Wall clock time and date at job start Mon Mar 30 2020 01:35:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09000 * 109.46925 * 2 1 4 4 C 1.50696 * 109.47432 * 119.99893 * 2 1 3 5 5 O 1.20827 * 120.00265 * 359.97438 * 4 2 1 6 6 O 1.34230 * 120.00134 * 180.02562 * 4 2 1 7 7 C 1.52997 * 109.47347 * 239.99961 * 2 1 3 8 8 H 1.09000 * 109.47140 * 299.99907 * 7 2 1 9 9 N 1.46500 * 109.47204 * 179.97438 * 7 2 1 10 10 C 1.34775 * 120.00366 * 85.00218 * 9 7 2 11 11 O 1.21689 * 119.99773 * 359.97438 * 10 9 7 12 12 C 1.46370 * 120.00161 * 179.97438 * 10 9 7 13 13 H 1.08001 * 120.00257 * 0.02562 * 12 10 9 14 14 C 1.40048 * 119.99795 * 179.97438 * 12 10 9 15 15 N 1.30673 * 120.00234 * 0.02562 * 14 12 10 16 16 Si 1.86803 * 120.00070 * 179.97438 * 14 12 10 17 17 H 1.48497 * 109.46914 * 90.00068 * 16 14 12 18 18 H 1.48502 * 109.47216 * 210.00213 * 16 14 12 19 19 H 1.48496 * 109.47037 * 330.00246 * 16 14 12 20 20 C 1.50706 * 109.47103 * 59.99953 * 7 2 1 21 21 C 1.38232 * 120.00224 * 79.72402 * 20 7 2 22 22 C 1.38238 * 120.00044 * 179.78577 * 21 20 7 23 23 C 1.38236 * 119.99765 * 0.45110 * 22 21 20 24 24 C 1.38237 * 120.00082 * 359.80327 * 23 22 21 25 25 C 1.38235 * 120.00175 * 359.97438 * 24 23 22 26 26 H 1.09000 * 109.46925 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47340 * 299.99692 * 1 2 3 28 28 H 1.09002 * 109.47726 * 60.00124 * 1 2 3 29 29 H 0.96702 * 116.99989 * 179.97438 * 6 4 2 30 30 H 0.97001 * 119.99882 * 265.00024 * 9 7 2 31 31 H 0.96996 * 120.00246 * 179.97438 * 15 14 12 32 32 H 1.08000 * 120.00018 * 0.02562 * 21 20 7 33 33 H 1.07991 * 120.00022 * 180.27364 * 22 21 20 34 34 H 1.07992 * 119.99873 * 179.83623 * 23 22 21 35 35 H 1.07993 * 119.99906 * 180.02562 * 24 23 22 36 36 H 1.07994 * 120.00582 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 8 1.2472 -1.1692 2.0261 6 8 3.3520 -0.8325 1.4431 7 6 2.0400 -0.7212 -1.2492 8 1 1.6767 -1.7489 -1.2492 9 7 3.5050 -0.7207 -1.2495 10 6 4.1794 -1.6764 -0.5800 11 8 3.5714 -2.5396 0.0250 12 6 5.6431 -1.6761 -0.5808 13 1 6.1827 -0.9098 -1.1175 14 6 6.3439 -2.6690 0.1153 15 7 5.6910 -3.5959 0.7650 16 14 8.2119 -2.6691 0.1138 17 1 8.7078 -1.8650 1.2594 18 1 8.7069 -4.0638 0.2367 19 1 8.7059 -2.0787 -1.1561 20 6 1.5376 -0.0108 -2.4797 21 6 2.1683 1.1375 -2.9208 22 6 1.7102 1.7866 -4.0521 23 6 0.6157 1.2926 -4.7369 24 6 -0.0182 0.1472 -4.2928 25 6 0.4427 -0.5045 -3.1642 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 3.6262 -1.2958 2.2463 30 1 3.9896 -0.0324 -1.7315 31 1 6.1764 -4.2838 1.2468 32 1 3.0213 1.5253 -2.3838 33 1 2.2056 2.6812 -4.3991 34 1 0.2562 1.8012 -5.6191 35 1 -0.8730 -0.2389 -4.8280 36 1 -0.0527 -1.3990 -2.8169 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001609638597.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:55 Heat of formation + Delta-G solvation = -104.444540 kcal Electronic energy + Delta-G solvation = -22115.097043 eV Core-core repulsion = 18757.116552 eV Total energy + Delta-G solvation = -3357.980491 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.05649 -38.92001 -37.11316 -35.32634 -34.58215 -32.44494 -31.58562 -30.74277 -30.33365 -26.78693 -25.05580 -24.09003 -22.54943 -21.07724 -19.97304 -19.10765 -17.67819 -17.20755 -16.41302 -15.84540 -15.52703 -15.17860 -15.04165 -14.77700 -14.07981 -13.84892 -13.27128 -13.20629 -12.97848 -12.51749 -12.35966 -12.26394 -11.90963 -11.73739 -11.45224 -11.11444 -11.03142 -10.97954 -10.87171 -10.71595 -10.42675 -10.20502 -10.02987 -9.60204 -8.82715 -8.82219 -8.63224 -7.58515 -7.50809 -6.16061 -4.59116 1.43194 1.49149 3.12016 3.14389 3.22107 3.24468 3.87348 3.98211 4.11642 4.61731 4.72868 4.89973 5.01114 5.05764 5.20727 5.35325 5.44002 5.54101 5.61488 5.69398 5.88686 5.91575 6.06380 6.08486 6.17321 6.29276 6.37679 6.45597 6.55318 6.57760 6.79195 7.08389 7.45709 7.58091 7.90652 8.08740 8.34543 8.91564 9.06553 9.54751 10.63524 10.84603 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.019060 B = 0.006247 C = 0.005105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1468.702144 B = 4481.238804 C = 5483.753696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.092 4.092 3 H 0.098 0.902 4 C 0.499 3.501 5 O -0.546 6.546 6 O -0.468 6.468 7 C 0.202 3.798 8 H 0.089 0.911 9 N -0.758 5.758 10 C 0.580 3.420 11 O -0.578 6.578 12 C -0.538 4.538 13 H 0.063 0.937 14 C 0.091 3.909 15 N -0.770 5.770 16 Si 0.902 3.098 17 H -0.273 1.273 18 H -0.281 1.281 19 H -0.267 1.267 20 C -0.073 4.073 21 C -0.110 4.110 22 C -0.119 4.119 23 C -0.128 4.128 24 C -0.121 4.121 25 C -0.109 4.109 26 H 0.063 0.937 27 H 0.060 0.940 28 H 0.065 0.935 29 H 0.402 0.598 30 H 0.380 0.620 31 H 0.266 0.734 32 H 0.124 0.876 33 H 0.120 0.880 34 H 0.117 0.883 35 H 0.119 0.881 36 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.270 10.188 -7.295 14.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.113 4.113 3 H 0.116 0.884 4 C 0.343 3.657 5 O -0.438 6.438 6 O -0.276 6.276 7 C 0.095 3.905 8 H 0.107 0.893 9 N -0.413 5.413 10 C 0.386 3.614 11 O -0.461 6.461 12 C -0.576 4.576 13 H 0.081 0.919 14 C -0.128 4.128 15 N -0.399 5.399 16 Si 0.727 3.273 17 H -0.199 1.199 18 H -0.207 1.207 19 H -0.191 1.191 20 C -0.073 4.073 21 C -0.128 4.128 22 C -0.137 4.137 23 C -0.146 4.146 24 C -0.139 4.139 25 C -0.127 4.127 26 H 0.082 0.918 27 H 0.079 0.921 28 H 0.084 0.916 29 H 0.261 0.739 30 H 0.213 0.787 31 H 0.076 0.924 32 H 0.142 0.858 33 H 0.138 0.862 34 H 0.135 0.865 35 H 0.137 0.863 36 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -7.987 9.437 -6.872 14.145 hybrid contribution 1.413 0.052 0.262 1.438 sum -6.574 9.489 -6.610 13.302 Atomic orbital electron populations 1.21660 0.92457 1.03086 1.01899 1.21474 0.96896 1.00427 0.92502 0.88417 1.22786 0.80941 0.75944 0.86048 1.90590 1.57763 1.47816 1.47646 1.84683 1.24194 1.71318 1.47455 1.19293 0.84965 0.98313 0.87964 0.89309 1.46337 1.02318 1.33924 1.58702 1.17883 0.87977 0.78868 0.76713 1.90559 1.69844 1.39279 1.46437 1.20775 0.89712 1.13106 1.33976 0.91874 1.25616 0.99297 0.94301 0.93545 1.70008 1.36064 1.10343 1.23502 0.86474 0.83855 0.77800 0.79176 1.19899 1.20670 1.19102 1.20045 0.95492 0.95331 0.96456 1.21025 0.99834 0.95203 0.96787 1.21100 0.96940 0.99990 0.95708 1.21096 0.96628 0.96875 0.99988 1.21089 1.00091 0.95963 0.96736 1.21076 0.96356 0.99932 0.95349 0.91753 0.92140 0.91572 0.73921 0.78688 0.92355 0.85783 0.86235 0.86490 0.86266 0.85925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.98 8.08 37.15 0.30 -1.68 16 2 C -0.09 -1.59 2.60 -91.78 -0.24 -1.83 16 3 H 0.10 1.52 8.14 -51.93 -0.42 1.10 16 4 C 0.50 10.71 6.59 36.00 0.24 10.94 16 5 O -0.55 -12.85 16.74 -18.75 -0.31 -13.17 16 6 O -0.47 -10.60 8.32 -47.39 -0.39 -10.99 16 7 C 0.20 3.67 2.04 -69.08 -0.14 3.53 16 8 H 0.09 1.88 7.44 -51.93 -0.39 1.49 16 9 N -0.76 -15.76 4.81 -56.34 -0.27 -16.03 16 10 C 0.58 15.17 5.17 -12.99 -0.07 15.10 16 11 O -0.58 -16.99 11.79 -19.37 -0.23 -17.22 16 12 C -0.54 -14.41 9.54 -35.63 -0.34 -14.75 16 13 H 0.06 1.58 7.85 -52.49 -0.41 1.17 16 14 C 0.09 2.44 5.50 -17.37 -0.10 2.34 16 15 N -0.77 -21.94 11.83 55.55 0.66 -21.28 16 16 Si 0.90 19.66 29.56 -169.99 -5.02 14.64 16 17 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 18 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 19 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 20 C -0.07 -1.07 4.05 -104.62 -0.42 -1.49 16 21 C -0.11 -1.44 9.05 -39.58 -0.36 -1.80 16 22 C -0.12 -1.35 10.05 -39.58 -0.40 -1.74 16 23 C -0.13 -1.37 10.05 -39.58 -0.40 -1.77 16 24 C -0.12 -1.36 10.05 -39.58 -0.40 -1.76 16 25 C -0.11 -1.44 8.71 -39.58 -0.34 -1.78 16 26 H 0.06 1.02 8.10 -51.93 -0.42 0.60 16 27 H 0.06 0.87 8.10 -51.93 -0.42 0.45 16 28 H 0.07 0.84 6.64 -51.93 -0.34 0.49 16 29 H 0.40 8.75 9.10 45.56 0.41 9.17 16 30 H 0.38 7.09 6.86 -40.82 -0.28 6.81 16 31 H 0.27 7.00 8.29 -40.82 -0.34 6.66 16 32 H 0.12 1.54 6.93 -52.49 -0.36 1.18 16 33 H 0.12 1.08 8.06 -52.49 -0.42 0.65 16 34 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 35 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 36 H 0.12 1.54 8.04 -52.49 -0.42 1.12 16 LS Contribution 305.49 15.07 4.60 4.60 Total: -1.00 -33.38 305.49 -7.10 -40.47 By element: Atomic # 1 Polarization: 19.12 SS G_CDS: -3.46 Total: 15.66 kcal Atomic # 6 Polarization: 5.98 SS G_CDS: -2.66 Total: 3.31 kcal Atomic # 7 Polarization: -37.70 SS G_CDS: 0.39 Total: -37.31 kcal Atomic # 8 Polarization: -40.44 SS G_CDS: -0.94 Total: -41.37 kcal Atomic # 14 Polarization: 19.66 SS G_CDS: -5.02 Total: 14.64 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -33.38 -7.10 -40.47 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609638597.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.972 kcal (2) G-P(sol) polarization free energy of solvation -33.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds