Wall clock time and date at job start Mon Mar 30 2020 01:51:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45205 * 109.47297 * 2 1 4 4 C 1.34829 * 116.99941 * 180.02562 * 3 2 1 5 5 C 1.34435 * 120.00037 * 180.02562 * 4 3 2 6 6 C 1.41762 * 120.00180 * 180.02562 * 5 4 3 7 7 O 1.21741 * 120.00006 * 359.97438 * 6 5 4 8 8 N 1.34782 * 119.99905 * 180.02562 * 6 5 4 9 9 C 1.39845 * 119.99948 * 175.50392 * 8 6 5 10 10 C 1.38981 * 120.03602 * 215.15566 * 9 8 6 11 11 C 1.38155 * 120.06702 * 179.97438 * 10 9 8 12 12 C 1.38179 * 120.13751 * 359.76599 * 11 10 9 13 13 C 1.38914 * 120.07097 * 0.51344 * 12 11 10 14 14 O 1.35751 * 120.02823 * 179.74398 * 13 12 11 15 15 C 1.34827 * 117.00215 * 354.34230 * 14 13 12 16 16 H 1.08008 * 119.99817 * 5.03000 * 15 14 13 17 17 C 1.38657 * 120.00344 * 185.02919 * 15 14 13 18 18 N 1.31555 * 119.99822 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00010 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47074 * 359.97438 * 19 17 15 21 21 H 1.48508 * 109.46722 * 119.99888 * 19 17 15 22 22 H 1.48492 * 109.46954 * 239.99614 * 19 17 15 23 23 C 1.38730 * 120.03884 * 35.13086 * 9 8 6 24 24 H 1.09000 * 109.46786 * 299.99483 * 1 2 3 25 25 H 1.08997 * 109.47084 * 59.99695 * 1 2 3 26 26 H 1.09000 * 109.47279 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46786 * 240.00517 * 2 1 3 28 28 H 1.09000 * 109.47800 * 120.00376 * 2 1 3 29 29 H 1.07997 * 120.00696 * 0.02562 * 4 3 2 30 30 H 1.08001 * 119.99901 * 0.02562 * 5 4 3 31 31 H 0.97005 * 119.99738 * 355.49741 * 8 6 5 32 32 H 1.08003 * 119.96792 * 359.97438 * 10 9 8 33 33 H 1.07993 * 119.93311 * 180.02562 * 11 10 9 34 34 H 1.07996 * 119.95985 * 180.27253 * 12 11 10 35 35 H 0.96996 * 119.99970 * 180.02562 * 18 17 15 36 36 H 1.07999 * 120.06916 * 0.04343 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3690 0.0000 4 6 3.3507 1.5456 -0.0005 5 6 3.8646 2.7879 0.0000 6 6 5.2700 2.9736 -0.0012 7 8 6.0116 2.0081 -0.0021 8 7 5.7852 4.2191 -0.0001 9 6 7.1682 4.4036 0.0937 10 6 7.6792 5.4900 0.7938 11 6 9.0454 5.6726 0.8874 12 6 9.9080 4.7737 0.2897 13 6 9.4035 3.6891 -0.4164 14 8 10.2517 2.8094 -1.0076 15 6 11.5660 3.1082 -0.9722 16 1 11.9091 3.9702 -0.4192 17 6 12.4771 2.3089 -1.6457 18 7 12.0593 1.2587 -2.3189 19 14 14.2981 2.7226 -1.5960 20 1 14.5062 3.9435 -0.7766 21 1 15.0469 1.5893 -0.9957 22 1 14.7886 2.9641 -2.9766 23 6 8.0318 3.5021 -0.5115 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8935 -0.5139 0.8899 29 1 4.0087 0.6892 -0.0014 30 1 3.2068 3.6444 0.0012 31 1 5.1966 4.9874 -0.0646 32 1 7.0076 6.1922 1.2653 33 1 9.4401 6.5173 1.4323 34 1 10.9756 4.9169 0.3684 35 1 12.6967 0.6994 -2.7897 36 1 7.6373 2.6573 -1.0564 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001624808495.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:47 Heat of formation + Delta-G solvation = -54.163122 kcal Electronic energy + Delta-G solvation = -20027.180942 eV Core-core repulsion = 16671.380816 eV Total energy + Delta-G solvation = -3355.800125 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.19822 -39.19395 -38.46149 -36.45196 -33.94324 -33.02640 -32.18473 -30.98436 -29.31351 -28.28392 -25.27603 -24.08869 -23.25950 -21.81114 -21.05800 -19.72089 -18.21350 -17.99870 -17.18017 -16.30421 -16.22453 -15.84670 -14.98895 -14.88247 -14.78000 -14.14579 -14.06512 -13.60076 -13.46195 -13.31111 -12.99173 -12.71073 -12.43555 -12.40278 -11.68410 -11.61154 -11.48357 -11.37769 -11.13147 -10.96990 -10.70557 -10.40192 -9.71118 -9.63686 -9.09498 -8.82189 -8.76222 -7.58576 -7.09862 -6.36750 -3.95537 1.30138 2.25217 2.43070 2.68415 3.17255 3.18353 3.24295 3.59398 3.70216 4.04282 4.47618 4.51632 4.66884 4.72656 4.83163 5.11450 5.18014 5.33593 5.36655 5.47854 5.55159 5.69787 5.71936 5.92000 6.01029 6.18112 6.33309 6.48102 6.80808 6.95858 7.04509 7.11957 7.17864 7.42068 7.55897 7.85133 7.89347 8.08868 8.53215 9.08504 9.81311 10.81524 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.024271 B = 0.003267 C = 0.002904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.359015 B = 8569.434384 C = 9639.749408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.051 3.949 3 O -0.322 6.322 4 C 0.144 3.856 5 C -0.299 4.299 6 C 0.560 3.440 7 O -0.533 6.533 8 N -0.667 5.667 9 C 0.177 3.823 10 C -0.236 4.236 11 C -0.060 4.060 12 C -0.247 4.247 13 C 0.166 3.834 14 O -0.175 6.175 15 C -0.390 4.390 16 H 0.093 0.907 17 C 0.038 3.962 18 N -0.862 5.862 19 Si 0.941 3.059 20 H -0.267 1.267 21 H -0.276 1.276 22 H -0.276 1.276 23 C -0.186 4.186 24 H 0.067 0.933 25 H 0.067 0.933 26 H 0.080 0.920 27 H 0.070 0.930 28 H 0.069 0.931 29 H 0.141 0.859 30 H 0.130 0.870 31 H 0.406 0.594 32 H 0.108 0.892 33 H 0.111 0.889 34 H 0.127 0.873 35 H 0.269 0.731 36 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.143 2.178 4.751 19.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.023 4.023 3 O -0.234 6.234 4 C 0.077 3.923 5 C -0.322 4.322 6 C 0.352 3.648 7 O -0.412 6.412 8 N -0.311 5.311 9 C 0.084 3.916 10 C -0.257 4.257 11 C -0.079 4.079 12 C -0.266 4.266 13 C 0.111 3.889 14 O -0.078 6.078 15 C -0.466 4.466 16 H 0.110 0.890 17 C -0.166 4.166 18 N -0.497 5.497 19 Si 0.766 3.234 20 H -0.191 1.191 21 H -0.202 1.202 22 H -0.202 1.202 23 C -0.207 4.207 24 H 0.086 0.914 25 H 0.086 0.914 26 H 0.099 0.901 27 H 0.088 0.912 28 H 0.088 0.912 29 H 0.158 0.842 30 H 0.148 0.852 31 H 0.241 0.759 32 H 0.126 0.874 33 H 0.129 0.871 34 H 0.145 0.855 35 H 0.078 0.922 36 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -18.781 1.190 4.497 19.349 hybrid contribution 0.693 0.535 0.062 0.877 sum -18.089 1.725 4.559 18.734 Atomic orbital electron populations 1.21783 0.92578 1.03056 1.03672 1.23379 0.96282 0.80329 1.02313 1.86232 1.20515 1.30265 1.86353 1.23037 0.83059 0.98524 0.87717 1.20750 0.94804 0.97341 1.19267 1.16699 0.88199 0.83101 0.76774 1.90894 1.61523 1.39567 1.49198 1.43214 1.06189 1.08420 1.73261 1.17186 0.81452 0.96163 0.96842 1.20291 0.95419 1.01606 1.08389 1.20494 0.92405 0.97571 0.97406 1.21173 1.00480 0.98496 1.06493 1.19158 0.90134 0.88548 0.91011 1.83994 1.17274 1.40634 1.65939 1.21397 0.79002 1.13335 1.32907 0.88970 1.25299 1.00184 0.95478 0.95684 1.70066 1.35113 1.14465 1.30070 0.85644 0.80749 0.78630 0.78355 1.19104 1.20207 1.20212 1.20200 0.90172 1.03427 1.06907 0.91413 0.91371 0.90134 0.91170 0.91229 0.84191 0.85170 0.75912 0.87411 0.87112 0.85517 0.92154 0.84783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.76 10.29 37.16 0.38 -0.38 16 2 C 0.05 0.34 6.85 37.16 0.25 0.60 16 3 O -0.32 -3.20 10.17 -16.22 -0.17 -3.36 16 4 C 0.14 1.66 9.91 29.39 0.29 1.95 16 5 C -0.30 -3.79 9.71 -39.58 -0.38 -4.18 16 6 C 0.56 9.39 7.40 -14.91 -0.11 9.28 16 7 O -0.53 -11.31 13.53 5.15 0.07 -11.24 16 8 N -0.67 -10.54 5.32 -12.45 -0.07 -10.61 16 9 C 0.18 3.50 6.29 -83.74 -0.53 2.98 16 10 C -0.24 -4.25 9.96 -39.34 -0.39 -4.64 16 11 C -0.06 -1.14 10.03 -39.63 -0.40 -1.54 16 12 C -0.25 -5.62 9.17 -39.35 -0.36 -5.98 16 13 C 0.17 4.32 6.64 -39.14 -0.26 4.06 16 14 O -0.18 -5.30 9.76 0.05 0.00 -5.30 16 15 C -0.39 -11.32 9.49 30.89 0.29 -11.03 16 16 H 0.09 2.47 5.20 -52.48 -0.27 2.19 16 17 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 18 N -0.86 -26.20 13.67 55.48 0.76 -25.44 16 19 Si 0.94 21.11 29.55 -169.99 -5.02 16.08 16 20 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 21 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 22 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 23 C -0.19 -4.47 8.63 -39.20 -0.34 -4.80 16 24 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 25 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 27 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 28 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.14 1.62 7.38 -52.49 -0.39 1.23 16 30 H 0.13 1.33 8.06 -52.49 -0.42 0.91 16 31 H 0.41 4.69 8.78 -40.82 -0.36 4.33 16 32 H 0.11 1.57 8.06 -52.48 -0.42 1.15 16 33 H 0.11 1.73 8.06 -52.49 -0.42 1.30 16 34 H 0.13 2.86 5.63 -52.49 -0.30 2.56 16 35 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 36 H 0.13 3.45 6.23 -52.49 -0.33 3.12 16 LS Contribution 319.63 15.07 4.82 4.82 Total: -1.00 -35.44 319.63 -5.41 -40.86 By element: Atomic # 1 Polarization: 11.07 SS G_CDS: -4.16 Total: 6.91 kcal Atomic # 6 Polarization: -11.07 SS G_CDS: -1.65 Total: -12.72 kcal Atomic # 7 Polarization: -36.74 SS G_CDS: 0.69 Total: -36.05 kcal Atomic # 8 Polarization: -19.81 SS G_CDS: -0.09 Total: -19.90 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -35.44 -5.41 -40.86 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001624808495.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.307 kcal (2) G-P(sol) polarization free energy of solvation -35.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds