Wall clock time and date at job start Mon Mar 30 2020 01:35:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.47141 * 2 1 4 4 C 1.50691 * 109.47627 * 239.99326 * 2 1 3 5 5 O 1.20835 * 119.99938 * 0.02562 * 4 2 1 6 6 O 1.34231 * 120.00289 * 179.97438 * 4 2 1 7 7 C 1.52998 * 109.46868 * 119.99102 * 2 1 3 8 8 H 1.08998 * 109.47145 * 60.00297 * 7 2 1 9 9 N 1.46498 * 109.47465 * 300.00442 * 7 2 1 10 10 C 1.34773 * 120.00156 * 85.00158 * 9 7 2 11 11 O 1.21688 * 120.00040 * 359.97438 * 10 9 7 12 12 C 1.46376 * 120.00372 * 180.02562 * 10 9 7 13 13 H 1.08002 * 119.99738 * 353.94656 * 12 10 9 14 14 C 1.40047 * 120.00302 * 173.94956 * 12 10 9 15 15 N 1.30672 * 120.00141 * 6.15024 * 14 12 10 16 16 Si 1.86803 * 119.99963 * 186.15553 * 14 12 10 17 17 H 1.48501 * 109.46900 * 94.98209 * 16 14 12 18 18 H 1.48496 * 109.47031 * 214.97921 * 16 14 12 19 19 H 1.48502 * 109.47115 * 334.98122 * 16 14 12 20 20 C 1.50703 * 109.47385 * 180.02562 * 7 2 1 21 21 C 1.38232 * 120.00398 * 260.00777 * 20 7 2 22 22 C 1.38231 * 120.00241 * 179.97438 * 21 20 7 23 23 C 1.38236 * 119.99914 * 359.97130 * 22 21 20 24 24 C 1.38235 * 120.00240 * 0.02562 * 23 22 21 25 25 C 1.38236 * 119.99650 * 79.97722 * 20 7 2 26 26 H 1.08997 * 109.47467 * 300.00491 * 1 2 3 27 27 H 1.09003 * 109.47072 * 60.00886 * 1 2 3 28 28 H 1.09007 * 109.47095 * 180.02562 * 1 2 3 29 29 H 0.96700 * 116.99696 * 179.97438 * 6 4 2 30 30 H 0.96999 * 120.00192 * 265.00050 * 9 7 2 31 31 H 0.96993 * 119.99955 * 180.02562 * 15 14 12 32 32 H 1.08005 * 119.99728 * 359.97183 * 21 20 7 33 33 H 1.07999 * 120.00100 * 179.97438 * 22 21 20 34 34 H 1.08003 * 120.00211 * 179.72834 * 23 22 21 35 35 H 1.07995 * 120.00588 * 179.97438 * 24 23 22 36 36 H 1.07998 * 120.00122 * 0.02562 * 25 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2303 5 8 1.2473 -1.1694 -2.0259 6 8 3.3522 -0.8327 -1.4429 7 6 2.0399 -0.7211 1.2494 8 1 1.6766 -1.7487 1.2495 9 7 1.5515 -0.0304 2.4454 10 6 0.3296 -0.3162 2.9369 11 8 -0.3682 -1.1477 2.3869 12 6 -0.1587 0.3743 4.1317 13 1 0.4952 1.0397 4.6759 14 6 -1.4736 0.1720 4.5692 15 7 -2.2265 -0.7217 3.9845 16 14 -2.1512 1.1800 5.9884 17 1 -2.8853 2.3554 5.4546 18 1 -3.0763 0.3423 6.7932 19 1 -1.0307 1.6437 6.8456 20 6 3.5470 -0.7206 1.2498 21 6 4.2387 -1.8452 0.8404 22 6 5.6210 -1.8445 0.8403 23 6 6.3116 -0.7190 1.2491 24 6 5.6200 0.4057 1.6584 25 6 4.2376 0.4048 1.6590 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3634 -1.0277 0.0005 29 1 3.6263 -1.2968 -2.2457 30 1 2.1076 0.6327 2.8837 31 1 -3.1373 -0.8615 4.2873 32 1 3.6991 -2.7244 0.5207 33 1 6.1614 -2.7233 0.5209 34 1 7.3917 -0.7199 1.2532 35 1 6.1595 1.2849 1.9781 36 1 3.6972 1.2835 1.9788 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001609638595.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:52 Heat of formation + Delta-G solvation = -105.891011 kcal Electronic energy + Delta-G solvation = -21884.833045 eV Core-core repulsion = 18526.789830 eV Total energy + Delta-G solvation = -3358.043215 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.40584 -39.03030 -37.53517 -35.87337 -34.70890 -32.47882 -31.48721 -30.75935 -30.38490 -26.65117 -25.49811 -23.78383 -22.49873 -21.27860 -20.14681 -19.27276 -17.85871 -17.62288 -16.57228 -16.27722 -15.71366 -15.32688 -14.96175 -14.69779 -14.06909 -13.89816 -13.56844 -13.19172 -13.14969 -12.73487 -12.47722 -12.29672 -11.68972 -11.58563 -11.27529 -11.22603 -11.10424 -10.90861 -10.85101 -10.65478 -10.56244 -10.42762 -10.25207 -10.13772 -8.89128 -8.69099 -8.50612 -7.70342 -7.59060 -6.24117 -4.68847 1.55395 1.61912 2.48914 3.11545 3.19498 3.22379 3.35133 3.98130 4.08231 4.52273 4.71737 4.89379 5.07980 5.13483 5.25681 5.35798 5.44587 5.56305 5.68633 5.76773 5.83537 6.01255 6.07853 6.18876 6.32015 6.48398 6.63903 6.67105 6.69639 6.73624 6.87375 7.19366 7.20978 7.39748 7.81722 7.97796 8.18291 8.26477 8.98239 9.42569 10.53280 10.71173 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.020318 B = 0.005706 C = 0.004778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1377.779333 B = 4905.937339 C = 5858.746006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.085 4.085 3 H 0.100 0.900 4 C 0.483 3.517 5 O -0.518 6.518 6 O -0.506 6.506 7 C 0.204 3.796 8 H 0.089 0.911 9 N -0.755 5.755 10 C 0.554 3.446 11 O -0.570 6.570 12 C -0.545 4.545 13 H 0.068 0.932 14 C 0.089 3.911 15 N -0.764 5.764 16 Si 0.906 3.094 17 H -0.273 1.273 18 H -0.280 1.280 19 H -0.265 1.265 20 C -0.072 4.072 21 C -0.088 4.088 22 C -0.121 4.121 23 C -0.126 4.126 24 C -0.122 4.122 25 C -0.107 4.107 26 H 0.087 0.913 27 H 0.041 0.959 28 H 0.072 0.928 29 H 0.397 0.603 30 H 0.383 0.617 31 H 0.269 0.731 32 H 0.114 0.886 33 H 0.116 0.884 34 H 0.114 0.886 35 H 0.117 0.883 36 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.046 2.374 -5.819 15.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.106 4.106 3 H 0.118 0.882 4 C 0.325 3.675 5 O -0.406 6.406 6 O -0.317 6.317 7 C 0.096 3.904 8 H 0.107 0.893 9 N -0.411 5.411 10 C 0.359 3.641 11 O -0.452 6.452 12 C -0.582 4.582 13 H 0.086 0.914 14 C -0.131 4.131 15 N -0.392 5.392 16 Si 0.731 3.269 17 H -0.198 1.198 18 H -0.205 1.205 19 H -0.189 1.189 20 C -0.072 4.072 21 C -0.106 4.106 22 C -0.140 4.140 23 C -0.144 4.144 24 C -0.140 4.140 25 C -0.126 4.126 26 H 0.105 0.895 27 H 0.060 0.940 28 H 0.091 0.909 29 H 0.254 0.746 30 H 0.216 0.784 31 H 0.079 0.921 32 H 0.132 0.868 33 H 0.134 0.866 34 H 0.132 0.868 35 H 0.135 0.865 36 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 12.971 1.729 -6.067 14.423 hybrid contribution 0.178 0.552 0.290 0.648 sum 13.149 2.281 -5.777 14.542 Atomic orbital electron populations 1.21754 0.89986 1.04449 1.01857 1.21698 0.99214 0.99897 0.89837 0.88226 1.23770 0.79651 0.76672 0.87426 1.90683 1.57057 1.45991 1.46874 1.84781 1.26402 1.72988 1.47501 1.19284 0.87796 0.97932 0.85373 0.89320 1.46329 1.20495 1.45749 1.28531 1.18207 0.78395 0.82694 0.84808 1.90633 1.55876 1.36121 1.62562 1.20857 0.97860 1.28775 1.10698 0.91417 1.25669 0.96738 0.94026 0.96649 1.70009 1.07327 1.25856 1.36040 0.86386 0.79230 0.80050 0.81276 1.19811 1.20491 1.18922 1.20013 0.95136 0.94111 0.97987 1.20845 0.94041 0.97362 0.98386 1.20985 0.94095 0.98086 1.00785 1.21028 0.99308 0.93745 1.00365 1.21029 0.94183 0.98215 1.00534 1.20929 0.94123 0.97940 0.99589 0.89477 0.93996 0.90907 0.74624 0.78415 0.92055 0.86779 0.86634 0.86768 0.86504 0.86117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.55 7.01 37.16 0.26 -2.29 16 2 C -0.09 -1.49 2.61 -91.78 -0.24 -1.73 16 3 H 0.10 1.56 8.14 -51.93 -0.42 1.14 16 4 C 0.48 7.85 7.53 36.00 0.27 8.12 16 5 O -0.52 -9.92 16.74 -18.76 -0.31 -10.24 16 6 O -0.51 -6.34 10.03 -39.26 -0.39 -6.73 16 7 C 0.20 3.72 2.04 -69.08 -0.14 3.58 16 8 H 0.09 1.88 7.44 -51.93 -0.39 1.49 16 9 N -0.76 -15.57 4.91 -56.35 -0.28 -15.85 16 10 C 0.55 14.54 6.10 -12.99 -0.08 14.46 16 11 O -0.57 -16.85 12.16 5.20 0.06 -16.79 16 12 C -0.55 -14.58 9.53 -35.63 -0.34 -14.92 16 13 H 0.07 1.67 7.85 -52.49 -0.41 1.26 16 14 C 0.09 2.39 5.49 -17.37 -0.10 2.30 16 15 N -0.76 -21.99 11.85 55.55 0.66 -21.33 16 16 Si 0.91 19.54 29.56 -169.99 -5.03 14.51 16 17 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 18 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 19 H -0.27 -5.55 7.11 56.52 0.40 -5.14 16 20 C -0.07 -1.09 3.75 -104.62 -0.39 -1.48 16 21 C -0.09 -1.21 7.55 -39.59 -0.30 -1.51 16 22 C -0.12 -1.43 10.05 -39.58 -0.40 -1.83 16 23 C -0.13 -1.42 10.05 -39.58 -0.40 -1.82 16 24 C -0.12 -1.44 10.05 -39.58 -0.40 -1.84 16 25 C -0.11 -1.46 9.05 -39.58 -0.36 -1.82 16 26 H 0.09 2.03 5.77 -51.93 -0.30 1.73 16 27 H 0.04 0.79 8.10 -51.93 -0.42 0.37 16 28 H 0.07 1.70 7.48 -51.93 -0.39 1.31 16 29 H 0.40 3.30 9.10 45.56 0.41 3.72 16 30 H 0.38 7.00 6.85 -40.82 -0.28 6.72 16 31 H 0.27 7.08 8.29 -40.82 -0.34 6.74 16 32 H 0.11 1.54 8.04 -52.48 -0.42 1.11 16 33 H 0.12 1.10 8.06 -52.49 -0.42 0.67 16 34 H 0.11 1.01 8.06 -52.48 -0.42 0.59 16 35 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 36 H 0.12 1.54 6.92 -52.49 -0.36 1.18 16 LS Contribution 305.54 15.07 4.60 4.60 Total: -1.00 -33.27 305.54 -6.67 -39.94 By element: Atomic # 1 Polarization: 16.04 SS G_CDS: -3.38 Total: 12.65 kcal Atomic # 6 Polarization: 1.82 SS G_CDS: -2.61 Total: -0.78 kcal Atomic # 7 Polarization: -37.56 SS G_CDS: 0.38 Total: -37.17 kcal Atomic # 8 Polarization: -33.11 SS G_CDS: -0.64 Total: -33.75 kcal Atomic # 14 Polarization: 19.54 SS G_CDS: -5.03 Total: 14.51 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -33.27 -6.67 -39.94 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609638595.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.953 kcal (2) G-P(sol) polarization free energy of solvation -33.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds