Wall clock time and date at job start Mon Mar 30 2020 01:35:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.47141 * 2 1 4 4 C 1.50691 * 109.47627 * 239.99326 * 2 1 3 5 5 O 1.20835 * 119.99938 * 0.02562 * 4 2 1 6 6 O 1.34231 * 120.00289 * 179.97438 * 4 2 1 7 7 C 1.52998 * 109.46868 * 119.99102 * 2 1 3 8 8 H 1.08998 * 109.47145 * 60.00297 * 7 2 1 9 9 N 1.46498 * 109.47465 * 300.00442 * 7 2 1 10 10 C 1.34773 * 120.00156 * 85.00158 * 9 7 2 11 11 O 1.21688 * 120.00040 * 359.97438 * 10 9 7 12 12 C 1.46376 * 120.00372 * 180.02562 * 10 9 7 13 13 H 1.08002 * 119.99738 * 353.94656 * 12 10 9 14 14 C 1.40047 * 120.00302 * 173.94956 * 12 10 9 15 15 N 1.30672 * 120.00141 * 6.15024 * 14 12 10 16 16 Si 1.86803 * 119.99963 * 186.15553 * 14 12 10 17 17 H 1.48501 * 109.46900 * 94.98209 * 16 14 12 18 18 H 1.48496 * 109.47031 * 214.97921 * 16 14 12 19 19 H 1.48502 * 109.47115 * 334.98122 * 16 14 12 20 20 C 1.50703 * 109.47385 * 180.02562 * 7 2 1 21 21 C 1.38232 * 120.00398 * 260.00777 * 20 7 2 22 22 C 1.38231 * 120.00241 * 179.97438 * 21 20 7 23 23 C 1.38236 * 119.99914 * 359.97130 * 22 21 20 24 24 C 1.38235 * 120.00240 * 0.02562 * 23 22 21 25 25 C 1.38236 * 119.99650 * 79.97722 * 20 7 2 26 26 H 1.08997 * 109.47467 * 300.00491 * 1 2 3 27 27 H 1.09003 * 109.47072 * 60.00886 * 1 2 3 28 28 H 1.09007 * 109.47095 * 180.02562 * 1 2 3 29 29 H 0.96700 * 116.99696 * 179.97438 * 6 4 2 30 30 H 0.96999 * 120.00192 * 265.00050 * 9 7 2 31 31 H 0.96993 * 119.99955 * 180.02562 * 15 14 12 32 32 H 1.08005 * 119.99728 * 359.97183 * 21 20 7 33 33 H 1.07999 * 120.00100 * 179.97438 * 22 21 20 34 34 H 1.08003 * 120.00211 * 179.72834 * 23 22 21 35 35 H 1.07995 * 120.00588 * 179.97438 * 24 23 22 36 36 H 1.07998 * 120.00122 * 0.02562 * 25 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2303 5 8 1.2473 -1.1694 -2.0259 6 8 3.3522 -0.8327 -1.4429 7 6 2.0399 -0.7211 1.2494 8 1 1.6766 -1.7487 1.2495 9 7 1.5515 -0.0304 2.4454 10 6 0.3296 -0.3162 2.9369 11 8 -0.3682 -1.1477 2.3869 12 6 -0.1587 0.3743 4.1317 13 1 0.4952 1.0397 4.6759 14 6 -1.4736 0.1720 4.5692 15 7 -2.2265 -0.7217 3.9845 16 14 -2.1512 1.1800 5.9884 17 1 -2.8853 2.3554 5.4546 18 1 -3.0763 0.3423 6.7932 19 1 -1.0307 1.6437 6.8456 20 6 3.5470 -0.7206 1.2498 21 6 4.2387 -1.8452 0.8404 22 6 5.6210 -1.8445 0.8403 23 6 6.3116 -0.7190 1.2491 24 6 5.6200 0.4057 1.6584 25 6 4.2376 0.4048 1.6590 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3634 -1.0277 0.0005 29 1 3.6263 -1.2968 -2.2457 30 1 2.1076 0.6327 2.8837 31 1 -3.1373 -0.8615 4.2873 32 1 3.6991 -2.7244 0.5207 33 1 6.1614 -2.7233 0.5209 34 1 7.3917 -0.7199 1.2532 35 1 6.1595 1.2849 1.9781 36 1 3.6972 1.2835 1.9788 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001609638595.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:51 Heat of formation + Delta-G solvation = -129.426566 kcal Electronic energy + Delta-G solvation = -21885.853623 eV Core-core repulsion = 18526.789830 eV Total energy + Delta-G solvation = -3359.063793 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.74566 -40.26288 -39.17981 -37.12267 -36.35667 -34.52026 -33.17267 -31.84680 -31.56572 -28.53742 -27.08206 -25.22765 -23.54591 -22.45185 -21.81665 -20.81895 -19.37229 -19.11636 -17.90570 -17.71451 -17.16442 -17.04622 -16.20181 -16.01599 -15.58721 -15.30449 -15.08955 -14.50225 -14.38848 -14.14726 -13.98360 -13.74860 -13.18643 -13.10596 -12.95194 -12.76285 -12.60610 -12.52141 -12.46709 -12.32361 -12.00375 -11.81804 -11.69618 -11.58542 -10.89253 -9.81877 -9.65298 -9.52235 -9.44606 -8.25384 -6.79874 0.53816 0.64585 1.15285 1.42576 1.42845 1.58177 2.08744 2.27521 2.52098 2.96822 3.15324 3.53767 3.65167 3.92569 4.00127 4.16211 4.20362 4.29066 4.40125 4.56591 4.63115 4.76480 4.83393 4.84730 5.00594 5.17228 5.27566 5.35222 5.37857 5.60503 5.67336 5.73627 5.77155 5.93316 6.21607 6.23427 6.30190 6.92265 7.01798 7.56592 8.54145 8.71842 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.020318 B = 0.005706 C = 0.004778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1377.779333 B = 4905.937339 C = 5858.746006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.083 4.083 3 H 0.125 0.875 4 C 0.498 3.502 5 O -0.551 6.551 6 O -0.488 6.488 7 C 0.212 3.788 8 H 0.049 0.951 9 N -0.742 5.742 10 C 0.545 3.455 11 O -0.613 6.613 12 C -0.572 4.572 13 H 0.085 0.915 14 C 0.034 3.966 15 N -0.818 5.818 16 Si 0.991 3.009 17 H -0.265 1.265 18 H -0.277 1.277 19 H -0.249 1.249 20 C -0.090 4.090 21 C -0.101 4.101 22 C -0.118 4.118 23 C -0.120 4.120 24 C -0.120 4.120 25 C -0.117 4.117 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.034 0.966 29 H 0.420 0.580 30 H 0.396 0.604 31 H 0.272 0.728 32 H 0.107 0.893 33 H 0.141 0.859 34 H 0.146 0.854 35 H 0.144 0.856 36 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.160 3.982 -5.317 18.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.103 4.103 3 H 0.142 0.858 4 C 0.341 3.659 5 O -0.442 6.442 6 O -0.300 6.300 7 C 0.105 3.895 8 H 0.067 0.933 9 N -0.397 5.397 10 C 0.349 3.651 11 O -0.499 6.499 12 C -0.609 4.609 13 H 0.103 0.897 14 C -0.182 4.182 15 N -0.447 5.447 16 Si 0.811 3.189 17 H -0.190 1.190 18 H -0.202 1.202 19 H -0.172 1.172 20 C -0.091 4.091 21 C -0.120 4.120 22 C -0.136 4.136 23 C -0.137 4.137 24 C -0.138 4.138 25 C -0.135 4.135 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.053 0.947 29 H 0.281 0.719 30 H 0.232 0.768 31 H 0.082 0.918 32 H 0.125 0.875 33 H 0.159 0.841 34 H 0.164 0.836 35 H 0.162 0.838 36 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 16.173 3.355 -5.582 17.435 hybrid contribution -0.619 0.008 0.077 0.624 sum 15.554 3.363 -5.505 16.839 Atomic orbital electron populations 1.21489 0.92802 1.01600 1.00873 1.21522 0.96818 1.01494 0.90492 0.85773 1.23242 0.80550 0.75792 0.86317 1.90682 1.58226 1.47414 1.47891 1.84704 1.23729 1.72713 1.48823 1.19156 0.90414 0.95405 0.84555 0.93295 1.45937 1.19033 1.45633 1.29112 1.18445 0.79574 0.82160 0.84937 1.90605 1.57627 1.37901 1.63735 1.21385 0.98864 1.29272 1.11353 0.89652 1.26833 0.96855 0.94860 0.99607 1.70177 1.07951 1.28170 1.38429 0.85102 0.78648 0.78007 0.77150 1.18956 1.20176 1.17236 1.19723 0.92610 0.95847 1.00870 1.20899 0.95254 0.96709 0.99120 1.21274 0.93043 0.99396 0.99906 1.21455 1.00995 0.92883 0.98407 1.21361 0.93333 0.99505 0.99562 1.21041 0.95261 0.97433 0.99803 0.92557 0.92634 0.94676 0.71935 0.76843 0.91765 0.87521 0.84101 0.83579 0.83812 0.85729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.84 7.01 71.98 0.50 -4.33 16 2 C -0.08 -2.93 2.61 -11.54 -0.03 -2.96 16 3 H 0.12 3.79 8.14 -2.39 -0.02 3.77 16 4 C 0.50 16.09 7.53 71.23 0.54 16.62 16 5 O -0.55 -21.40 16.74 21.94 0.37 -21.03 16 6 O -0.49 -11.25 10.03 -51.43 -0.52 -11.77 16 7 C 0.21 7.99 2.04 44.25 0.09 8.08 16 8 H 0.05 2.23 7.44 -2.39 -0.02 2.21 16 9 N -0.74 -31.47 4.91 -450.41 -2.21 -33.68 16 10 C 0.54 29.86 6.10 86.36 0.53 30.39 16 11 O -0.61 -38.68 12.16 -4.31 -0.05 -38.73 16 12 C -0.57 -31.22 9.53 24.83 0.24 -30.99 16 13 H 0.09 4.19 7.85 -2.91 -0.02 4.17 16 14 C 0.03 1.85 5.49 85.30 0.47 2.31 16 15 N -0.82 -49.06 11.85 21.84 0.26 -48.81 16 16 Si 0.99 40.32 29.56 68.60 2.03 42.35 16 17 H -0.26 -10.35 7.11 99.48 0.71 -9.65 16 18 H -0.28 -11.02 7.11 99.48 0.71 -10.31 16 19 H -0.25 -9.40 7.11 99.48 0.71 -8.69 16 20 C -0.09 -2.65 3.75 -19.87 -0.07 -2.72 16 21 C -0.10 -2.65 7.55 22.27 0.17 -2.48 16 22 C -0.12 -2.38 10.05 22.27 0.22 -2.16 16 23 C -0.12 -2.15 10.05 22.27 0.22 -1.92 16 24 C -0.12 -2.36 10.05 22.27 0.22 -2.14 16 25 C -0.12 -2.92 9.05 22.27 0.20 -2.72 16 26 H 0.06 2.79 5.77 -2.39 -0.01 2.78 16 27 H 0.05 2.19 8.10 -2.39 -0.02 2.17 16 28 H 0.03 1.76 7.48 -2.38 -0.02 1.74 16 29 H 0.42 5.88 9.10 -74.06 -0.67 5.21 16 30 H 0.40 14.49 6.85 -92.71 -0.63 13.85 16 31 H 0.27 14.95 8.29 -92.71 -0.77 14.18 16 32 H 0.11 2.88 8.04 -2.91 -0.02 2.85 16 33 H 0.14 2.10 8.06 -2.91 -0.02 2.08 16 34 H 0.15 1.74 8.06 -2.91 -0.02 1.71 16 35 H 0.14 2.06 8.06 -2.91 -0.02 2.04 16 36 H 0.12 2.92 6.92 -2.91 -0.02 2.90 16 Total: -1.00 -76.67 305.54 2.99 -73.68 By element: Atomic # 1 Polarization: 33.20 SS G_CDS: -0.18 Total: 33.02 kcal Atomic # 6 Polarization: 1.68 SS G_CDS: 3.30 Total: 4.98 kcal Atomic # 7 Polarization: -80.53 SS G_CDS: -1.95 Total: -82.49 kcal Atomic # 8 Polarization: -71.33 SS G_CDS: -0.20 Total: -71.53 kcal Atomic # 14 Polarization: 40.32 SS G_CDS: 2.03 Total: 42.35 kcal Total: -76.67 2.99 -73.68 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609638595.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.745 kcal (2) G-P(sol) polarization free energy of solvation -76.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds