Wall clock time and date at job start Mon Mar 30 2020 01:51:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45205 * 109.47297 * 2 1 4 4 C 1.34829 * 116.99941 * 180.02562 * 3 2 1 5 5 C 1.34435 * 120.00037 * 180.02562 * 4 3 2 6 6 C 1.41762 * 120.00180 * 180.02562 * 5 4 3 7 7 O 1.21741 * 120.00006 * 359.97438 * 6 5 4 8 8 N 1.34782 * 119.99905 * 180.02562 * 6 5 4 9 9 C 1.39845 * 119.99948 * 175.50392 * 8 6 5 10 10 C 1.38981 * 120.03602 * 215.15566 * 9 8 6 11 11 C 1.38155 * 120.06702 * 179.97438 * 10 9 8 12 12 C 1.38179 * 120.13751 * 359.76599 * 11 10 9 13 13 C 1.38914 * 120.07097 * 0.51344 * 12 11 10 14 14 O 1.35751 * 120.02823 * 179.74398 * 13 12 11 15 15 C 1.34827 * 117.00215 * 354.34230 * 14 13 12 16 16 H 1.08008 * 119.99817 * 5.03000 * 15 14 13 17 17 C 1.38657 * 120.00344 * 185.02919 * 15 14 13 18 18 N 1.31555 * 119.99822 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00010 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47074 * 359.97438 * 19 17 15 21 21 H 1.48508 * 109.46722 * 119.99888 * 19 17 15 22 22 H 1.48492 * 109.46954 * 239.99614 * 19 17 15 23 23 C 1.38730 * 120.03884 * 35.13086 * 9 8 6 24 24 H 1.09000 * 109.46786 * 299.99483 * 1 2 3 25 25 H 1.08997 * 109.47084 * 59.99695 * 1 2 3 26 26 H 1.09000 * 109.47279 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46786 * 240.00517 * 2 1 3 28 28 H 1.09000 * 109.47800 * 120.00376 * 2 1 3 29 29 H 1.07997 * 120.00696 * 0.02562 * 4 3 2 30 30 H 1.08001 * 119.99901 * 0.02562 * 5 4 3 31 31 H 0.97005 * 119.99738 * 355.49741 * 8 6 5 32 32 H 1.08003 * 119.96792 * 359.97438 * 10 9 8 33 33 H 1.07993 * 119.93311 * 180.02562 * 11 10 9 34 34 H 1.07996 * 119.95985 * 180.27253 * 12 11 10 35 35 H 0.96996 * 119.99970 * 180.02562 * 18 17 15 36 36 H 1.07999 * 120.06916 * 0.04343 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3690 0.0000 4 6 3.3507 1.5456 -0.0005 5 6 3.8646 2.7879 0.0000 6 6 5.2700 2.9736 -0.0012 7 8 6.0116 2.0081 -0.0021 8 7 5.7852 4.2191 -0.0001 9 6 7.1682 4.4036 0.0937 10 6 7.6792 5.4900 0.7938 11 6 9.0454 5.6726 0.8874 12 6 9.9080 4.7737 0.2897 13 6 9.4035 3.6891 -0.4164 14 8 10.2517 2.8094 -1.0076 15 6 11.5660 3.1082 -0.9722 16 1 11.9091 3.9702 -0.4192 17 6 12.4771 2.3089 -1.6457 18 7 12.0593 1.2587 -2.3189 19 14 14.2981 2.7226 -1.5960 20 1 14.5062 3.9435 -0.7766 21 1 15.0469 1.5893 -0.9957 22 1 14.7886 2.9641 -2.9766 23 6 8.0318 3.5021 -0.5115 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8935 -0.5139 0.8899 29 1 4.0087 0.6892 -0.0014 30 1 3.2068 3.6444 0.0012 31 1 5.1966 4.9874 -0.0646 32 1 7.0076 6.1922 1.2653 33 1 9.4401 6.5173 1.4323 34 1 10.9756 4.9169 0.3684 35 1 12.6967 0.6994 -2.7897 36 1 7.6373 2.6573 -1.0564 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001624808495.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:46 Heat of formation + Delta-G solvation = -80.021542 kcal Electronic energy + Delta-G solvation = -20028.302247 eV Core-core repulsion = 16671.380816 eV Total energy + Delta-G solvation = -3356.921431 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.62487 -40.45505 -39.86457 -38.19496 -35.49167 -34.25201 -33.83458 -31.88470 -30.99199 -29.85881 -27.33963 -25.25081 -23.99792 -23.37423 -22.69351 -21.00673 -19.96932 -19.16326 -18.85156 -17.57879 -17.19044 -16.97487 -16.73792 -16.36133 -16.17791 -15.82429 -15.54666 -15.43482 -14.89245 -14.43010 -14.22166 -13.94695 -13.58378 -13.41182 -13.18730 -13.11911 -12.90705 -12.68248 -12.34797 -12.32148 -12.08317 -11.95567 -11.45396 -11.26127 -10.81704 -10.74209 -9.81003 -9.29104 -8.83202 -8.45846 -6.15234 0.14176 0.65207 0.73717 1.35042 1.44709 1.54983 1.79073 2.18210 2.32798 2.52154 2.85790 3.17910 3.54623 3.69503 4.04833 4.11116 4.15823 4.28172 4.35634 4.37935 4.44687 4.61871 4.73562 4.77470 4.90350 4.94286 5.02480 5.11510 5.16780 5.25123 5.47086 5.50820 5.65298 5.75819 6.04700 6.15084 6.23455 6.55241 6.97938 7.25516 7.81313 8.78497 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.024271 B = 0.003267 C = 0.002904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.359015 B = 8569.434384 C = 9639.749408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.040 3.960 3 O -0.323 6.323 4 C 0.166 3.834 5 C -0.314 4.314 6 C 0.556 3.444 7 O -0.589 6.589 8 N -0.653 5.653 9 C 0.184 3.816 10 C -0.205 4.205 11 C -0.049 4.049 12 C -0.256 4.256 13 C 0.125 3.875 14 O -0.236 6.236 15 C -0.413 4.413 16 H 0.107 0.893 17 C -0.029 4.029 18 N -0.925 5.925 19 Si 1.025 2.975 20 H -0.247 1.247 21 H -0.269 1.269 22 H -0.268 1.268 23 C -0.213 4.213 24 H 0.066 0.934 25 H 0.065 0.935 26 H 0.101 0.899 27 H 0.078 0.922 28 H 0.081 0.919 29 H 0.134 0.866 30 H 0.161 0.839 31 H 0.430 0.570 32 H 0.163 0.837 33 H 0.160 0.840 34 H 0.124 0.876 35 H 0.272 0.728 36 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.822 4.954 6.588 22.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.034 4.034 3 O -0.235 6.235 4 C 0.098 3.902 5 C -0.336 4.336 6 C 0.352 3.648 7 O -0.472 6.472 8 N -0.299 5.299 9 C 0.089 3.911 10 C -0.226 4.226 11 C -0.067 4.067 12 C -0.276 4.276 13 C 0.074 3.926 14 O -0.143 6.143 15 C -0.489 4.489 16 H 0.124 0.876 17 C -0.225 4.225 18 N -0.564 5.564 19 Si 0.844 3.156 20 H -0.170 1.170 21 H -0.194 1.194 22 H -0.193 1.193 23 C -0.235 4.235 24 H 0.086 0.914 25 H 0.084 0.916 26 H 0.119 0.881 27 H 0.097 0.903 28 H 0.099 0.901 29 H 0.151 0.849 30 H 0.179 0.821 31 H 0.270 0.730 32 H 0.181 0.819 33 H 0.178 0.822 34 H 0.141 0.859 35 H 0.081 0.919 36 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -20.561 4.037 6.361 21.898 hybrid contribution 0.805 -0.269 -0.388 0.933 sum -19.756 3.767 5.973 20.981 Atomic orbital electron populations 1.21818 0.91035 1.04377 1.03532 1.23745 0.97497 0.78763 1.03365 1.86235 1.19241 1.32625 1.85371 1.23022 0.83805 0.98136 0.85276 1.20595 0.92634 0.98916 1.21448 1.17337 0.89568 0.82513 0.75412 1.90891 1.63104 1.41300 1.51886 1.43123 1.04816 1.09365 1.72619 1.17360 0.82855 0.95393 0.95507 1.20911 0.95940 1.00518 1.05212 1.21039 0.92384 0.97468 0.95857 1.21326 1.01160 0.98406 1.06703 1.19687 0.90552 0.89878 0.92443 1.83959 1.18196 1.43332 1.68767 1.21967 0.79263 1.14131 1.33544 0.87609 1.26728 1.05915 0.95019 0.94851 1.70232 1.37288 1.16494 1.32353 0.84452 0.73104 0.79137 0.78955 1.17009 1.19421 1.19289 1.20216 0.90419 1.04165 1.08709 0.91449 0.91591 0.88093 0.90344 0.90112 0.84894 0.82106 0.72978 0.81910 0.82202 0.85854 0.91900 0.88073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 10.29 71.98 0.74 -0.43 16 2 C 0.04 0.46 6.85 71.98 0.49 0.95 16 3 O -0.32 -5.82 10.17 -80.96 -0.82 -6.65 16 4 C 0.17 3.68 9.91 66.95 0.66 4.34 16 5 C -0.31 -7.47 9.71 22.27 0.22 -7.26 16 6 C 0.56 18.52 7.40 85.11 0.63 19.15 16 7 O -0.59 -26.24 13.53 -4.48 -0.06 -26.30 16 8 N -0.65 -19.41 5.32 -311.48 -1.66 -21.07 16 9 C 0.18 7.03 6.29 38.16 0.24 7.27 16 10 C -0.21 -6.47 9.96 22.43 0.22 -6.24 16 11 C -0.05 -1.68 10.03 22.24 0.22 -1.46 16 12 C -0.26 -11.66 9.17 22.42 0.21 -11.45 16 13 C 0.13 6.88 6.64 22.56 0.15 7.03 16 14 O -0.24 -15.44 9.76 -22.72 -0.22 -15.66 16 15 C -0.41 -25.34 9.49 67.92 0.64 -24.69 16 16 H 0.11 5.87 5.20 -2.91 -0.02 5.86 16 17 C -0.03 -1.70 5.49 84.83 0.47 -1.23 16 18 N -0.93 -59.88 13.67 21.61 0.30 -59.58 16 19 Si 1.02 44.50 29.55 68.60 2.03 46.52 16 20 H -0.25 -9.76 7.11 99.48 0.71 -9.05 16 21 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 22 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 23 C -0.21 -10.78 8.63 22.51 0.19 -10.58 16 24 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 25 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 26 H 0.10 0.40 8.14 -2.39 -0.02 0.38 16 27 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.13 3.12 7.38 -2.91 -0.02 3.10 16 30 H 0.16 2.76 8.06 -2.91 -0.02 2.74 16 31 H 0.43 8.34 8.78 -92.70 -0.81 7.53 16 32 H 0.16 3.49 8.06 -2.91 -0.02 3.46 16 33 H 0.16 3.98 8.06 -2.91 -0.02 3.95 16 34 H 0.12 5.59 5.63 -2.91 -0.02 5.57 16 35 H 0.27 16.01 8.31 -92.71 -0.77 15.24 16 36 H 0.10 5.70 6.23 -2.91 -0.02 5.69 16 Total: -1.00 -86.14 319.63 4.95 -81.20 By element: Atomic # 1 Polarization: 25.83 SS G_CDS: 0.30 Total: 26.13 kcal Atomic # 6 Polarization: -29.69 SS G_CDS: 5.09 Total: -24.60 kcal Atomic # 7 Polarization: -79.29 SS G_CDS: -1.36 Total: -80.65 kcal Atomic # 8 Polarization: -47.49 SS G_CDS: -1.11 Total: -48.60 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.52 kcal Total: -86.14 4.95 -81.20 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001624808495.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.173 kcal (2) G-P(sol) polarization free energy of solvation -86.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds