72 16 LS Contribution 313.81 15.07 4.73 4.73 Total: -1.00 -38.03 313.81 -6.15 -44.17 By element: Atomic # 1 Polarization: 3.75 SS G_CDS: -3.36 Total: 0.39 kcal Atomic # 6 Polarization: 2.30 SS G_CDS: -2.34 Total: -0.04 kcal Atomic # 7 Polarization: -40.25 SS G_CDS: 0.25 Total: -40.00 kcal Atomic # 8 Polarization: -25.49 SS G_CDS: -0.75 Total: -26.24 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.67 Total: 16.99 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -38.03 -6.15 -44.17 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001606105777.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.793 kcal (2) G-P(sol) polarization free energy of solvation -38.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds