Wall clock time and date at job start Mon Mar 30 2020 01:35:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09006 * 109.46938 * 2 1 4 4 C 1.50696 * 109.47298 * 240.00806 * 2 1 3 5 5 O 1.20833 * 119.99655 * 359.97438 * 4 2 1 6 6 O 1.34231 * 120.00640 * 180.27355 * 4 2 1 7 7 C 1.53004 * 109.47494 * 120.00154 * 2 1 3 8 8 H 1.08998 * 109.46822 * 60.00540 * 7 2 1 9 9 N 1.46499 * 109.47024 * 179.97438 * 7 2 1 10 10 C 1.34777 * 120.00053 * 275.00196 * 9 7 2 11 11 O 1.21679 * 120.00064 * 0.02562 * 10 9 7 12 12 C 1.46378 * 119.99672 * 180.02562 * 10 9 7 13 13 H 1.08001 * 120.00043 * 0.02562 * 12 10 9 14 14 C 1.40049 * 119.99524 * 180.02562 * 12 10 9 15 15 N 1.30670 * 120.00375 * 359.97438 * 14 12 10 16 16 Si 1.86805 * 119.99642 * 180.02562 * 14 12 10 17 17 H 1.48500 * 109.47116 * 359.97438 * 16 14 12 18 18 H 1.48502 * 109.47234 * 119.99725 * 16 14 12 19 19 H 1.48499 * 109.46772 * 239.99686 * 16 14 12 20 20 C 1.50700 * 109.47218 * 300.00098 * 7 2 1 21 21 C 1.38236 * 120.00045 * 279.72730 * 20 7 2 22 22 C 1.38232 * 120.00033 * 179.81047 * 21 20 7 23 23 C 1.38237 * 119.99964 * 0.39506 * 22 21 20 24 24 C 1.38238 * 119.99757 * 359.85660 * 23 22 21 25 25 C 1.38234 * 119.99805 * 99.99588 * 20 7 2 26 26 H 1.09006 * 109.46938 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.47129 * 299.99213 * 1 2 3 28 28 H 1.08994 * 109.47515 * 59.99408 * 1 2 3 29 29 H 0.96693 * 117.00337 * 179.72181 * 6 4 2 30 30 H 0.97004 * 119.99658 * 95.00605 * 9 7 2 31 31 H 0.96999 * 119.99842 * 179.97438 * 15 14 12 32 32 H 1.08001 * 120.00140 * 359.97438 * 21 20 7 33 33 H 1.07996 * 119.99988 * 180.22996 * 22 21 20 34 34 H 1.07998 * 120.00374 * 179.83606 * 23 22 21 35 35 H 1.07999 * 120.00097 * 179.97438 * 24 23 22 36 36 H 1.07998 * 119.99913 * 359.97438 * 25 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7102 -1.2305 5 8 1.2471 -1.1697 -2.0257 6 8 3.3520 -0.8377 -1.4403 7 6 2.0401 -0.7213 1.2492 8 1 1.6768 -1.7490 1.2491 9 7 3.5051 -0.7218 1.2488 10 6 4.1785 -1.6781 0.5792 11 8 3.5696 -2.5409 -0.0253 12 6 5.6422 -1.6789 0.5793 13 1 6.1826 -0.9133 1.1163 14 6 6.3419 -2.6724 -0.1169 15 7 5.6882 -3.5989 -0.7661 16 14 8.2100 -2.6737 -0.1162 17 1 8.7055 -1.5275 0.6875 18 1 8.7039 -3.9434 0.4747 19 1 8.7055 -2.5510 -1.5107 20 6 1.5378 -0.0110 2.4798 21 6 2.1754 1.1310 2.9273 22 6 1.7123 1.7847 4.0538 23 6 0.6165 1.2920 4.7374 24 6 -0.0180 0.1471 4.2928 25 6 0.4428 -0.5045 3.1641 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5137 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 3.6261 -1.3046 -2.2414 30 1 3.9904 -0.0337 1.7305 31 1 6.1729 -4.2868 -1.2486 32 1 3.0338 1.5139 2.3954 33 1 2.2082 2.6790 4.4013 34 1 0.2562 1.8012 5.6190 35 1 -0.8738 -0.2381 4.8271 36 1 -0.0530 -1.3988 2.8166 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001609638596.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:53 Heat of formation + Delta-G solvation = -104.232001 kcal Electronic energy + Delta-G solvation = -22116.810208 eV Core-core repulsion = 18758.838933 eV Total energy + Delta-G solvation = -3357.971275 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.05627 -38.91943 -37.11382 -35.32651 -34.57988 -32.44638 -31.58842 -30.74180 -30.33372 -26.78745 -25.05626 -24.08937 -22.54926 -21.07686 -19.97388 -19.10749 -17.68067 -17.20606 -16.41241 -15.84678 -15.52799 -15.17950 -15.04122 -14.77728 -14.07879 -13.84634 -13.27101 -13.20793 -12.97875 -12.52289 -12.36001 -12.26354 -11.90926 -11.73807 -11.45103 -11.13098 -11.02912 -10.96734 -10.87448 -10.71695 -10.43521 -10.18463 -10.01857 -9.59963 -8.83505 -8.82260 -8.63223 -7.58486 -7.50686 -6.16353 -4.59190 1.43166 1.49182 3.11489 3.13358 3.22244 3.25567 3.87375 3.98653 4.11544 4.61568 4.72823 4.90000 5.01059 5.05732 5.20737 5.35281 5.44042 5.54126 5.61582 5.69481 5.88660 5.91625 6.06395 6.08476 6.17321 6.29329 6.37821 6.45665 6.55365 6.57764 6.79168 7.08381 7.45730 7.58304 7.90631 8.08748 8.34762 8.91711 9.06569 9.54660 10.63320 10.84514 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.019067 B = 0.006248 C = 0.005105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1468.143502 B = 4480.706356 C = 5483.595061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.092 4.092 3 H 0.098 0.902 4 C 0.499 3.501 5 O -0.546 6.546 6 O -0.468 6.468 7 C 0.202 3.798 8 H 0.089 0.911 9 N -0.758 5.758 10 C 0.580 3.420 11 O -0.578 6.578 12 C -0.538 4.538 13 H 0.063 0.937 14 C 0.091 3.909 15 N -0.770 5.770 16 Si 0.901 3.099 17 H -0.265 1.265 18 H -0.278 1.278 19 H -0.278 1.278 20 C -0.073 4.073 21 C -0.110 4.110 22 C -0.119 4.119 23 C -0.128 4.128 24 C -0.121 4.121 25 C -0.109 4.109 26 H 0.063 0.937 27 H 0.065 0.935 28 H 0.059 0.941 29 H 0.402 0.598 30 H 0.380 0.620 31 H 0.265 0.735 32 H 0.124 0.876 33 H 0.120 0.880 34 H 0.117 0.883 35 H 0.119 0.881 36 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.258 10.193 7.312 14.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.113 4.113 3 H 0.116 0.884 4 C 0.342 3.658 5 O -0.438 6.438 6 O -0.276 6.276 7 C 0.095 3.905 8 H 0.107 0.893 9 N -0.413 5.413 10 C 0.386 3.614 11 O -0.461 6.461 12 C -0.575 4.575 13 H 0.082 0.918 14 C -0.128 4.128 15 N -0.399 5.399 16 Si 0.727 3.273 17 H -0.189 1.189 18 H -0.204 1.204 19 H -0.203 1.203 20 C -0.073 4.073 21 C -0.128 4.128 22 C -0.137 4.137 23 C -0.146 4.146 24 C -0.139 4.139 25 C -0.127 4.127 26 H 0.082 0.918 27 H 0.084 0.916 28 H 0.079 0.921 29 H 0.261 0.739 30 H 0.213 0.787 31 H 0.076 0.924 32 H 0.142 0.858 33 H 0.138 0.862 34 H 0.135 0.865 35 H 0.137 0.863 36 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -7.975 9.449 6.888 14.154 hybrid contribution 1.409 0.037 -0.264 1.434 sum -6.566 9.486 6.624 13.303 Atomic orbital electron populations 1.21662 0.92458 1.03085 1.01897 1.21475 0.96895 1.00434 0.92486 0.88426 1.22794 0.80954 0.75984 0.86026 1.90592 1.57753 1.47836 1.47636 1.84683 1.24184 1.71131 1.47627 1.19291 0.84969 0.98309 0.87971 0.89312 1.46340 1.02320 1.33913 1.58716 1.17890 0.87997 0.78853 0.76698 1.90556 1.69797 1.39314 1.46438 1.20813 0.89710 1.13088 1.33916 0.91825 1.25619 0.99302 0.94308 0.93542 1.70020 1.35968 1.10356 1.23585 0.86421 0.83893 0.78646 0.78369 1.18945 1.20385 1.20333 1.20041 0.95475 0.95394 0.96421 1.21024 0.99764 0.95249 0.96800 1.21100 0.96923 0.99947 0.95777 1.21098 0.96645 0.96873 0.99966 1.21090 1.00080 0.95975 0.96741 1.21074 0.96406 0.99902 0.95325 0.91752 0.91568 0.92145 0.73910 0.78686 0.92413 0.85779 0.86235 0.86489 0.86266 0.85925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.98 8.08 37.16 0.30 -1.68 16 2 C -0.09 -1.59 2.61 -91.77 -0.24 -1.83 16 3 H 0.10 1.52 8.14 -51.93 -0.42 1.09 16 4 C 0.50 10.70 6.61 36.00 0.24 10.94 16 5 O -0.55 -12.86 16.74 -18.76 -0.31 -13.17 16 6 O -0.47 -10.59 8.29 -47.40 -0.39 -10.99 16 7 C 0.20 3.67 2.04 -69.08 -0.14 3.53 16 8 H 0.09 1.88 7.44 -51.93 -0.39 1.49 16 9 N -0.76 -15.76 4.81 -56.34 -0.27 -16.03 16 10 C 0.58 15.16 5.16 -12.99 -0.07 15.10 16 11 O -0.58 -16.97 11.78 -19.39 -0.23 -17.20 16 12 C -0.54 -14.40 9.54 -35.63 -0.34 -14.74 16 13 H 0.06 1.60 7.85 -52.49 -0.41 1.19 16 14 C 0.09 2.43 5.50 -17.37 -0.10 2.34 16 15 N -0.77 -21.93 11.83 55.55 0.66 -21.27 16 16 Si 0.90 19.66 29.56 -169.99 -5.02 14.63 16 17 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 18 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 19 H -0.28 -5.97 7.11 56.52 0.40 -5.56 16 20 C -0.07 -1.07 4.05 -104.62 -0.42 -1.49 16 21 C -0.11 -1.44 9.06 -39.58 -0.36 -1.80 16 22 C -0.12 -1.35 10.05 -39.58 -0.40 -1.74 16 23 C -0.13 -1.37 10.05 -39.58 -0.40 -1.77 16 24 C -0.12 -1.36 10.05 -39.58 -0.40 -1.76 16 25 C -0.11 -1.44 8.71 -39.58 -0.34 -1.78 16 26 H 0.06 1.02 8.10 -51.93 -0.42 0.60 16 27 H 0.07 0.84 6.64 -51.93 -0.34 0.49 16 28 H 0.06 0.87 8.10 -51.93 -0.42 0.45 16 29 H 0.40 8.77 9.10 45.56 0.41 9.19 16 30 H 0.38 7.09 6.84 -40.82 -0.28 6.81 16 31 H 0.27 6.96 8.29 -40.82 -0.34 6.62 16 32 H 0.12 1.55 6.90 -52.49 -0.36 1.18 16 33 H 0.12 1.08 8.06 -52.49 -0.42 0.65 16 34 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 35 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 36 H 0.12 1.54 8.04 -52.49 -0.42 1.12 16 LS Contribution 305.42 15.07 4.60 4.60 Total: -1.00 -33.37 305.42 -7.09 -40.47 By element: Atomic # 1 Polarization: 19.11 SS G_CDS: -3.46 Total: 15.65 kcal Atomic # 6 Polarization: 5.97 SS G_CDS: -2.66 Total: 3.31 kcal Atomic # 7 Polarization: -37.69 SS G_CDS: 0.39 Total: -37.30 kcal Atomic # 8 Polarization: -40.42 SS G_CDS: -0.94 Total: -41.36 kcal Atomic # 14 Polarization: 19.66 SS G_CDS: -5.02 Total: 14.63 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -33.37 -7.09 -40.47 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609638596.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.765 kcal (2) G-P(sol) polarization free energy of solvation -33.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds