Wall clock time and date at job start Mon Mar 30 2020 01:35:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09006 * 109.46938 * 2 1 4 4 C 1.50696 * 109.47298 * 240.00806 * 2 1 3 5 5 O 1.20833 * 119.99655 * 359.97438 * 4 2 1 6 6 O 1.34231 * 120.00640 * 180.27355 * 4 2 1 7 7 C 1.53004 * 109.47494 * 120.00154 * 2 1 3 8 8 H 1.08998 * 109.46822 * 60.00540 * 7 2 1 9 9 N 1.46499 * 109.47024 * 179.97438 * 7 2 1 10 10 C 1.34777 * 120.00053 * 275.00196 * 9 7 2 11 11 O 1.21679 * 120.00064 * 0.02562 * 10 9 7 12 12 C 1.46378 * 119.99672 * 180.02562 * 10 9 7 13 13 H 1.08001 * 120.00043 * 0.02562 * 12 10 9 14 14 C 1.40049 * 119.99524 * 180.02562 * 12 10 9 15 15 N 1.30670 * 120.00375 * 359.97438 * 14 12 10 16 16 Si 1.86805 * 119.99642 * 180.02562 * 14 12 10 17 17 H 1.48500 * 109.47116 * 359.97438 * 16 14 12 18 18 H 1.48502 * 109.47234 * 119.99725 * 16 14 12 19 19 H 1.48499 * 109.46772 * 239.99686 * 16 14 12 20 20 C 1.50700 * 109.47218 * 300.00098 * 7 2 1 21 21 C 1.38236 * 120.00045 * 279.72730 * 20 7 2 22 22 C 1.38232 * 120.00033 * 179.81047 * 21 20 7 23 23 C 1.38237 * 119.99964 * 0.39506 * 22 21 20 24 24 C 1.38238 * 119.99757 * 359.85660 * 23 22 21 25 25 C 1.38234 * 119.99805 * 99.99588 * 20 7 2 26 26 H 1.09006 * 109.46938 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.47129 * 299.99213 * 1 2 3 28 28 H 1.08994 * 109.47515 * 59.99408 * 1 2 3 29 29 H 0.96693 * 117.00337 * 179.72181 * 6 4 2 30 30 H 0.97004 * 119.99658 * 95.00605 * 9 7 2 31 31 H 0.96999 * 119.99842 * 179.97438 * 15 14 12 32 32 H 1.08001 * 120.00140 * 359.97438 * 21 20 7 33 33 H 1.07996 * 119.99988 * 180.22996 * 22 21 20 34 34 H 1.07998 * 120.00374 * 179.83606 * 23 22 21 35 35 H 1.07999 * 120.00097 * 179.97438 * 24 23 22 36 36 H 1.07998 * 119.99913 * 359.97438 * 25 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7102 -1.2305 5 8 1.2471 -1.1697 -2.0257 6 8 3.3520 -0.8377 -1.4403 7 6 2.0401 -0.7213 1.2492 8 1 1.6768 -1.7490 1.2491 9 7 3.5051 -0.7218 1.2488 10 6 4.1785 -1.6781 0.5792 11 8 3.5696 -2.5409 -0.0253 12 6 5.6422 -1.6789 0.5793 13 1 6.1826 -0.9133 1.1163 14 6 6.3419 -2.6724 -0.1169 15 7 5.6882 -3.5989 -0.7661 16 14 8.2100 -2.6737 -0.1162 17 1 8.7055 -1.5275 0.6875 18 1 8.7039 -3.9434 0.4747 19 1 8.7055 -2.5510 -1.5107 20 6 1.5378 -0.0110 2.4798 21 6 2.1754 1.1310 2.9273 22 6 1.7123 1.7847 4.0538 23 6 0.6165 1.2920 4.7374 24 6 -0.0180 0.1471 4.2928 25 6 0.4428 -0.5045 3.1641 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5137 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 3.6261 -1.3046 -2.2414 30 1 3.9904 -0.0337 1.7305 31 1 6.1729 -4.2868 -1.2486 32 1 3.0338 1.5139 2.3954 33 1 2.2082 2.6790 4.4013 34 1 0.2562 1.8012 5.6190 35 1 -0.8738 -0.2381 4.8271 36 1 -0.0530 -1.3988 2.8166 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001609638596.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:53 Heat of formation + Delta-G solvation = -126.625634 kcal Electronic energy + Delta-G solvation = -22117.781269 eV Core-core repulsion = 18758.838933 eV Total energy + Delta-G solvation = -3358.942336 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.58451 -40.22620 -38.90592 -36.97858 -36.29311 -34.45950 -33.22788 -31.70859 -31.50246 -28.60683 -26.63659 -25.50980 -23.54797 -22.29694 -21.76915 -20.69117 -19.35105 -18.96248 -17.75775 -17.40091 -17.27326 -16.93982 -16.37839 -16.00904 -15.59308 -15.23752 -14.69180 -14.46396 -14.33260 -14.15877 -13.89763 -13.64206 -13.26033 -13.16531 -12.92272 -12.83030 -12.63530 -12.47286 -12.29914 -12.07003 -11.95165 -11.84147 -11.77308 -11.29432 -10.83527 -9.77266 -9.73335 -9.53254 -9.35073 -8.17021 -6.69167 0.45387 0.57253 1.40239 1.42670 1.43747 1.58427 2.29002 2.37913 2.65068 2.90642 3.14147 3.64904 3.79868 3.97205 4.10794 4.11691 4.19339 4.26248 4.38177 4.54508 4.63941 4.71274 4.82952 4.85785 4.94882 5.12703 5.18145 5.23933 5.42420 5.63243 5.68903 5.73238 5.84413 6.02973 6.17170 6.31298 6.39137 7.01223 7.14744 7.68336 8.64971 8.85416 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.019067 B = 0.006248 C = 0.005105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1468.143502 B = 4480.706356 C = 5483.595061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.085 4.085 3 H 0.122 0.878 4 C 0.489 3.511 5 O -0.574 6.574 6 O -0.477 6.477 7 C 0.210 3.790 8 H 0.049 0.951 9 N -0.748 5.748 10 C 0.574 3.426 11 O -0.619 6.619 12 C -0.564 4.564 13 H 0.076 0.924 14 C 0.040 3.960 15 N -0.818 5.818 16 Si 0.982 3.018 17 H -0.252 1.252 18 H -0.276 1.276 19 H -0.272 1.272 20 C -0.091 4.091 21 C -0.118 4.118 22 C -0.117 4.117 23 C -0.120 4.120 24 C -0.119 4.119 25 C -0.121 4.121 26 H 0.047 0.953 27 H 0.094 0.906 28 H 0.066 0.934 29 H 0.399 0.601 30 H 0.392 0.608 31 H 0.268 0.732 32 H 0.127 0.873 33 H 0.147 0.853 34 H 0.149 0.851 35 H 0.144 0.856 36 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.114 12.558 9.645 17.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.106 4.106 3 H 0.140 0.860 4 C 0.335 3.665 5 O -0.468 6.468 6 O -0.285 6.285 7 C 0.103 3.897 8 H 0.068 0.932 9 N -0.402 5.402 10 C 0.379 3.621 11 O -0.505 6.505 12 C -0.601 4.601 13 H 0.094 0.906 14 C -0.175 4.175 15 N -0.448 5.448 16 Si 0.804 3.196 17 H -0.175 1.175 18 H -0.201 1.201 19 H -0.197 1.197 20 C -0.091 4.091 21 C -0.137 4.137 22 C -0.135 4.135 23 C -0.138 4.138 24 C -0.137 4.137 25 C -0.140 4.140 26 H 0.066 0.934 27 H 0.113 0.887 28 H 0.085 0.915 29 H 0.257 0.743 30 H 0.227 0.773 31 H 0.078 0.922 32 H 0.144 0.856 33 H 0.165 0.835 34 H 0.167 0.833 35 H 0.162 0.838 36 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -7.845 11.866 9.262 16.974 hybrid contribution 1.279 -0.661 -0.907 1.702 sum -6.566 11.206 8.355 15.443 Atomic orbital electron populations 1.21625 0.90391 1.02555 1.03526 1.21614 0.98476 1.00749 0.89737 0.86033 1.23750 0.80242 0.75621 0.86894 1.90560 1.58080 1.49210 1.48919 1.84683 1.25216 1.71030 1.47582 1.19197 0.83027 0.96990 0.90441 0.93231 1.45993 1.03767 1.32900 1.57545 1.18040 0.88366 0.79156 0.76576 1.90526 1.70635 1.41169 1.48195 1.21279 0.90544 1.13822 1.34486 0.90560 1.26647 1.04801 0.93469 0.92559 1.70179 1.38434 1.11398 1.24773 0.85191 0.76827 0.78949 0.78649 1.17493 1.20123 1.19742 1.19716 0.97096 0.96581 0.95748 1.21113 0.99889 0.94905 0.97767 1.21424 0.96946 1.00440 0.94697 1.21528 0.95716 0.96199 1.00372 1.21392 1.00633 0.95917 0.95771 1.21158 0.96338 1.00234 0.96270 0.93405 0.88735 0.91533 0.74315 0.77278 0.92189 0.85556 0.83543 0.83311 0.83774 0.86339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.60 8.08 71.98 0.58 -3.02 16 2 C -0.09 -2.95 2.61 -11.54 -0.03 -2.98 16 3 H 0.12 3.63 8.14 -2.38 -0.02 3.61 16 4 C 0.49 21.78 6.61 71.23 0.47 22.25 16 5 O -0.57 -28.13 16.74 21.94 0.37 -27.77 16 6 O -0.48 -22.65 8.29 -43.64 -0.36 -23.01 16 7 C 0.21 7.78 2.04 44.25 0.09 7.87 16 8 H 0.05 2.22 7.44 -2.39 -0.02 2.20 16 9 N -0.75 -31.56 4.81 -450.40 -2.17 -33.72 16 10 C 0.57 30.91 5.16 86.36 0.45 31.35 16 11 O -0.62 -38.11 11.78 19.24 0.23 -37.89 16 12 C -0.56 -30.58 9.54 24.83 0.24 -30.34 16 13 H 0.08 3.80 7.85 -2.91 -0.02 3.78 16 14 C 0.04 2.16 5.50 85.30 0.47 2.63 16 15 N -0.82 -48.09 11.83 21.84 0.26 -47.83 16 16 Si 0.98 40.50 29.56 68.60 2.03 42.52 16 17 H -0.25 -9.70 7.11 99.48 0.71 -9.00 16 18 H -0.28 -11.18 7.11 99.48 0.71 -10.47 16 19 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 20 C -0.09 -2.57 4.05 -19.87 -0.08 -2.65 16 21 C -0.12 -2.82 9.06 22.27 0.20 -2.62 16 22 C -0.12 -2.18 10.05 22.27 0.22 -1.95 16 23 C -0.12 -2.04 10.05 22.27 0.22 -1.81 16 24 C -0.12 -2.29 10.05 22.27 0.22 -2.07 16 25 C -0.12 -3.04 8.71 22.27 0.19 -2.84 16 26 H 0.05 1.54 8.10 -2.38 -0.02 1.52 16 27 H 0.09 2.22 6.64 -2.38 -0.02 2.20 16 28 H 0.07 1.86 8.10 -2.39 -0.02 1.84 16 29 H 0.40 18.69 9.10 -74.06 -0.67 18.02 16 30 H 0.39 14.51 6.84 -92.71 -0.63 13.87 16 31 H 0.27 14.54 8.29 -92.71 -0.77 13.77 16 32 H 0.13 2.87 6.90 -2.91 -0.02 2.85 16 33 H 0.15 1.93 8.06 -2.91 -0.02 1.91 16 34 H 0.15 1.61 8.06 -2.91 -0.02 1.59 16 35 H 0.14 2.02 8.06 -2.91 -0.02 2.00 16 36 H 0.12 2.97 8.04 -2.91 -0.02 2.94 16 Total: -1.00 -74.85 305.42 3.42 -71.43 By element: Atomic # 1 Polarization: 42.64 SS G_CDS: -0.18 Total: 42.46 kcal Atomic # 6 Polarization: 10.55 SS G_CDS: 3.25 Total: 13.80 kcal Atomic # 7 Polarization: -79.64 SS G_CDS: -1.91 Total: -81.55 kcal Atomic # 8 Polarization: -88.89 SS G_CDS: 0.23 Total: -88.66 kcal Atomic # 14 Polarization: 40.50 SS G_CDS: 2.03 Total: 42.52 kcal Total: -74.85 3.42 -71.43 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609638596.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.194 kcal (2) G-P(sol) polarization free energy of solvation -74.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds