Wall clock time and date at job start Mon Mar 30 2020 01:35:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09000 * 109.46925 * 2 1 4 4 C 1.50696 * 109.47432 * 119.99893 * 2 1 3 5 5 O 1.20827 * 120.00265 * 359.97438 * 4 2 1 6 6 O 1.34230 * 120.00134 * 180.02562 * 4 2 1 7 7 C 1.52997 * 109.47347 * 239.99961 * 2 1 3 8 8 H 1.09000 * 109.47140 * 299.99907 * 7 2 1 9 9 N 1.46500 * 109.47204 * 179.97438 * 7 2 1 10 10 C 1.34775 * 120.00366 * 85.00218 * 9 7 2 11 11 O 1.21689 * 119.99773 * 359.97438 * 10 9 7 12 12 C 1.46370 * 120.00161 * 179.97438 * 10 9 7 13 13 H 1.08001 * 120.00257 * 0.02562 * 12 10 9 14 14 C 1.40048 * 119.99795 * 179.97438 * 12 10 9 15 15 N 1.30673 * 120.00234 * 0.02562 * 14 12 10 16 16 Si 1.86803 * 120.00070 * 179.97438 * 14 12 10 17 17 H 1.48497 * 109.46914 * 90.00068 * 16 14 12 18 18 H 1.48502 * 109.47216 * 210.00213 * 16 14 12 19 19 H 1.48496 * 109.47037 * 330.00246 * 16 14 12 20 20 C 1.50706 * 109.47103 * 59.99953 * 7 2 1 21 21 C 1.38232 * 120.00224 * 79.72402 * 20 7 2 22 22 C 1.38238 * 120.00044 * 179.78577 * 21 20 7 23 23 C 1.38236 * 119.99765 * 0.45110 * 22 21 20 24 24 C 1.38237 * 120.00082 * 359.80327 * 23 22 21 25 25 C 1.38235 * 120.00175 * 359.97438 * 24 23 22 26 26 H 1.09000 * 109.46925 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47340 * 299.99692 * 1 2 3 28 28 H 1.09002 * 109.47726 * 60.00124 * 1 2 3 29 29 H 0.96702 * 116.99989 * 179.97438 * 6 4 2 30 30 H 0.97001 * 119.99882 * 265.00024 * 9 7 2 31 31 H 0.96996 * 120.00246 * 179.97438 * 15 14 12 32 32 H 1.08000 * 120.00018 * 0.02562 * 21 20 7 33 33 H 1.07991 * 120.00022 * 180.27364 * 22 21 20 34 34 H 1.07992 * 119.99873 * 179.83623 * 23 22 21 35 35 H 1.07993 * 119.99906 * 180.02562 * 24 23 22 36 36 H 1.07994 * 120.00582 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 8 1.2472 -1.1692 2.0261 6 8 3.3520 -0.8325 1.4431 7 6 2.0400 -0.7212 -1.2492 8 1 1.6767 -1.7489 -1.2492 9 7 3.5050 -0.7207 -1.2495 10 6 4.1794 -1.6764 -0.5800 11 8 3.5714 -2.5396 0.0250 12 6 5.6431 -1.6761 -0.5808 13 1 6.1827 -0.9098 -1.1175 14 6 6.3439 -2.6690 0.1153 15 7 5.6910 -3.5959 0.7650 16 14 8.2119 -2.6691 0.1138 17 1 8.7078 -1.8650 1.2594 18 1 8.7069 -4.0638 0.2367 19 1 8.7059 -2.0787 -1.1561 20 6 1.5376 -0.0108 -2.4797 21 6 2.1683 1.1375 -2.9208 22 6 1.7102 1.7866 -4.0521 23 6 0.6157 1.2926 -4.7369 24 6 -0.0182 0.1472 -4.2928 25 6 0.4427 -0.5045 -3.1642 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 3.6262 -1.2958 2.2463 30 1 3.9896 -0.0324 -1.7315 31 1 6.1764 -4.2838 1.2468 32 1 3.0213 1.5253 -2.3838 33 1 2.2056 2.6812 -4.3991 34 1 0.2562 1.8012 -5.6191 35 1 -0.8730 -0.2389 -4.8280 36 1 -0.0527 -1.3990 -2.8169 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001609638597.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:55 Heat of formation + Delta-G solvation = -126.845852 kcal Electronic energy + Delta-G solvation = -22116.068437 eV Core-core repulsion = 18757.116552 eV Total energy + Delta-G solvation = -3358.951885 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.58441 -40.22709 -38.90491 -36.97929 -36.29451 -34.45840 -33.22659 -31.70895 -31.50206 -28.60610 -26.63634 -25.51048 -23.54764 -22.29712 -21.76906 -20.69142 -19.34862 -18.96397 -17.75648 -17.39874 -17.27268 -16.93873 -16.37926 -16.01195 -15.59459 -15.23805 -14.68870 -14.45848 -14.33042 -14.15936 -13.89780 -13.64177 -13.26411 -13.16886 -12.92781 -12.79198 -12.64626 -12.46510 -12.30041 -12.08260 -11.97483 -11.84531 -11.77884 -11.29591 -10.82001 -9.77466 -9.73348 -9.53307 -9.35143 -8.16770 -6.69156 0.45418 0.57226 1.40934 1.43444 1.44131 1.57087 2.29111 2.37577 2.65118 2.90651 3.14230 3.64867 3.79877 3.97204 4.10777 4.11722 4.19368 4.26179 4.38167 4.54414 4.63875 4.71257 4.82939 4.85768 4.94868 5.12708 5.18117 5.23958 5.42183 5.63221 5.68910 5.73270 5.84287 6.02896 6.17173 6.31225 6.39025 7.01162 7.14696 7.68371 8.64991 8.85402 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.019060 B = 0.006247 C = 0.005105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1468.702144 B = 4481.238804 C = 5483.753696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.085 4.085 3 H 0.122 0.878 4 C 0.490 3.510 5 O -0.574 6.574 6 O -0.477 6.477 7 C 0.210 3.790 8 H 0.050 0.950 9 N -0.748 5.748 10 C 0.574 3.426 11 O -0.619 6.619 12 C -0.565 4.565 13 H 0.076 0.924 14 C 0.040 3.960 15 N -0.818 5.818 16 Si 0.982 3.018 17 H -0.265 1.265 18 H -0.280 1.280 19 H -0.255 1.255 20 C -0.091 4.091 21 C -0.118 4.118 22 C -0.117 4.117 23 C -0.120 4.120 24 C -0.119 4.119 25 C -0.122 4.122 26 H 0.047 0.953 27 H 0.066 0.934 28 H 0.094 0.906 29 H 0.399 0.601 30 H 0.392 0.608 31 H 0.268 0.732 32 H 0.127 0.873 33 H 0.147 0.853 34 H 0.149 0.851 35 H 0.144 0.856 36 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.118 12.554 -9.631 17.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.106 4.106 3 H 0.140 0.860 4 C 0.335 3.665 5 O -0.468 6.468 6 O -0.285 6.285 7 C 0.103 3.897 8 H 0.068 0.932 9 N -0.402 5.402 10 C 0.379 3.621 11 O -0.505 6.505 12 C -0.602 4.602 13 H 0.094 0.906 14 C -0.175 4.175 15 N -0.448 5.448 16 Si 0.804 3.196 17 H -0.190 1.190 18 H -0.205 1.205 19 H -0.178 1.178 20 C -0.091 4.091 21 C -0.137 4.137 22 C -0.135 4.135 23 C -0.138 4.138 24 C -0.137 4.137 25 C -0.140 4.140 26 H 0.066 0.934 27 H 0.085 0.915 28 H 0.113 0.887 29 H 0.257 0.743 30 H 0.227 0.773 31 H 0.078 0.922 32 H 0.145 0.855 33 H 0.165 0.835 34 H 0.167 0.833 35 H 0.162 0.838 36 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -7.850 11.856 -9.248 16.962 hybrid contribution 1.280 -0.644 0.907 1.696 sum -6.569 11.212 -8.341 15.441 Atomic orbital electron populations 1.21623 0.90390 1.02559 1.03527 1.21613 0.98478 1.00739 0.89753 0.86025 1.23742 0.80231 0.75577 0.86924 1.90558 1.58090 1.49187 1.48930 1.84683 1.25224 1.71220 1.47419 1.19199 0.83024 0.96996 0.90436 0.93226 1.45990 1.03764 1.32910 1.57531 1.18036 0.88352 0.79169 0.76591 1.90529 1.70685 1.41134 1.48196 1.21251 0.90555 1.13854 1.34556 0.90554 1.26647 1.04808 0.93455 0.92552 1.70173 1.38504 1.11377 1.24701 0.85241 0.76782 0.77853 0.79754 1.18951 1.20516 1.17833 1.19720 0.97121 0.96514 0.95788 1.21114 0.99962 0.94836 0.97759 1.21425 0.96960 1.00493 0.94629 1.21526 0.95700 0.96198 1.00399 1.21390 1.00642 0.95908 0.95768 1.21160 0.96285 1.00268 0.96295 0.93401 0.91528 0.88740 0.74311 0.77278 0.92187 0.85546 0.83543 0.83316 0.83777 0.86340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.60 8.08 71.98 0.58 -3.02 16 2 C -0.09 -2.96 2.60 -11.54 -0.03 -2.99 16 3 H 0.12 3.64 8.14 -2.39 -0.02 3.62 16 4 C 0.49 21.80 6.59 71.23 0.47 22.27 16 5 O -0.57 -28.13 16.74 21.96 0.37 -27.76 16 6 O -0.48 -22.66 8.32 -43.64 -0.36 -23.02 16 7 C 0.21 7.78 2.04 44.25 0.09 7.87 16 8 H 0.05 2.22 7.44 -2.39 -0.02 2.20 16 9 N -0.75 -31.56 4.81 -450.40 -2.17 -33.73 16 10 C 0.57 30.92 5.17 86.36 0.45 31.36 16 11 O -0.62 -38.14 11.79 19.18 0.23 -37.92 16 12 C -0.57 -30.64 9.54 24.83 0.24 -30.40 16 13 H 0.08 3.79 7.85 -2.91 -0.02 3.77 16 14 C 0.04 2.17 5.50 85.30 0.47 2.64 16 15 N -0.82 -48.10 11.83 21.84 0.26 -47.84 16 16 Si 0.98 40.48 29.56 68.60 2.03 42.51 16 17 H -0.26 -10.45 7.11 99.48 0.71 -9.75 16 18 H -0.28 -11.36 7.11 99.48 0.71 -10.65 16 19 H -0.25 -9.90 7.11 99.48 0.71 -9.20 16 20 C -0.09 -2.57 4.05 -19.86 -0.08 -2.65 16 21 C -0.12 -2.82 9.05 22.27 0.20 -2.62 16 22 C -0.12 -2.18 10.05 22.27 0.22 -1.95 16 23 C -0.12 -2.04 10.05 22.27 0.22 -1.81 16 24 C -0.12 -2.29 10.05 22.27 0.22 -2.07 16 25 C -0.12 -3.04 8.71 22.27 0.19 -2.85 16 26 H 0.05 1.54 8.10 -2.39 -0.02 1.52 16 27 H 0.07 1.86 8.10 -2.39 -0.02 1.84 16 28 H 0.09 2.22 6.64 -2.39 -0.02 2.20 16 29 H 0.40 18.66 9.10 -74.06 -0.67 17.98 16 30 H 0.39 14.51 6.86 -92.71 -0.64 13.87 16 31 H 0.27 14.59 8.29 -92.71 -0.77 13.82 16 32 H 0.13 2.87 6.93 -2.91 -0.02 2.85 16 33 H 0.15 1.93 8.06 -2.92 -0.02 1.91 16 34 H 0.15 1.61 8.06 -2.91 -0.02 1.59 16 35 H 0.14 2.02 8.06 -2.91 -0.02 2.00 16 36 H 0.12 2.97 8.04 -2.91 -0.02 2.94 16 Total: -1.00 -74.87 305.49 3.41 -71.46 By element: Atomic # 1 Polarization: 42.72 SS G_CDS: -0.19 Total: 42.53 kcal Atomic # 6 Polarization: 10.52 SS G_CDS: 3.25 Total: 13.77 kcal Atomic # 7 Polarization: -79.66 SS G_CDS: -1.91 Total: -81.57 kcal Atomic # 8 Polarization: -88.93 SS G_CDS: 0.23 Total: -88.70 kcal Atomic # 14 Polarization: 40.48 SS G_CDS: 2.03 Total: 42.51 kcal Total: -74.87 3.41 -71.46 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609638597.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.390 kcal (2) G-P(sol) polarization free energy of solvation -74.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds