Wall clock time and date at job start Mon Mar 30 2020 02:01:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46505 * 120.00127 * 2 1 4 4 C 1.50700 * 109.46867 * 269.99804 * 3 2 1 5 5 H 1.08001 * 119.99905 * 359.97438 * 4 3 2 6 6 C 1.37878 * 120.00143 * 180.02562 * 4 3 2 7 7 N 1.31511 * 120.00346 * 179.97438 * 6 4 3 8 8 Si 1.86804 * 119.99744 * 359.97438 * 6 4 3 9 9 H 1.48496 * 109.47288 * 90.00069 * 8 6 4 10 10 H 1.48508 * 109.46915 * 210.00269 * 8 6 4 11 11 H 1.48504 * 109.46985 * 329.99612 * 8 6 4 12 12 C 1.34777 * 120.00277 * 179.97438 * 2 1 3 13 13 O 1.21548 * 120.00463 * 184.85214 * 12 2 1 14 14 C 1.47846 * 119.99395 * 4.84913 * 12 2 1 15 15 C 1.39597 * 120.14829 * 320.80048 * 14 12 2 16 16 C 1.37931 * 119.85458 * 180.02562 * 15 14 12 17 17 C 1.38386 * 120.14641 * 359.72449 * 16 15 14 18 18 C 1.38335 * 120.28808 * 0.55582 * 17 16 15 19 19 C 1.50707 * 119.92639 * 179.72173 * 18 17 16 20 20 C 1.50698 * 109.46764 * 269.72302 * 19 18 17 21 21 O 1.20828 * 120.00748 * 0.02562 * 20 19 18 22 22 O 1.34235 * 119.99990 * 179.97438 * 20 19 18 23 23 C 1.37978 * 120.14738 * 359.44549 * 18 17 16 24 24 H 1.09001 * 109.47718 * 265.62826 * 1 2 3 25 25 H 1.09000 * 109.46932 * 25.62775 * 1 2 3 26 26 H 1.08997 * 109.46947 * 145.62163 * 1 2 3 27 27 H 1.08996 * 109.46895 * 29.99402 * 3 2 1 28 28 H 1.08996 * 109.47162 * 149.99466 * 3 2 1 29 29 H 0.96996 * 119.99832 * 179.97438 * 7 6 4 30 30 H 1.07996 * 120.06940 * 0.02562 * 15 14 12 31 31 H 1.08003 * 119.93246 * 180.02562 * 16 15 14 32 32 H 1.07995 * 119.85578 * 180.29459 * 17 16 15 33 33 H 1.08999 * 109.47182 * 149.72620 * 19 18 17 34 34 H 1.08991 * 109.46871 * 29.72329 * 19 18 17 35 35 H 0.96696 * 116.99896 * 180.02562 * 22 20 19 36 36 H 1.08000 * 120.07513 * 180.25470 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4487 1.7037 -1.4208 5 1 2.0981 1.0956 -2.2417 6 6 3.1270 2.8774 -1.6729 7 7 3.3466 3.2567 -2.9128 8 14 3.7339 3.9287 -0.2530 9 1 5.1070 3.5068 0.1237 10 1 3.7498 5.3554 -0.6650 11 1 2.8272 3.7597 0.9109 12 6 2.1389 -1.1672 0.0005 13 8 3.3511 -1.1691 0.0896 14 6 1.4036 -2.4453 -0.1071 15 6 0.1903 -2.6147 0.5623 16 6 -0.4903 -3.8098 0.4580 17 6 0.0241 -4.8377 -0.3127 18 6 1.2286 -4.6783 -0.9739 19 6 1.7844 -5.8053 -1.8060 20 6 2.6653 -6.6762 -0.9477 21 8 2.8251 -6.4095 0.2199 22 8 3.2717 -7.7489 -1.4801 23 6 1.9196 -3.4879 -0.8780 24 1 -0.3634 -0.0783 1.0246 25 1 -0.3633 0.9266 -0.4445 26 1 -0.3633 -0.8481 -0.5803 27 1 1.6084 2.0284 0.5137 28 1 3.1498 1.1384 0.5139 29 1 3.8235 4.0826 -3.0900 30 1 -0.2143 -1.8117 1.1604 31 1 -1.4293 -3.9421 0.9751 32 1 -0.5152 -5.7697 -0.3948 33 1 2.3700 -5.3951 -2.6287 34 1 0.9636 -6.4007 -2.2057 35 1 3.8265 -8.2773 -0.8902 36 1 2.8580 -3.3634 -1.3981 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001606105777.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:01 Heat of formation + Delta-G solvation = -118.361663 kcal Electronic energy + Delta-G solvation = -20851.705129 eV Core-core repulsion = 17493.121146 eV Total energy + Delta-G solvation = -3358.583983 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.59109 -41.02650 -39.33634 -37.07655 -36.79952 -34.89010 -34.00165 -32.21986 -30.53375 -28.96967 -27.64266 -25.48848 -23.80713 -23.40346 -22.00586 -20.30369 -19.17460 -19.08045 -18.01712 -17.62902 -17.37373 -17.22414 -16.98623 -16.46266 -15.98583 -15.62869 -15.26408 -14.72442 -14.41389 -14.35126 -14.20188 -13.85891 -13.70054 -13.38143 -13.25279 -13.11404 -12.88587 -12.55085 -12.47922 -12.42426 -12.09559 -11.97810 -11.77714 -11.66478 -10.87066 -10.83693 -9.93314 -9.76281 -9.46951 -8.37091 -6.43158 -0.00714 0.31510 1.23499 1.31187 1.35901 1.44225 1.73389 2.17518 2.28644 2.30027 2.90094 2.97049 3.53034 3.56011 3.91695 4.06558 4.21498 4.30560 4.39684 4.47722 4.55579 4.58835 4.62261 4.74071 4.86075 4.90178 4.93986 5.03875 5.37606 5.39783 5.41471 5.46631 5.54794 5.64048 5.95158 6.19615 6.56021 6.57945 7.01122 7.14550 7.28549 8.79866 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.025381 B = 0.004116 C = 0.003818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.944171 B = 6801.216241 C = 7331.300672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.597 5.597 3 C 0.222 3.778 4 C -0.542 4.542 5 H 0.028 0.972 6 C 0.013 3.987 7 N -0.943 5.943 8 Si 0.949 3.051 9 H -0.278 1.278 10 H -0.271 1.271 11 H -0.236 1.236 12 C 0.539 3.461 13 O -0.597 6.597 14 C -0.144 4.144 15 C -0.091 4.091 16 C -0.117 4.117 17 C -0.080 4.080 18 C -0.093 4.093 19 C -0.070 4.070 20 C 0.483 3.517 21 O -0.551 6.551 22 O -0.511 6.511 23 C -0.077 4.077 24 H 0.090 0.910 25 H 0.072 0.928 26 H 0.085 0.915 27 H 0.058 0.942 28 H 0.018 0.982 29 H 0.270 0.730 30 H 0.153 0.847 31 H 0.171 0.829 32 H 0.164 0.836 33 H 0.126 0.874 34 H 0.159 0.841 35 H 0.427 0.573 36 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.965 -20.486 5.660 24.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.327 5.327 3 C 0.100 3.900 4 C -0.580 4.580 5 H 0.046 0.954 6 C -0.185 4.185 7 N -0.583 5.583 8 Si 0.771 3.229 9 H -0.204 1.204 10 H -0.196 1.196 11 H -0.159 1.159 12 C 0.329 3.671 13 O -0.480 6.480 14 C -0.147 4.147 15 C -0.109 4.109 16 C -0.134 4.134 17 C -0.097 4.097 18 C -0.093 4.093 19 C -0.107 4.107 20 C 0.327 3.673 21 O -0.442 6.442 22 O -0.325 6.325 23 C -0.097 4.097 24 H 0.108 0.892 25 H 0.091 0.909 26 H 0.103 0.897 27 H 0.076 0.924 28 H 0.036 0.964 29 H 0.079 0.921 30 H 0.171 0.829 31 H 0.188 0.812 32 H 0.182 0.818 33 H 0.144 0.856 34 H 0.176 0.824 35 H 0.288 0.712 36 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -11.498 -20.006 5.652 23.757 hybrid contribution 1.517 0.654 0.331 1.685 sum -9.981 -19.351 5.982 22.580 Atomic orbital electron populations 1.22335 0.77516 1.04175 1.02953 1.47849 1.08620 1.05623 1.70604 1.19424 0.92877 0.82108 0.95625 1.21537 1.37266 1.06995 0.92204 0.95390 1.25848 0.95069 0.98837 0.98744 1.70041 1.42475 1.24512 1.21281 0.85706 0.79539 0.77831 0.79826 1.20355 1.19615 1.15949 1.19069 0.86817 0.85084 0.76176 1.90688 1.16380 1.88160 1.52744 1.19861 0.97936 0.93362 1.03574 1.21903 0.91848 0.99791 0.97372 1.21516 1.01311 0.91693 0.98891 1.21627 0.94053 1.00189 0.93868 1.19400 0.96243 0.93288 1.00341 1.20383 1.00336 0.93278 0.96688 1.23692 0.77821 0.79228 0.86607 1.90774 1.61541 1.71443 1.20402 1.84486 1.60880 1.38813 1.48335 1.21036 0.98438 0.92901 0.97280 0.89234 0.90908 0.89694 0.92446 0.96356 0.92117 0.82930 0.81167 0.81811 0.85635 0.82353 0.71169 0.87910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.15 8.88 127.77 1.13 3.28 16 2 N -0.60 -25.98 2.86 -854.59 -2.44 -28.42 16 3 C 0.22 11.25 4.25 85.63 0.36 11.61 16 4 C -0.54 -32.80 9.94 25.60 0.25 -32.55 16 5 H 0.03 1.89 8.06 -2.91 -0.02 1.87 16 6 C 0.01 0.80 5.47 84.66 0.46 1.27 16 7 N -0.94 -60.35 13.96 21.45 0.30 -60.05 16 8 Si 0.95 45.14 27.47 68.60 1.88 47.03 16 9 H -0.28 -13.39 7.11 99.48 0.71 -12.69 16 10 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 11 H -0.24 -10.06 6.54 99.48 0.65 -9.41 16 12 C 0.54 24.76 7.35 86.79 0.64 25.40 16 13 O -0.60 -33.52 16.47 -3.87 -0.06 -33.58 16 14 C -0.14 -5.06 5.24 -20.09 -0.11 -5.17 16 15 C -0.09 -2.24 7.57 22.53 0.17 -2.07 16 16 C -0.12 -2.05 10.03 22.23 0.22 -1.83 16 17 C -0.08 -1.39 9.69 22.33 0.22 -1.17 16 18 C -0.09 -2.12 4.37 -19.90 -0.09 -2.21 16 19 C -0.07 -1.10 5.94 29.10 0.17 -0.93 16 20 C 0.48 9.58 8.32 71.24 0.59 10.17 16 21 O -0.55 -16.06 16.79 21.96 0.37 -15.69 16 22 O -0.51 -7.02 13.42 -51.47 -0.69 -7.71 16 23 C -0.08 -2.54 9.28 22.53 0.21 -2.33 16 24 H 0.09 1.96 6.90 -2.39 -0.02 1.94 16 25 H 0.07 2.24 8.04 -2.39 -0.02 2.23 16 26 H 0.08 2.25 5.81 -2.39 -0.01 2.23 16 27 H 0.06 2.61 7.13 -2.39 -0.02 2.59 16 28 H 0.02 1.01 6.79 -2.39 -0.02 0.99 16 29 H 0.27 15.97 8.31 -92.71 -0.77 15.20 16 30 H 0.15 3.12 5.30 -2.91 -0.02 3.11 16 31 H 0.17 1.59 8.06 -2.91 -0.02 1.57 16 32 H 0.16 1.53 8.06 -2.91 -0.02 1.51 16 33 H 0.13 1.82 8.08 -2.39 -0.02 1.80 16 34 H 0.16 1.14 8.08 -2.39 -0.02 1.12 16 35 H 0.43 2.72 9.10 -74.06 -0.67 2.04 16 36 H 0.10 3.77 8.05 -2.91 -0.02 3.75 16 Total: -1.00 -90.63 313.81 3.99 -86.64 By element: Atomic # 1 Polarization: 7.92 SS G_CDS: 0.39 Total: 8.31 kcal Atomic # 6 Polarization: -0.76 SS G_CDS: 4.25 Total: 3.48 kcal Atomic # 7 Polarization: -86.33 SS G_CDS: -2.14 Total: -88.48 kcal Atomic # 8 Polarization: -56.59 SS G_CDS: -0.39 Total: -56.98 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 1.88 Total: 47.03 kcal Total: -90.63 3.99 -86.64 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001606105777.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.723 kcal (2) G-P(sol) polarization free energy of solvation -90.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds