Wall clock time and date at job start Mon Mar 30 2020 01:51:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.45205 * 109.46692 * 2 1 4 4 C 1.34838 * 116.99501 * 180.02562 * 3 2 1 5 5 C 1.34430 * 119.99734 * 180.02562 * 4 3 2 6 6 C 1.41765 * 120.00322 * 359.97438 * 5 4 3 7 7 O 1.21751 * 119.99592 * 0.02562 * 6 5 4 8 8 N 1.34774 * 120.00404 * 180.02562 * 6 5 4 9 9 C 1.39847 * 120.00091 * 175.50695 * 8 6 5 10 10 C 1.38978 * 120.03547 * 215.15961 * 9 8 6 11 11 C 1.38157 * 120.06144 * 179.97438 * 10 9 8 12 12 C 1.38169 * 120.14032 * 359.73710 * 11 10 9 13 13 C 1.38907 * 120.07460 * 0.51857 * 12 11 10 14 14 O 1.35751 * 120.03425 * 179.76356 * 13 12 11 15 15 C 1.34836 * 116.99582 * 354.34632 * 14 13 12 16 16 H 1.07995 * 120.00241 * 5.02786 * 15 14 13 17 17 C 1.38656 * 119.99668 * 185.02470 * 15 14 13 18 18 N 1.31556 * 120.00260 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 119.99938 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47299 * 359.97438 * 19 17 15 21 21 H 1.48494 * 109.47355 * 120.00006 * 19 17 15 22 22 H 1.48507 * 109.46985 * 240.00013 * 19 17 15 23 23 C 1.38731 * 120.03632 * 35.13906 * 9 8 6 24 24 H 1.09003 * 109.47030 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.46964 * 299.99830 * 1 2 3 26 26 H 1.08997 * 109.47353 * 60.00122 * 1 2 3 27 27 H 1.09003 * 109.46964 * 240.00170 * 2 1 3 28 28 H 1.08997 * 109.47353 * 119.99877 * 2 1 3 29 29 H 1.07996 * 120.00332 * 359.97438 * 4 3 2 30 30 H 1.08002 * 120.00274 * 180.02562 * 5 4 3 31 31 H 0.96999 * 119.99920 * 355.50782 * 8 6 5 32 32 H 1.08004 * 119.97262 * 359.97438 * 10 9 8 33 33 H 1.08009 * 119.92685 * 180.02562 * 11 10 9 34 34 H 1.08005 * 119.96177 * 180.25439 * 12 11 10 35 35 H 0.96994 * 120.00576 * 180.02562 * 18 17 15 36 36 H 1.08004 * 120.07019 * 0.04073 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3507 1.5457 -0.0005 5 6 3.8645 2.7879 0.0000 6 6 3.0009 3.9122 0.0005 7 8 1.7939 3.7526 0.0010 8 7 3.5160 5.1577 0.0005 9 6 2.6675 6.2653 -0.0939 10 6 3.0739 7.3954 -0.7933 11 6 2.2359 8.4897 -0.8873 12 6 0.9896 8.4623 -0.2914 13 6 0.5796 7.3378 0.4135 14 8 -0.6431 7.3137 1.0028 15 6 -1.3626 8.4535 0.9665 16 1 -0.9959 9.3062 0.4146 17 6 -2.5733 8.5306 1.6380 18 7 -3.0198 7.4920 2.3107 19 14 -3.5704 10.1094 1.5873 20 1 -2.8543 11.1212 0.7696 21 1 -4.8998 9.8361 0.9847 22 1 -3.7496 10.6262 2.9680 23 6 1.4189 6.2370 0.5102 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 4.0086 0.6893 -0.0005 30 1 4.9352 2.9295 -0.0009 31 1 4.4753 5.2858 0.0659 32 1 4.0458 7.4182 -1.2638 33 1 2.5538 9.3667 -1.4317 34 1 0.3351 9.3179 -0.3702 35 1 -3.8669 7.5458 2.7801 36 1 1.1009 5.3601 1.0545 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001624808501.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:49 Heat of formation + Delta-G solvation = -49.171628 kcal Electronic energy + Delta-G solvation = -20570.073082 eV Core-core repulsion = 17214.489404 eV Total energy + Delta-G solvation = -3355.583678 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.11421 -38.97709 -38.19167 -36.29902 -33.77126 -32.80538 -32.13893 -30.71119 -29.24919 -28.20557 -25.22947 -23.82147 -23.21019 -21.75866 -20.97283 -19.67032 -18.08994 -18.03096 -17.00887 -16.03278 -15.79499 -15.73189 -14.92238 -14.68941 -14.59819 -14.08669 -13.77368 -13.41045 -13.27723 -13.00149 -12.77129 -12.52591 -12.42531 -12.35092 -11.63402 -11.50795 -11.38019 -11.14032 -11.04364 -10.91644 -10.63011 -10.37253 -9.52789 -9.45325 -8.94476 -8.72320 -8.66543 -7.48941 -7.02996 -6.32563 -3.91332 1.42670 2.33544 2.49339 3.09665 3.19806 3.20726 3.26708 3.65478 3.78146 4.07220 4.43948 4.73447 4.76261 4.85644 5.04641 5.21508 5.38202 5.42397 5.53083 5.73704 5.74135 5.76889 5.98494 6.05858 6.10031 6.24336 6.42127 6.55328 6.90346 7.09169 7.17412 7.23755 7.28733 7.47352 7.62395 7.97805 8.01284 8.13375 8.75847 9.12664 9.86606 10.85823 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.016897 B = 0.004424 C = 0.003581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1656.739622 B = 6327.025464 C = 7817.649853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.049 3.951 3 O -0.281 6.281 4 C 0.136 3.864 5 C -0.307 4.307 6 C 0.542 3.458 7 O -0.505 6.505 8 N -0.675 5.675 9 C 0.181 3.819 10 C -0.238 4.238 11 C -0.061 4.061 12 C -0.249 4.249 13 C 0.167 3.833 14 O -0.176 6.176 15 C -0.390 4.390 16 H 0.092 0.908 17 C 0.037 3.963 18 N -0.863 5.863 19 Si 0.941 3.059 20 H -0.267 1.267 21 H -0.277 1.277 22 H -0.277 1.277 23 C -0.186 4.186 24 H 0.075 0.925 25 H 0.071 0.929 26 H 0.069 0.931 27 H 0.062 0.938 28 H 0.063 0.937 29 H 0.132 0.868 30 H 0.141 0.859 31 H 0.402 0.598 32 H 0.106 0.894 33 H 0.110 0.890 34 H 0.126 0.874 35 H 0.268 0.732 36 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.026 -11.835 -4.729 18.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.026 4.026 3 O -0.191 6.191 4 C 0.067 3.933 5 C -0.330 4.330 6 C 0.334 3.666 7 O -0.381 6.381 8 N -0.320 5.320 9 C 0.087 3.913 10 C -0.259 4.259 11 C -0.079 4.079 12 C -0.269 4.269 13 C 0.112 3.888 14 O -0.079 6.079 15 C -0.466 4.466 16 H 0.110 0.890 17 C -0.166 4.166 18 N -0.498 5.498 19 Si 0.766 3.234 20 H -0.191 1.191 21 H -0.202 1.202 22 H -0.202 1.202 23 C -0.208 4.208 24 H 0.094 0.906 25 H 0.090 0.910 26 H 0.088 0.912 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.150 0.850 30 H 0.158 0.842 31 H 0.236 0.764 32 H 0.125 0.875 33 H 0.128 0.872 34 H 0.144 0.856 35 H 0.078 0.922 36 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 12.640 -12.131 -4.476 18.082 hybrid contribution 0.360 0.699 -0.070 0.789 sum 13.000 -11.433 -4.546 17.899 Atomic orbital electron populations 1.21747 0.92444 1.02379 1.04584 1.23356 0.97036 0.81199 1.01031 1.86778 1.19293 1.28320 1.84669 1.23108 0.84333 0.97144 0.88668 1.21291 1.00025 0.91502 1.20163 1.17088 0.88891 0.83013 0.77618 1.90939 1.14760 1.85523 1.46919 1.43353 1.09603 1.04954 1.74134 1.17200 0.91082 0.86628 0.96384 1.20289 1.01644 0.95440 1.08577 1.20481 0.93313 0.96686 0.97460 1.21148 0.98460 1.00506 1.06736 1.19169 0.86050 0.92609 0.90950 1.84001 1.21853 1.35958 1.66125 1.21395 1.01796 0.90482 1.32941 0.89017 1.25288 0.96672 0.98950 0.95731 1.70069 1.20286 1.29213 1.30227 0.85653 0.79361 0.80094 0.78321 1.19120 1.20233 1.20237 1.20219 0.94069 0.99529 1.06951 0.90638 0.90987 0.91153 0.91937 0.91866 0.85039 0.84161 0.76351 0.87549 0.87237 0.85612 0.92211 0.84790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 10.29 37.16 0.38 -1.17 16 2 C 0.05 0.45 6.85 37.16 0.25 0.70 16 3 O -0.28 -3.93 7.94 -39.50 -0.31 -4.24 16 4 C 0.14 1.47 10.43 29.39 0.31 1.78 16 5 C -0.31 -3.73 9.82 -39.58 -0.39 -4.12 16 6 C 0.54 9.52 7.40 -14.91 -0.11 9.40 16 7 O -0.51 -11.42 12.26 -18.11 -0.22 -11.64 16 8 N -0.68 -11.06 5.32 -12.45 -0.07 -11.12 16 9 C 0.18 3.70 6.29 -83.75 -0.53 3.18 16 10 C -0.24 -4.43 9.96 -39.34 -0.39 -4.82 16 11 C -0.06 -1.18 10.03 -39.64 -0.40 -1.58 16 12 C -0.25 -5.82 9.16 -39.36 -0.36 -6.18 16 13 C 0.17 4.45 6.64 -39.14 -0.26 4.19 16 14 O -0.18 -5.44 9.76 0.03 0.00 -5.44 16 15 C -0.39 -11.52 9.49 30.89 0.29 -11.22 16 16 H 0.09 2.50 5.20 -52.49 -0.27 2.23 16 17 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 18 N -0.86 -26.57 13.67 55.48 0.76 -25.81 16 19 Si 0.94 21.39 29.55 -169.99 -5.02 16.37 16 20 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 21 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 22 H -0.28 -6.14 7.11 56.52 0.40 -5.73 16 23 C -0.19 -4.63 8.63 -39.20 -0.34 -4.97 16 24 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 25 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 26 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.13 0.75 8.01 -52.49 -0.42 0.33 16 30 H 0.14 1.12 8.06 -52.49 -0.42 0.70 16 31 H 0.40 4.77 8.78 -40.82 -0.36 4.41 16 32 H 0.11 1.61 8.06 -52.48 -0.42 1.18 16 33 H 0.11 1.76 8.06 -52.48 -0.42 1.34 16 34 H 0.13 2.91 5.63 -52.48 -0.30 2.61 16 35 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 36 H 0.13 3.60 6.23 -52.48 -0.33 3.27 16 LS Contribution 317.37 15.07 4.78 4.78 Total: -1.00 -37.71 317.37 -5.91 -43.62 By element: Atomic # 1 Polarization: 11.52 SS G_CDS: -4.19 Total: 7.33 kcal Atomic # 6 Polarization: -12.20 SS G_CDS: -1.63 Total: -13.83 kcal Atomic # 7 Polarization: -37.63 SS G_CDS: 0.69 Total: -36.94 kcal Atomic # 8 Polarization: -20.80 SS G_CDS: -0.54 Total: -21.33 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -37.71 -5.91 -43.62 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001624808501.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.551 kcal (2) G-P(sol) polarization free energy of solvation -37.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds